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clpP-rps11

LSC · 35854-38290 · 2437 bp

Back to Danxiaorchis

Pi 0.0109

MarkerSeek score 62.20

Primer available yes

Label clpP-rps11

Feature Metadata

label_name: clpP-rps11
feature_type: igs
region: LSC
length_bp: 2437
variable_sites: 26
pi: 0.0109
unique_haplotype_count: 2
primer_available: yes
alignment_reliability: 0.98
markerseek_score: 62.20

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
clpP-rps11_p1	TGGACCCATATGTCTGACGA	AAGAGATGCGGCATTACGAG	50.0	50.0	57.8	58.1	2650-2913 bp	1.0	79.6
clpP-rps11_p2	TGGACCCATATGTCTGACGA	GAAGAGATGCGGCATTACGA	50.0	50.0	57.8	58.1	2651-2914 bp	1.0	79.6
clpP-rps11_p3	TGGACCCATATGTCTGACGA	GATGTAACACCCATGCCACA	50.0	50.0	57.8	58.2	2592-2855 bp	1.0	79.5
clpP-rps11_p4	TGGACCCATATGTCTGACGA	GTGATGTAACACCCATGCCA	50.0	50.0	57.8	58.2	2594-2857 bp	1.0	79.5
clpP-rps11_p5	TGGACCCATATGTCTGACGA	TGATGTAACACCCATGCCAC	50.0	50.0	57.8	58.2	2593-2856 bp	1.0	79.5