feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score rps19_part2 gene rps19 rps19 1 48 1 48 LSC 0.020833 1 0 300 150 no 1.000000 2 1.000000 NA 1.000000 60.700000 trnH-GUG tRNA trnH-GUG trnH-GUG 30 104 -1 75 LSC 0.000000 0 0 15 94 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_002 igs trnH-GUG|psbA trnH-GUG-psbA 105 376 0 272 LSC 0.034091 9 8 90 204 no 1.000000 2 1.000000 NA 0.970588 66.600000 psbA gene psbA psbA 377 1438 -1 1062 LSC 0.003766 4 0 6 82 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_003 igs psbA|trnK-UUU psbA-trnK-UUU 1439 1793 0 355 LSC 0.025641 9 4 188 217 no 1.000000 2 1.000000 NA 0.988732 68.500000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1794 1828 -1 35 LSC 0.000000 0 0 5 182 no 0.000000 1 0.000000 NA 1.000000 19.100000 matK gene matK matK 2155 3693 -1 1539 LSC 0.006540 10 10 3 8 no 1.000000 2 1.000000 NA 0.993502 48.300000 IGS_006 igs matK|trnK-UUU matK-trnK-UUU 3694 4422 0 729 LSC 0.009642 7 3 12 53 no 1.000000 2 1.000000 NA 0.995885 50.600000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4423 4459 -1 37 LSC 0.000000 0 0 18 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_007 igs trnK-UUU|rbcL trnK-UUU-rbcL 4460 5462 0 1003 LSC 0.034745 32 82 55 300 no 1.000000 2 1.000000 NA 0.918245 71.400000 rbcL gene rbcL rbcL 5463 6890 -1 1428 LSC 0.002801 4 0 81 145 no 1.000000 2 1.000000 NA 1.000000 51.400000 IGS_008 igs rbcL|atpB rbcL-atpB 6891 7674 0 784 LSC 0.003871 3 9 167 300 no 1.000000 2 1.000000 NA 0.988520 59.600000 atpB gene atpB atpB 7675 9171 1 1497 LSC 0.000668 1 0 3 159 no 1.000000 2 1.000000 NA 1.000000 44.400000 atpE gene atpE atpE 9168 9569 1 402 LSC 0.004975 2 0 191 32 no 1.000000 2 1.000000 NA 1.000000 44.900000 IGS_010 igs atpE|trnM-CAU atpE-trnM-CAU 9570 9687 0 118 LSC 0.025862 3 2 225 31 no 1.000000 2 1.000000 NA 0.983051 56.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 9688 9760 -1 73 LSC 0.013699 1 0 83 4 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_011 igs trnM-CAU|trnV-UAC trnM-CAU-trnV-UAC 9761 9936 0 176 LSC 0.039773 7 0 41 72 no 1.000000 2 1.000000 NA 1.000000 63.400000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 9937 9975 1 39 LSC 0.000000 0 0 3 33 no 0.000000 1 0.000000 NA 1.000000 19.000000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 10567 10601 1 35 LSC 0.000000 0 0 7 33 no 0.000000 1 0.000000 NA 1.000000 19.300000 IGS_014 igs trnV-UAC|ndhC trnV-UAC-ndhC 10602 11078 0 477 LSC 0.041063 17 63 42 300 no 1.000000 2 1.000000 NA 0.867925 69.800000 ndhC gene ndhC ndhC 11079 11441 1 363 LSC 0.000000 0 0 89 300 no 0.000000 1 0.000000 NA 1.000000 26.700000 IGS_015 igs ndhC|ndhK ndhC-ndhK 11442 11483 0 42 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhK gene ndhK ndhK 11484 12155 1 672 LSC 0.002976 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 60.500000 IGS_016 igs ndhK|ndhJ ndhK-ndhJ 12156 12302 0 147 LSC 0.000000 0 0 29 300 no 0.000000 1 0.000000 NA 1.000000 20.900000 ndhJ gene ndhJ ndhJ 12303 12779 1 477 LSC 0.002096 1 0 176 11 no 1.000000 2 1.000000 NA 1.000000 43.200000 IGS_017 igs ndhJ|trnG-UCC ndhJ-trnG-UCC 12780 13410 0 631 LSC 0.019231 12 7 30 39 no 1.000000 2 1.000000 NA 0.988906 58.100000 trnG-UCC_part1 tRNA trnG-UCC trnG-UCC 13411 13433 1 23 LSC 0.000000 0 0 26 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 trnG-UCC_part2 tRNA trnG-UCC trnG-UCC 14143 14190 1 48 LSC 0.000000 0 0 105 203 no 0.000000 1 0.000000 NA 1.000000 26.600000 IGS_020 igs trnG-UCC|trnR-UCU trnG-UCC-trnR-UCU 14191 14285 0 95 LSC 0.000000 0 3 153 108 no 1.000000 2 1.000000 NA 0.968421 48.700000 trnR-UCU tRNA trnR-UCU trnR-UCU 14286 14357 1 72 LSC 0.000000 0 0 248 36 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_021 igs trnR-UCU|atpA trnR-UCU-atpA 14358 14683 0 326 LSC 0.026936 8 29 300 240 no 1.000000 2 1.000000 NA 0.911043 72.000000 atpA gene atpA atpA 14684 16216 -1 1533 LSC 0.001957 3 0 9 20 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_022 igs atpA|atpF atpA-atpF 16217 16292 0 76 LSC 0.026316 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 67.600000 atpF gene atpF atpF 16293 17604 -1 1312 LSC 0.008436 11 8 8 16 no 1.000000 2 1.000000 NA 0.993902 49.800000 IGS_023 igs atpF|atpH atpF-atpH 17605 18248 0 644 LSC 0.033333 21 14 300 300 yes 1.000000 2 1.000000 NA 0.978261 79.900000 atpH gene atpH atpH 18249 18494 -1 246 LSC 0.000000 0 0 94 140 no 0.000000 1 0.000000 NA 1.000000 25.800000 IGS_024 igs atpH|atpI atpH-atpI 18495 19798 0 1304 LSC 0.019465 24 71 300 131 no 1.000000 2 1.000000 NA 0.945552 69.400000 atpI gene atpI atpI 19799 20542 -1 744 LSC 0.005376 4 0 108 9 no 1.000000 2 1.000000 NA 1.000000 47.500000 IGS_025 igs atpI|rps2 atpI-rps2 20543 20772 0 230 LSC 0.021739 5 0 26 257 no 1.000000 2 1.000000 NA 1.000000 51.900000 rps2 gene rps2 rps2 20773 21483 -1 711 LSC 0.001406 1 0 75 33 no 1.000000 2 1.000000 NA 1.000000 47.000000 IGS_026 igs rps2|rpoC2 rps2-rpoC2 21484 21778 0 295 LSC 0.017182 5 4 300 141 no 1.000000 2 1.000000 NA 0.986441 59.200000 rpoC2 gene rpoC2 rpoC2 21779 25906 -1 4128 LSC 0.006541 27 0 180 36 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_027 igs rpoC2|rpoC1 rpoC2-rpoC1 25907 26106 0 200 LSC 0.010000 2 0 200 300 no 1.000000 2 1.000000 NA 1.000000 58.200000 rpoC1 gene rpoC1 rpoC1 26107 28983 -1 2877 LSC 0.002123 6 51 99 11 no 1.000000 2 1.000000 NA 0.982273 44.600000 IGS_028 igs rpoC1|rpoB rpoC1-rpoB 28984 29018 0 35 LSC 0.033333 1 5 300 50 no 1.000000 2 1.000000 NA 0.857143 62.100000 rpoB gene rpoB rpoB 29019 32231 -1 3213 LSC 0.002179 7 0 23 300 no 1.000000 2 1.000000 NA 1.000000 43.300000 IGS_029 igs rpoB|trnC-GCA rpoB-trnC-GCA 32232 32973 0 742 LSC 0.011004 8 15 106 165 no 1.000000 2 1.000000 NA 0.979784 60.000000 trnC-GCA tRNA trnC-GCA trnC-GCA 32974 33044 1 71 LSC 0.000000 0 0 24 94 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_030 igs trnC-GCA|petN trnC-GCA-petN 33045 33855 0 811 LSC 0.008631 7 0 95 154 no 1.000000 2 1.000000 NA 1.000000 55.800000 petN gene petN petN 33856 33945 1 90 LSC 0.000000 0 0 126 64 no 0.000000 1 0.000000 NA 1.000000 23.500000 IGS_031 igs petN|psbM petN-psbM 33946 34796 0 851 LSC 0.019975 16 50 216 205 no 1.000000 2 1.000000 NA 0.941246 74.700000 psbM gene psbM psbM 34797 34901 -1 105 LSC 0.000000 0 0 58 100 no 0.000000 1 0.000000 NA 1.000000 23.100000 IGS_032 igs psbM|trnD-GUC psbM-trnD-GUC 34902 35293 0 392 LSC 0.007752 3 5 163 5 no 1.000000 2 1.000000 NA 0.987245 45.500000 trnD-GUC tRNA trnD-GUC trnD-GUC 35294 35367 -1 74 LSC 0.013514 1 0 162 47 no 1.000000 2 1.000000 NA 1.000000 48.800000 IGS_033 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 35368 35839 0 472 LSC 0.019149 9 2 68 99 no 1.000000 2 1.000000 NA 0.995763 57.600000 trnY-GUA tRNA trnY-GUA trnY-GUA 35840 35923 -1 84 LSC 0.000000 0 0 73 15 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_034 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 35924 35983 0 60 LSC 0.033333 2 0 157 273 no 1.000000 2 1.000000 NA 1.000000 68.400000 trnE-UUC tRNA trnE-UUC trnE-UUC 35984 36056 -1 73 LSC 0.000000 0 0 36 200 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_035 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 36057 36462 0 406 LSC 0.007389 3 0 109 97 no 1.000000 2 1.000000 NA 1.000000 51.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 36463 36534 1 72 LSC 0.000000 0 0 98 25 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_036 igs trnT-GGU|psbD trnT-GGU-psbD 36535 37831 0 1297 LSC 0.017774 23 3 170 92 no 1.000000 2 1.000000 NA 0.997687 61.100000 psbD gene psbD psbD 37832 38893 1 1062 LSC 0.001883 2 0 86 33 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_037 igs psbD|trnS-UGA psbD-trnS-UGA 38894 40497 0 1604 LSC 0.011236 18 2 300 263 no 1.000000 2 1.000000 NA 0.998753 65.100000 trnS-UGA tRNA trnS-UGA trnS-UGA 40498 40590 -1 93 LSC 0.000000 0 0 59 170 no 0.000000 1 0.000000 NA 1.000000 23.200000 IGS_038 igs trnS-UGA|psbZ trnS-UGA-psbZ 40591 40954 0 364 LSC 0.005525 2 2 152 277 no 1.000000 2 1.000000 NA 0.994505 53.900000 psbZ gene psbZ psbZ 40955 41143 1 189 LSC 0.000000 0 0 52 88 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_039 igs psbZ|trnG-GCC psbZ-trnG-GCC 41144 41708 0 565 LSC 0.041219 23 7 241 155 yes 1.000000 2 1.000000 NA 0.987611 79.500000 trnG-GCC tRNA trnG-GCC trnG-GCC 41709 41779 1 71 LSC 0.000000 0 0 6 84 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_040 igs trnG-GCC|trnfM-CAU trnG-GCC-trnfM-CAU 41780 41901 0 122 LSC 0.016807 2 3 77 119 no 1.000000 2 1.000000 NA 0.975410 55.300000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 41902 41975 -1 74 LSC 0.000000 0 0 1 45 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_041 igs trnfM-CAU|rps14 trnfM-CAU-rps14 41976 42137 0 162 LSC 0.006173 1 0 75 300 no 1.000000 2 1.000000 NA 1.000000 46.700000 rps14 gene rps14 rps14 42138 42440 -1 303 LSC 0.000000 0 0 116 38 no 0.000000 1 0.000000 NA 1.000000 21.700000 IGS_042 igs rps14|psaB rps14-psaB 42441 42573 0 133 LSC 0.030075 4 0 300 174 no 1.000000 2 1.000000 NA 1.000000 67.800000 psaB gene psaB psaB 42574 44778 -1 2205 LSC 0.003628 8 0 3 300 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_043 igs psaB|psaA psaB-psaA 44779 44803 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaA gene psaA psaA 44804 47056 -1 2253 LSC 0.001775 4 0 300 46 no 1.000000 2 1.000000 NA 1.000000 46.700000 IGS_044 igs psaA|pafI psaA-pafI 47057 47870 0 814 LSC 0.018494 14 57 300 265 no 1.000000 2 1.000000 NA 0.929975 73.500000 pafI gene pafI pafI 47871 49853 -1 1983 LSC 0.007071 14 3 38 78 no 1.000000 2 1.000000 NA 0.998487 49.800000 IGS_045 igs pafI|trnS-GGA pafI-trnS-GGA 49854 50128 0 275 LSC 0.010909 3 0 117 222 no 1.000000 2 1.000000 NA 1.000000 52.500000 trnS-GGA tRNA trnS-GGA trnS-GGA 50129 50216 1 88 LSC 0.000000 0 0 58 134 no 0.000000 1 0.000000 NA 1.000000 23.100000 IGS_046 igs trnS-GGA|rps4 trnS-GGA-rps4 50217 50451 0 235 LSC 0.012766 3 0 146 300 no 1.000000 2 1.000000 NA 1.000000 55.800000 rps4 gene rps4 rps4 50452 51060 -1 609 LSC 0.001642 1 0 16 224 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_047 igs rps4|trnT-UGU rps4-trnT-UGU 51061 51334 0 274 LSC 0.003650 1 0 254 75 no 1.000000 2 1.000000 NA 1.000000 45.200000 trnT-UGU tRNA trnT-UGU trnT-UGU 51335 51407 -1 73 LSC 0.000000 0 0 49 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_048 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 51408 52244 0 837 LSC 0.017413 14 33 122 131 no 1.000000 2 1.000000 NA 0.960573 66.600000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 52245 52279 1 35 LSC 0.000000 0 0 91 96 no 0.000000 1 0.000000 NA 1.000000 25.600000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 52810 52859 1 50 LSC 0.000000 0 0 79 8 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_051 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 52860 52978 0 119 LSC 0.008547 1 2 129 186 no 1.000000 2 1.000000 NA 0.983193 53.700000 trnF-GAA tRNA trnF-GAA trnF-GAA 52979 53051 1 73 LSC 0.000000 0 0 110 113 no 0.000000 1 0.000000 NA 1.000000 27.000000 IGS_052 igs trnF-GAA|trnS-GCU trnF-GAA-trnS-GCU 53052 54070 0 1019 LSC 0.021075 20 70 183 170 no 1.000000 2 1.000000 NA 0.931305 72.800000 trnS-GCU tRNA trnS-GCU trnS-GCU 54071 54157 1 87 LSC 0.000000 0 0 8 83 no 0.000000 1 0.000000 NA 1.000000 19.400000 IGS_053 igs trnS-GCU|psbI trnS-GCU-psbI 54158 54339 0 182 LSC 0.010989 2 0 95 300 no 1.000000 2 1.000000 NA 1.000000 50.900000 psbI gene psbI psbI 54340 54450 -1 111 LSC 0.000000 0 0 54 300 no 0.000000 1 0.000000 NA 1.000000 22.800000 IGS_054 igs psbI|psbK psbI-psbK 54451 54921 0 471 LSC 0.002155 1 7 165 192 no 1.000000 2 1.000000 NA 0.985138 56.100000 psbK gene psbK psbK 54922 55107 -1 186 LSC 0.000000 0 0 51 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_055 igs psbK|trnQ-UUG psbK-trnQ-UUG 55108 55972 0 865 LSC 0.025579 21 44 237 95 no 1.000000 2 1.000000 NA 0.949133 70.200000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 55973 56044 1 72 LSC 0.000000 0 0 222 23 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_056 igs trnQ-UUG|rps16 trnQ-UUG-rps16 56045 56554 0 510 LSC 0.010246 5 22 294 157 no 1.000000 2 1.000000 NA 0.956863 63.700000 rps16 gene rps16 rps16 56555 57686 1 1132 LSC 0.007124 8 9 126 90 no 1.000000 2 1.000000 NA 0.992049 55.400000 IGS_057 igs rps16|accD rps16-accD 57687 58241 0 555 LSC 0.011091 6 14 300 202 no 1.000000 2 1.000000 NA 0.974775 66.600000 accD gene accD accD 58242 59753 1 1512 LSC 0.004630 7 0 4 138 no 1.000000 2 1.000000 NA 1.000000 46.700000 IGS_058 igs accD|psaI accD-psaI 59754 60436 0 683 LSC 0.013554 9 19 45 300 no 1.000000 2 1.000000 NA 0.972182 57.600000 psaI gene psaI psaI 60437 60541 1 105 LSC 0.000000 0 0 123 216 no 0.000000 1 0.000000 NA 1.000000 28.000000 IGS_059 igs psaI|pafII psaI-pafII 60542 60738 0 197 LSC 0.000000 0 0 228 19 no 0.000000 1 0.000000 NA 1.000000 20.200000 pafII gene pafII pafII 60739 61293 1 555 LSC 0.005405 3 0 300 67 no 1.000000 2 1.000000 NA 1.000000 50.900000 IGS_060 igs pafII|cemA pafII-cemA 61294 61710 0 417 LSC 0.012165 5 6 186 98 no 1.000000 2 1.000000 NA 0.985612 55.700000 cemA gene cemA cemA 61711 62400 1 690 LSC 0.002899 2 0 192 300 no 1.000000 2 1.000000 NA 1.000000 59.800000 IGS_061 igs cemA|petA cemA-petA 62401 62625 0 225 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 petA gene petA petA 62626 63588 1 963 LSC 0.003115 3 0 300 42 no 1.000000 2 1.000000 NA 1.000000 48.700000 IGS_062 igs petA|psbJ petA-psbJ 63589 64786 0 1198 LSC 0.011149 13 32 136 247 no 1.000000 2 1.000000 NA 0.973289 62.900000 psbJ gene psbJ psbJ 64787 64909 -1 123 LSC 0.000000 0 0 225 124 no 0.000000 1 0.000000 NA 1.000000 28.000000 IGS_063 igs psbJ|psbL psbJ-psbL 64910 65047 0 138 LSC 0.007353 1 2 300 136 no 1.000000 2 1.000000 NA 0.985507 53.300000 psbL gene psbL psbL 65048 65164 -1 117 LSC 0.000000 0 0 13 19 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_064 igs psbL|psbF psbL-psbF 65165 65186 0 22 LSC 0.045455 1 0 130 300 no 1.000000 2 1.000000 NA 1.000000 73.400000 psbF gene psbF psbF 65187 65306 -1 120 LSC 0.000000 0 0 2 300 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_065 igs psbF|psbE psbF-psbE 65307 65315 0 9 LSC 0.000000 0 0 122 300 no 0.000000 1 0.000000 NA 1.000000 27.900000 psbE gene psbE psbE 65316 65567 -1 252 LSC 0.000000 0 0 131 84 no 0.000000 1 0.000000 NA 1.000000 25.100000 IGS_066 igs psbE|petL psbE-petL 65568 66918 0 1351 LSC 0.023100 31 9 300 149 no 1.000000 2 1.000000 NA 0.993338 68.800000 petL gene petL petL 66919 67014 1 96 LSC 0.000000 0 0 13 53 no 0.000000 1 0.000000 NA 1.000000 19.700000 IGS_067 igs petL|petG petL-petG 67015 67176 0 162 LSC 0.013072 2 9 109 300 no 1.000000 2 1.000000 NA 0.944444 57.800000 petG gene petG petG 67177 67290 1 114 LSC 0.000000 0 0 36 300 no 0.000000 1 0.000000 NA 1.000000 21.400000 IGS_068 igs petG|trnW-CCA petG-trnW-CCA 67291 67421 0 131 LSC 0.000000 0 0 150 300 no 0.000000 1 0.000000 NA 1.000000 30.000000 trnW-CCA tRNA trnW-CCA trnW-CCA 67422 67495 -1 74 LSC 0.000000 0 0 281 240 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_069 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 67496 67655 0 160 LSC 0.000000 0 0 300 80 no 0.000000 1 0.000000 NA 1.000000 24.800000 trnP-UGG tRNA trnP-UGG trnP-UGG 67656 67729 -1 74 LSC 0.000000 0 0 300 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_070 igs trnP-UGG|psaJ trnP-UGG-psaJ 67730 68269 0 540 LSC 0.017110 9 14 300 177 no 1.000000 2 1.000000 NA 0.974074 68.100000 psaJ gene psaJ psaJ 68270 68404 1 135 LSC 0.000000 0 0 2 42 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 68405 68917 0 513 LSC 0.008048 4 16 137 158 no 1.000000 2 1.000000 NA 0.968811 59.800000 rpl33 gene rpl33 rpl33 68918 69118 1 201 LSC 0.009950 2 0 174 26 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_072 igs rpl33|rps18 rpl33-rps18 69119 69346 0 228 LSC 0.013274 3 2 18 253 no 1.000000 2 1.000000 NA 0.991228 47.300000 rps18 gene rps18 rps18 69347 69643 1 297 LSC 0.003367 1 0 26 245 no 1.000000 2 1.000000 NA 1.000000 41.400000 IGS_073 igs rps18|rpl20 rps18-rpl20 69644 69918 0 275 LSC 0.003650 1 1 43 65 no 1.000000 2 1.000000 NA 0.996364 43.200000 rpl20 gene rpl20 rpl20 69919 70296 -1 378 LSC 0.015873 6 0 29 69 no 1.000000 2 1.000000 NA 1.000000 50.400000 IGS_074 igs rpl20|rps12 rpl20-rps12 70297 71097 0 801 LSC 0.008917 7 16 68 286 no 1.000000 2 1.000000 NA 0.980025 55.900000 rps12_part1 gene rps12 rps12 71098 71211 -1 114 LSC 0.000000 0 0 91 172 no 0.000000 1 0.000000 NA 1.000000 25.600000 IGS_075 igs rps12|clpP1 rps12-clpP1 71212 71391 0 180 LSC 0.005556 1 0 205 300 no 1.000000 2 1.000000 NA 1.000000 55.700000 clpP1 gene clpP1 clpP1 71392 73360 -1 1969 LSC 0.008754 17 27 7 20 no 1.000000 2 1.000000 NA 0.986287 49.600000 IGS_076 igs clpP1|psbB clpP1-psbB 73361 73817 0 457 LSC 0.010941 5 0 89 300 no 1.000000 2 1.000000 NA 1.000000 53.700000 psbB gene psbB psbB 73818 75344 1 1527 LSC 0.000655 1 0 76 300 no 1.000000 2 1.000000 NA 1.000000 49.800000 IGS_077 igs psbB|psbT psbB-psbT 75345 75538 0 194 LSC 0.000000 0 4 300 300 no 1.000000 2 1.000000 NA 0.979381 54.500000 psbT gene psbT psbT 75539 75646 1 108 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_078 igs psbT|pbf1 psbT-pbf1 75647 75706 0 60 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 pbf1 gene pbf1 pbf1 75707 75838 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_079 igs pbf1|psbH pbf1-psbH 75839 75944 0 106 LSC 0.000000 0 0 300 225 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbH gene psbH psbH 75945 76166 1 222 LSC 0.000000 0 0 300 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_080 igs psbH|petB psbH-petB 76167 76298 0 132 LSC 0.031496 4 5 300 37 no 1.000000 2 1.000000 NA 0.962121 61.900000 petB gene petB petB 76299 77667 1 1369 LSC 0.009531 13 5 54 208 no 1.000000 2 1.000000 NA 0.996348 53.600000 IGS_081 igs petB|petD petB-petD 77668 77871 0 204 LSC 0.000000 0 1 37 4 no 1.000000 2 1.000000 NA 0.995098 38.300000 petD gene petD petD 77872 79067 1 1196 LSC 0.006689 8 0 241 136 no 1.000000 2 1.000000 NA 1.000000 57.800000 IGS_082 igs petD|rpoA petD-rpoA 79068 79276 0 209 LSC 0.004808 1 1 300 68 no 1.000000 2 1.000000 NA 0.995215 45.800000 rpoA gene rpoA rpoA 79277 80272 -1 996 LSC 0.006024 6 0 72 85 no 1.000000 2 1.000000 NA 1.000000 52.600000 IGS_083 igs rpoA|rps11 rpoA-rps11 80273 80354 0 82 LSC 0.000000 0 6 251 3 no 1.000000 2 1.000000 NA 0.926829 41.900000 rps11 gene rps11 rps11 80355 80771 -1 417 LSC 0.007194 3 0 300 91 no 1.000000 2 1.000000 NA 1.000000 50.900000 IGS_084 igs rps11|rpl36 rps11-rpl36 80772 81114 0 343 LSC 0.014577 5 0 300 99 no 1.000000 2 1.000000 NA 1.000000 54.200000 rpl36 gene rpl36 rpl36 81115 81228 -1 114 LSC 0.008772 1 0 12 25 no 1.000000 2 1.000000 NA 1.000000 43.400000 IGS_085 igs rpl36|infA rpl36-infA 81229 81369 0 141 LSC 0.028369 4 0 14 109 no 1.000000 2 1.000000 NA 1.000000 54.900000 infA gene infA infA 81370 81402 -1 33 LSC 0.000000 0 0 23 76 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_086 igs infA|rps8 infA-rps8 81403 81678 0 276 LSC 0.018519 5 6 56 180 no 1.000000 2 1.000000 NA 0.978261 54.400000 rps8 gene rps8 rps8 81679 82083 -1 405 LSC 0.009877 4 0 36 103 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_087 igs rps8|rpl14 rps8-rpl14 82084 82406 0 323 LSC 0.015924 5 9 3 69 no 1.000000 2 1.000000 NA 0.972136 50.000000 rpl14 gene rpl14 rpl14 82407 82775 -1 369 LSC 0.008130 3 0 24 83 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_088 igs rpl14|rpl16 rpl14-rpl16 82776 82906 0 131 LSC 0.015267 2 0 233 153 no 1.000000 2 1.000000 NA 1.000000 57.800000 rpl16 gene rpl16 rpl16 82907 84428 -1 1522 LSC 0.011199 17 4 6 85 no 1.000000 2 1.000000 NA 0.997372 50.800000 IGS_089 igs rpl16|rps3 rpl16-rps3 84429 84539 0 111 LSC 0.009009 1 0 29 201 no 1.000000 2 1.000000 NA 1.000000 44.900000 rps3 gene rps3 rps3 84540 85196 -1 657 LSC 0.007610 5 0 25 49 no 1.000000 2 1.000000 NA 1.000000 50.000000 rpl22 gene rpl22 rpl22 85181 85216 -1 36 LSC 0.000000 0 0 44 29 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_091 igs rpl22|rps19 rpl22-rps19 85217 85754 0 538 LSC 0.021611 11 29 80 27 no 1.000000 2 1.000000 NA 0.946097 61.500000 IGS_092 igs rps19|rpl2 rps19-rpl2 86034 86095 0 62 IRb 0.000000 0 5 251 300 no 1.000000 2 1.000000 NA 0.919355 56.500000 rpl2 gene rpl2 rpl2 86096 87605 -1 1510 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 IGS_093 igs rpl2|rpl23 rpl2-rpl23 87606 87623 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 87624 87905 -1 282 IRb 0.000000 0 0 300 80 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_094 igs rpl23|trnI-CAU rpl23-trnI-CAU 87906 88349 0 444 IRb 0.004505 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.100000 trnI-CAU tRNA trnI-CAU trnI-CAU 88350 88423 -1 74 IRb 0.000000 0 0 95 300 no 0.000000 1 0.000000 NA 1.000000 25.900000 IGS_095 igs trnI-CAU|ycf2 trnI-CAU-ycf2 88424 88511 0 88 IRb 0.000000 0 0 169 300 no 0.000000 1 0.000000 NA 1.000000 31.400000 ycf2 gene ycf2 ycf2 88512 95351 1 6840 IRb 0.001316 9 0 257 119 no 1.000000 2 1.000000 NA 1.000000 47.200000 IGS_096 igs ycf2|trnL-CAA ycf2-trnL-CAA 95352 95930 0 579 IRb 0.001727 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.300000 trnL-CAA tRNA trnL-CAA trnL-CAA 95931 96011 -1 81 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_097 igs trnL-CAA|rps7 trnL-CAA-rps7 96012 99123 0 3112 IRb 0.001285 4 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 rps7 gene rps7 rps7 99124 99591 -1 468 IRb 0.000000 0 0 300 51 no 0.000000 1 0.000000 NA 1.000000 26.100000 IGS_098 igs rps7|rps12 rps7-rps12 99592 99645 0 54 IRb 0.018519 1 0 300 176 no 1.000000 2 1.000000 NA 1.000000 61.300000 rps12_part2 gene rps12 rps12 99646 100434 -1 789 IRb 0.002535 2 0 2 300 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_099 igs rps12|trnV-GAC rps12-trnV-GAC 100435 102258 0 1824 IRb 0.001656 3 12 300 300 no 1.000000 2 1.000000 NA 0.993421 59.700000 trnV-GAC tRNA trnV-GAC trnV-GAC 102259 102330 1 72 IRb 0.000000 0 0 266 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_100 igs trnV-GAC|rrn16 trnV-GAC-rrn16 102331 102552 0 222 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 102553 104043 1 1491 IRb 0.000671 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.100000 IGS_101 igs rrn16|trnI-GAU rrn16-trnI-GAU 104044 104338 0 295 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 104339 104375 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 105332 105366 1 35 IRb 0.000000 0 0 207 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_104 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 105367 105425 0 59 IRb 0.000000 0 0 242 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 105426 105463 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 106267 106301 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_107 igs trnA-UGC|rrn4.5 trnA-UGC-rrn4.5 106302 109371 0 3070 IRb 0.000326 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.700000 rrn4.5 rRNA rrn4.5 rrn4.5 109372 109475 1 104 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_108 igs rrn4.5|rrn5 rrn4.5-rrn5 109476 109700 0 225 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 109701 109821 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_109 igs rrn5|trnR-ACG rrn5-trnR-ACG 109822 110085 0 264 IRb 0.000000 0 0 300 227 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 110086 110159 1 74 IRb 0.000000 0 0 300 153 no 0.000000 1 0.000000 NA 1.000000 30.200000 IGS_110 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 110160 110782 0 623 IRb 0.008026 5 0 300 300 no 1.000000 2 1.000000 NA 1.000000 63.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 110783 110854 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_111 igs trnN-GUU|ycf1 trnN-GUU-ycf1 110855 111186 0 332 IRb 0.000000 0 0 300 9 no 0.000000 1 0.000000 NA 1.000000 20.100000 ycf1 gene ycf1 ycf1 111187 116514 1 5328 SSC 0.406610 1833 820 300 1 yes 1.000000 2 1.000000 NA 0.846096 74.500000 IGS_112 igs ycf1|rps15 ycf1-rps15 116515 116928 0 414 SSC 0.425876 158 43 1 0 yes 1.000000 2 1.000000 NA 0.896135 78.200000 rps15 gene rps15 rps15 116929 117195 1 267 SSC 0.484000 121 17 0 2 no 1.000000 2 1.000000 NA 0.936330 77.000000 IGS_113 igs rps15|ndhH rps15-ndhH 117196 117302 0 107 SSC 0.455446 46 6 7 1 yes 1.000000 2 1.000000 NA 0.943925 77.200000 ndhH gene ndhH ndhH 117303 118484 1 1182 SSC 0.494986 543 85 1 1 yes 1.000000 2 1.000000 NA 0.928088 83.100000 IGS_114 igs ndhH|ndhA ndhH-ndhA 118485 118485 0 1 SSC 0.000000 0 0 0 0 no 0.000000 1 0.000000 NA 1.000000 18.800000 ndhA gene ndhA ndhA 118486 120786 1 2301 SSC 0.449089 838 435 1 0 yes 1.000000 2 1.000000 NA 0.810952 78.000000 IGS_115 igs ndhA|ndhI ndhA-ndhI 120787 120865 0 79 SSC 0.492754 34 10 0 1 no 1.000000 2 1.000000 NA 0.873418 75.200000 ndhI gene ndhI ndhI 120866 121348 1 483 SSC 0.481928 200 68 15 0 yes 1.000000 2 1.000000 NA 0.859213 78.600000 IGS_116 igs ndhI|ndhG ndhI-ndhG 121349 121824 0 476 SSC 0.430233 185 46 2 1 yes 1.000000 2 1.000000 NA 0.903361 79.800000 ndhG gene ndhG ndhG 121825 122355 1 531 SSC 0.416290 184 89 3 0 yes 1.000000 2 1.000000 NA 0.832392 78.800000 IGS_117 igs ndhG|ndhE ndhG-ndhE 122356 122561 0 206 SSC 0.506410 79 50 2 0 no 1.000000 2 1.000000 NA 0.757282 71.900000 ndhE gene ndhE ndhE 122562 122867 1 306 SSC 0.486792 129 41 1 1 no 1.000000 2 1.000000 NA 0.866013 75.200000 IGS_118 igs ndhE|psaC ndhE-psaC 122868 123155 0 288 SSC 0.482353 123 33 0 2 no 1.000000 2 1.000000 NA 0.885417 75.500000 psaC gene psaC psaC 123156 123401 1 246 SSC 0.511236 91 68 0 0 yes 1.000000 2 1.000000 NA 0.723577 71.000000 IGS_119 igs psaC|ccsA psaC-ccsA 123402 125283 0 1882 SSC 0.472385 727 343 1 4 yes 1.000000 2 1.000000 NA 0.817747 79.200000 ccsA gene ccsA ccsA 125284 126255 -1 972 SSC 0.484061 410 125 0 0 yes 1.000000 2 1.000000 NA 0.871399 81.400000 IGS_120 igs ccsA|trnL-UAG ccsA-trnL-UAG 126256 126350 0 95 SSC 0.456522 21 49 1 0 no 1.000000 2 1.000000 NA 0.484211 66.100000 trnL-UAG tRNA trnL-UAG trnL-UAG 126351 126430 -1 80 SSC 0.567164 38 13 0 0 no 1.000000 2 1.000000 NA 0.837500 74.200000 IGS_121 igs trnL-UAG|rpl32 trnL-UAG-rpl32 126431 127103 0 673 SSC 0.427083 246 97 1 0 yes 1.000000 2 1.000000 NA 0.855869 80.900000 rpl32 gene rpl32 rpl32 127104 127250 -1 147 SSC 0.448980 66 0 5 0 no 1.000000 2 1.000000 NA 1.000000 72.500000 IGS_122 igs rpl32|ndhF rpl32-ndhF 127251 127880 0 630 SSC 0.372093 192 114 0 0 yes 1.000000 2 1.000000 NA 0.819048 79.900000 ndhF gene ndhF ndhF 127881 130106 1 2226 SSC 0.468097 851 408 1 1 yes 1.000000 2 1.000000 NA 0.816712 78.400000 IGS_123 igs ndhF|trnN-GUU ndhF-trnN-GUU 130107 130902 0 796 IRa 0.005025 4 0 3 300 no 1.000000 2 1.000000 NA 1.000000 46.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 130903 130974 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_124 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 130975 131597 0 623 IRa 0.008026 5 0 300 300 no 1.000000 2 1.000000 NA 1.000000 63.400000 trnR-ACG tRNA trnR-ACG trnR-ACG 131598 131671 -1 74 IRa 0.000000 0 0 153 300 no 0.000000 1 0.000000 NA 1.000000 30.200000 IGS_125 igs trnR-ACG|rrn5 trnR-ACG-rrn5 131672 131935 0 264 IRa 0.000000 0 0 227 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 131936 132056 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_126 igs rrn5|rrn4.5 rrn5-rrn4.5 132057 132281 0 225 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 132282 132385 -1 104 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_127 igs rrn4.5|trnA-UGC rrn4.5-trnA-UGC 132386 135455 0 3070 IRa 0.000326 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 55.700000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 135456 135490 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 136294 136331 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_130 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 136332 136390 0 59 IRa 0.000000 0 0 300 242 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 136391 136425 -1 35 IRa 0.000000 0 0 300 207 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 137382 137418 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_133 igs trnI-GAU|rrn16 trnI-GAU-rrn16 137419 137713 0 295 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 137714 139204 -1 1491 IRa 0.000671 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.100000 IGS_134 igs rrn16|trnV-GAC rrn16-trnV-GAC 139205 139426 0 222 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 139427 139498 -1 72 IRa 0.000000 0 0 300 266 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_135 igs trnV-GAC|rps12 trnV-GAC-rps12 139499 141322 0 1824 IRa 0.001656 3 12 300 300 no 1.000000 2 1.000000 NA 0.993421 59.700000 rps12_part2 gene rps12 rps12 141323 142111 1 789 IRa 0.002535 2 0 300 2 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_136 igs rps12|rps7 rps12-rps7 142112 142165 0 54 IRa 0.018519 1 0 176 300 no 1.000000 2 1.000000 NA 1.000000 61.300000 rps7 gene rps7 rps7 142166 142633 1 468 IRa 0.000000 0 0 51 300 no 0.000000 1 0.000000 NA 1.000000 26.100000 IGS_137 igs rps7|trnL-CAA rps7-trnL-CAA 142634 145745 0 3112 IRa 0.001285 4 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 145746 145826 1 81 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_138 igs trnL-CAA|ycf2 trnL-CAA-ycf2 145827 146405 0 579 IRa 0.001727 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.300000 ycf2 gene ycf2 ycf2 146406 153245 -1 6840 IRa 0.001316 9 0 119 257 no 1.000000 2 1.000000 NA 1.000000 47.200000 IGS_139 igs ycf2|trnI-CAU ycf2-trnI-CAU 153246 153333 0 88 IRa 0.000000 0 0 300 169 no 0.000000 1 0.000000 NA 1.000000 31.400000 trnI-CAU tRNA trnI-CAU trnI-CAU 153334 153407 1 74 IRa 0.000000 0 0 300 95 no 0.000000 1 0.000000 NA 1.000000 25.900000 IGS_140 igs trnI-CAU|rpl23 trnI-CAU-rpl23 153408 153851 0 444 IRa 0.004505 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 58.100000 rpl23 gene rpl23 rpl23 153852 154133 1 282 IRa 0.000000 0 0 80 300 no 0.000000 1 0.000000 NA 1.000000 24.800000 IGS_141 igs rpl23|rpl2 rpl23-rpl2 154134 154151 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 154152 155661 1 1510 IRa 0.000000 0 2 300 276 no 1.000000 2 1.000000 NA 0.998675 58.900000 IGS_142 igs rpl2|rps19 rpl2-rps19 155662 155723 0 62 IRa 0.000000 0 3 300 214 no 1.000000 2 1.000000 NA 0.951613 57.200000 rps19_part1 gene rps19 rps19 155724 155924 1 201 IRa 0.000000 0 0 300 13 no 0.000000 1 0.000000 NA 1.000000 19.700000