feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score rps19 gene rps19 rps19 4 282 1 279 LSC 0.007168 3 0 51 17 no 0.333333 2 0.500000 0.007168 1.000000 30.800000 IGS_001 igs rps19|rps3 rps19-rps3 283 580 0 298 LSC 0.017897 8 4 209 117 no 1.000000 3 1.000000 0.018019 1.000000 59.200000 rps3 gene rps3 rps3 581 1222 1 642 LSC 0.009346 9 0 2 4 no 1.000000 3 1.000000 0.009346 1.000000 49.900000 IGS_002 igs rps3|rpl16 rps3-rpl16 1223 1358 0 136 LSC 0.029412 6 3 186 41 no 1.000000 3 1.000000 0.029965 1.000000 61.900000 rpl16 gene rpl16 rpl16 1359 2905 1 1547 LSC 0.015544 36 19 29 32 yes 1.000000 3 1.000000 0.015667 0.998061 57.100000 IGS_003 igs rpl16|rpl14 rpl16-rpl14 2906 3038 0 133 LSC 0.036458 7 13 26 51 yes 1.000000 3 1.000000 0.038889 0.962406 66.800000 rpl14 gene rpl14 rpl14 3039 3407 1 369 LSC 0.003613 2 0 11 97 no 1.000000 3 1.000000 0.003613 1.000000 42.100000 IGS_004 igs rpl14|rps8 rpl14-rps8 3408 3668 0 261 LSC 0.024359 9 10 141 32 no 1.000000 3 1.000000 0.024968 0.996169 59.500000 rps8 gene rps8 rps8 3669 4073 1 405 LSC 0.011523 7 0 13 14 no 1.000000 3 1.000000 0.011523 1.000000 48.000000 IGS_005 igs rps8|rpl36 rps8-rpl36 4074 4539 0 466 LSC 0.017354 12 5 32 118 no 1.000000 3 1.000000 0.017354 0.989270 55.400000 rpl36 gene rpl36 rpl36 4540 4653 1 114 LSC 0.000000 0 0 139 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_006 igs rpl36|rps11 rpl36-rps11 4654 4974 0 321 LSC 0.030398 14 20 253 71 yes 1.000000 3 1.000000 0.031569 0.990654 67.800000 rps11 gene rps11 rps11 4975 5391 1 417 LSC 0.003197 2 0 20 15 no 1.000000 3 1.000000 0.003197 1.000000 43.100000 IGS_007 igs rps11|rpoA rps11-rpoA 5392 5466 0 75 LSC 0.031111 3 3 144 21 no 1.000000 3 1.000000 0.022778 1.000000 62.700000 rpoA gene rpoA rpoA 5467 6462 1 996 LSC 0.010040 15 0 10 5 yes 1.000000 3 1.000000 0.010040 1.000000 50.500000 IGS_008 igs rpoA|petD rpoA-petD 6463 6684 0 222 LSC 0.058104 19 10 11 90 yes 1.000000 3 1.000000 0.059217 0.981982 76.300000 petD gene petD petD 6685 7905 -1 1221 LSC 0.010383 18 13 2 44 no 1.000000 3 1.000000 0.009360 0.999181 51.600000 IGS_009 igs petD|petB petD-petB 7906 8119 0 214 LSC 0.035826 11 0 69 267 no 1.000000 3 1.000000 0.035826 1.000000 65.200000 petB gene petB petB 8120 9593 -1 1474 LSC 0.007251 16 12 16 97 no 1.000000 3 1.000000 0.007283 0.997965 50.500000 IGS_010 igs petB|psbH petB-psbH 9594 9728 0 135 LSC 0.004938 1 0 89 69 no 0.333333 2 0.500000 0.004938 1.000000 33.300000 psbH gene psbH psbH 9729 9950 -1 222 LSC 0.003003 1 0 37 102 no 0.333333 2 0.500000 0.003003 1.000000 29.700000 IGS_011 igs psbH|psbN psbH-psbN 9951 10060 0 110 LSC 0.012232 2 3 152 62 no 1.000000 3 1.000000 0.012404 0.990909 52.800000 psbN gene psbN psbN 10061 10192 1 132 LSC 0.005051 1 0 4 69 no 0.333333 2 0.500000 0.005051 1.000000 28.500000 IGS_012 igs psbN|psbT psbN-psbT 10193 10252 0 60 LSC 0.000000 0 0 69 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 psbT gene psbT psbT 10253 10360 -1 108 LSC 0.018519 3 0 129 46 no 1.000000 3 1.000000 0.018519 1.000000 52.800000 IGS_013 igs psbT|psbB psbT-psbB 10361 10546 0 186 LSC 0.003584 1 1 32 300 no 1.000000 3 1.000000 0.003594 1.000000 42.800000 psbB gene psbB psbB 10547 12076 -1 1530 LSC 0.001743 4 0 139 15 no 1.000000 3 1.000000 0.001743 1.000000 45.900000 IGS_014 igs psbB|clpP psbB-clpP 12077 12540 0 464 LSC 0.010057 7 2 300 105 no 1.000000 3 1.000000 0.010095 1.000000 55.700000 clpP gene clpP clpP 12541 14509 1 1969 LSC 0.011565 34 16 135 2 no 1.000000 3 1.000000 0.011593 0.995429 51.100000 IGS_015 igs clpP|rps12 clpP-rps12 14510 14700 0 191 LSC 0.008865 2 32 92 46 no 1.000000 3 1.000000 0.005643 0.984293 50.400000 rps12_part1 gene rps12 rps12 14701 14814 1 114 LSC 0.005848 1 0 95 41 no 0.333333 2 0.500000 0.005848 1.000000 31.800000 IGS_016 igs rps12|rpl20 rps12-rpl20 14815 15575 0 761 LSC 0.010512 12 3 67 38 no 1.000000 3 1.000000 0.010542 1.000000 53.800000 rpl20 gene rpl20 rpl20 15576 15932 1 357 LSC 0.013072 7 0 32 20 no 1.000000 3 1.000000 0.013072 1.000000 48.500000 IGS_017 igs rpl20|rps18 rpl20-rps18 15933 16182 0 250 LSC 0.024000 9 0 5 26 no 1.000000 3 1.000000 0.024000 1.000000 53.200000 rps18 gene rps18 rps18 16183 16491 -1 309 LSC 0.012945 6 0 26 129 no 1.000000 3 1.000000 0.012945 1.000000 47.900000 IGS_018 igs rps18|rpl33 rps18-rpl33 16492 16711 0 220 LSC 0.021505 7 5 40 25 no 1.000000 3 1.000000 0.021605 0.986364 55.300000 rpl33 gene rpl33 rpl33 16712 16915 -1 204 LSC 0.009804 3 0 1 0 no 1.000000 3 1.000000 0.009804 1.000000 43.700000 IGS_019 igs rpl33|psaJ rpl33-psaJ 16916 17400 0 485 LSC 0.032990 24 4 19 33 yes 1.000000 3 1.000000 0.033253 1.000000 64.800000 psaJ gene psaJ psaJ 17401 17535 -1 135 LSC 0.019753 4 0 58 30 no 1.000000 3 1.000000 0.019753 1.000000 52.300000 IGS_020 igs psaJ|trnP psaJ-trnP 17536 18018 0 483 LSC 0.021739 15 38 28 295 no 1.000000 3 1.000000 0.022214 0.952381 61.400000 trnP tRNA trnP trnP 18019 18092 1 74 LSC 0.000000 0 0 13 221 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_021 igs trnP|trnW trnP-trnW 18093 18214 0 122 LSC 0.000000 0 0 87 99 no 0.000000 1 0.000000 0.000000 1.000000 25.300000 trnW tRNA trnW trnW 18215 18288 1 74 LSC 0.000000 0 0 209 25 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_022 igs trnW|petG trnW-petG 18289 18316 0 28 LSC 0.023810 1 0 283 178 no 0.333333 2 0.500000 0.023810 1.000000 53.500000 petG gene petG petG 18317 18430 -1 114 LSC 0.000000 0 0 2 64 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_023 igs petG|petL petG-petL 18431 18593 0 163 LSC 0.032720 8 0 116 109 yes 1.000000 3 1.000000 0.032720 1.000000 66.500000 petL gene petL petL 18594 18689 -1 96 LSC 0.000000 0 0 8 13 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_024 igs petL|psbE petL-psbE 18690 20050 0 1361 LSC 0.011392 23 32 104 83 no 1.000000 3 1.000000 0.011503 0.988979 59.700000 psbE gene psbE psbE 20051 20302 1 252 LSC 0.010582 4 0 60 22 no 1.000000 3 1.000000 0.010582 1.000000 45.900000 IGS_025 igs psbE|psbF psbE-psbF 20303 20311 0 9 LSC 0.000000 0 0 30 13 no 0.000000 1 0.000000 NA 1.000000 19.700000 psbF gene psbF psbF 20312 20431 1 120 LSC 0.005556 1 0 39 140 no 0.333333 2 0.500000 0.005556 1.000000 31.500000 IGS_026 igs psbF|psbL psbF-psbL 20432 20453 0 22 LSC 0.000000 0 0 106 118 no 0.000000 1 0.000000 0.000000 1.000000 26.700000 psbL gene psbL psbL 20454 20570 1 117 LSC 0.000000 0 0 128 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_027 igs psbL|psbJ psbL-psbJ 20571 20694 0 124 LSC 0.005376 1 0 245 44 no 0.333333 2 0.500000 0.005376 1.000000 31.700000 psbJ gene psbJ psbJ 20695 20817 1 123 LSC 0.005420 1 0 122 4 no 0.333333 2 0.500000 0.005420 1.000000 28.800000 IGS_028 igs psbJ|petA psbJ-petA 20818 21991 0 1174 LSC 0.011386 20 3 78 259 no 1.000000 3 1.000000 0.011386 0.997445 57.100000 petA gene petA petA 21992 22954 -1 963 LSC 0.003461 5 0 42 86 no 1.000000 3 1.000000 0.003461 1.000000 49.100000 IGS_029 igs petA|cemA petA-cemA 22955 23126 0 172 LSC 0.003876 1 0 16 93 no 0.333333 2 0.500000 0.003876 1.000000 28.700000 cemA gene cemA cemA 23127 23816 -1 690 LSC 0.005797 6 0 85 7 no 1.000000 3 1.000000 0.005797 1.000000 48.000000 IGS_030 igs cemA|ycf4 cemA-ycf4 23817 24158 0 342 LSC 0.034314 17 16 238 36 yes 1.000000 3 1.000000 0.035193 0.994152 68.000000 ycf4 gene ycf4 ycf4 24159 24713 -1 555 LSC 0.003604 3 0 9 8 no 1.000000 3 1.000000 0.003604 1.000000 45.700000 IGS_031 igs ycf4|psaI ycf4-psaI 24714 24914 0 201 LSC 0.010000 3 1 153 163 no 1.000000 3 1.000000 0.010000 0.995025 55.800000 psaI gene psaI psaI 24915 25019 -1 105 LSC 0.000000 0 0 110 58 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_032 igs psaI|accD psaI-accD 25020 25271 0 252 LSC 0.031746 12 1 215 37 no 1.000000 3 1.000000 0.031867 1.000000 61.000000 accD gene accD accD 25272 26756 -1 1485 LSC 0.006734 15 0 35 35 no 1.000000 3 1.000000 0.006734 1.000000 50.700000 IGS_033 igs accD|trnQ accD-trnQ 26757 28693 0 1937 LSC 0.011974 27 1559 12 138 no 1.000000 3 1.000000 0.021158 0.977284 50.600000 trnQ tRNA trnQ trnQ 28694 28765 -1 72 LSC 0.000000 0 0 8 66 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_034 igs trnQ|psbK trnQ-psbK 28766 29243 0 478 LSC 0.011228 8 16 80 3 no 1.000000 3 1.000000 0.011470 0.993724 52.300000 psbK gene psbK psbK 29244 29429 1 186 LSC 0.007168 2 0 91 149 no 1.000000 3 1.000000 0.007168 1.000000 48.900000 IGS_035 igs psbK|psbI psbK-psbI 29430 29900 0 471 LSC 0.005698 4 6 174 15 no 1.000000 3 1.000000 0.005726 0.993631 47.100000 psbI gene psbI psbI 29901 30011 1 111 LSC 0.006006 1 0 21 0 no 0.333333 2 0.500000 0.006006 1.000000 28.800000 IGS_036 igs psbI|trnS psbI-trnS 30012 30231 0 220 LSC 0.019231 6 12 95 131 no 1.000000 3 1.000000 0.019231 0.945455 61.100000 trnS tRNA trnS trnS 30232 30311 -1 80 LSC 0.000000 0 0 20 51 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_037 igs trnS|ycf3 trnS-ycf3 30312 30594 0 283 LSC 0.014134 6 5 100 180 no 1.000000 3 1.000000 0.014261 1.000000 56.000000 ycf3 gene ycf3 ycf3 30595 32561 1 1967 LSC 0.007468 22 14 46 7 no 1.000000 3 1.000000 0.007494 0.998475 48.800000 IGS_038 igs ycf3|psaA ycf3-psaA 32562 33323 0 762 LSC 0.012248 14 5 111 181 no 1.000000 3 1.000000 0.012312 1.000000 60.600000 psaA gene psaA psaA 33324 35576 1 2253 LSC 0.005336 18 4 128 122 no 1.000000 3 1.000000 0.005336 0.998225 54.900000 IGS_039 igs psaA|psaB psaA-psaB 35577 35606 0 30 LSC 0.000000 0 1 104 92 no 0.333333 2 0.500000 0.000000 0.966667 35.000000 psaB gene psaB psaB 35607 37811 1 2205 LSC 0.004837 16 0 134 28 no 1.000000 3 1.000000 0.004837 1.000000 47.500000 IGS_040 igs psaB|rps14 psaB-rps14 37812 37947 0 136 LSC 0.015152 3 4 15 286 no 1.000000 3 1.000000 0.015152 0.970588 50.900000 rps14 gene rps14 rps14 37948 38250 1 303 LSC 0.002200 1 0 23 28 no 0.333333 2 0.500000 0.002200 1.000000 28.200000 IGS_041 igs rps14|trnfM rps14-trnfM 38251 38411 0 161 LSC 0.012422 3 0 16 91 no 1.000000 3 1.000000 0.012422 1.000000 46.600000 trnfM tRNA trnfM trnfM 38412 38485 1 74 LSC 0.000000 0 0 34 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_042 igs trnfM|trnG trnfM-trnG 38486 38612 0 127 LSC 0.039370 7 1 108 90 yes 1.000000 3 1.000000 0.034308 1.000000 69.800000 IGS_043 igs trnG|psbZ trnG-psbZ 38684 39043 0 360 LSC 0.011268 6 5 73 54 no 1.000000 3 1.000000 0.011268 0.986111 51.200000 psbZ gene psbZ psbZ 39044 39232 -1 189 LSC 0.003527 1 0 44 23 no 0.333333 2 0.500000 0.003527 1.000000 29.000000 IGS_044 igs psbZ|trnS psbZ-trnS 39233 39574 0 342 LSC 0.007913 4 6 134 113 no 1.000000 3 1.000000 0.007928 0.985380 53.500000 trnS tRNA trnS trnS 39575 39667 1 93 LSC 0.000000 0 0 45 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_045 igs trnS|psbD trnS-psbD 39668 41185 0 1518 LSC 0.006148 14 0 138 150 no 1.000000 3 1.000000 0.006148 1.000000 58.000000 psbD gene psbD psbD 41186 42247 -1 1062 LSC 0.004394 7 0 270 112 no 1.000000 3 1.000000 0.004394 1.000000 55.000000 IGS_046 igs psbD|trnT psbD-trnT 42248 43445 0 1198 LSC 0.011148 20 8 38 107 no 1.000000 3 1.000000 0.011192 0.998331 54.400000 trnT tRNA trnT trnT 43446 43517 -1 72 LSC 0.000000 0 0 97 35 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_047 igs trnT|trnE trnT-trnE 43518 44146 0 629 LSC 0.025478 24 1 169 78 no 1.000000 3 1.000000 0.025478 0.998410 66.000000 trnE tRNA trnE trnE 44147 44219 1 73 LSC 0.000000 0 0 91 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_048 igs trnE|trnY trnE-trnY 44220 44279 0 60 LSC 0.022222 2 0 164 120 no 1.000000 3 1.000000 0.022222 1.000000 60.700000 trnY tRNA trnY trnY 44280 44363 1 84 LSC 0.000000 0 0 15 36 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_049 igs trnY|trnD trnY-trnD 44364 44777 0 414 LSC 0.008130 5 10 99 118 no 1.000000 3 1.000000 0.008203 0.990338 55.000000 trnD tRNA trnD trnD 44778 44851 1 74 LSC 0.000000 0 0 129 44 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_050 igs trnD|psbM trnD-psbM 44852 45292 0 441 LSC 0.009112 6 8 203 8 no 1.000000 3 1.000000 0.009182 0.995465 48.800000 psbM gene psbM psbM 45293 45397 1 105 LSC 0.012698 2 0 27 5 no 0.333333 2 0.500000 0.012698 1.000000 33.500000 IGS_051 igs psbM|petN psbM-petN 45398 46545 0 1148 LSC 0.021487 37 3 87 92 yes 1.000000 3 1.000000 0.021527 1.000000 64.300000 petN gene petN petN 46546 46635 -1 90 LSC 0.000000 0 0 92 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_052 igs petN|trnC petN-trnC 46636 46923 0 288 LSC 0.018648 8 2 182 80 no 1.000000 3 1.000000 0.018648 0.993056 56.000000 trnC tRNA trnC trnC 46924 46994 -1 71 LSC 0.000000 0 0 29 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_053 igs trnC|rpoB trnC-rpoB 46995 47585 0 591 LSC 0.011280 10 2 100 44 no 1.000000 3 1.000000 0.011308 1.000000 54.400000 rpoB gene rpoB rpoB 47586 50798 1 3213 LSC 0.008092 39 0 3 13 no 1.000000 3 1.000000 0.008092 1.000000 45.700000 IGS_054 igs rpoB|rpoC1 rpoB-rpoC1 50799 50824 0 26 LSC 0.025641 1 0 114 81 no 0.333333 2 0.500000 0.025641 1.000000 47.400000 rpoC1 gene rpoC1 rpoC1 50825 53643 1 2819 LSC 0.008168 34 15 12 16 no 1.000000 3 1.000000 0.008191 0.998936 47.700000 IGS_055 igs rpoC1|rpoC2 rpoC1-rpoC2 53644 53849 0 206 LSC 0.022654 7 0 68 300 no 1.000000 3 1.000000 0.022654 1.000000 57.000000 rpoC2 gene rpoC2 rpoC2 53850 58016 1 4167 LSC 0.011119 69 0 2 31 no 1.000000 3 1.000000 0.011119 1.000000 46.000000 IGS_056 igs rpoC2|rps2 rpoC2-rps2 58017 58228 0 212 LSC 0.035256 9 9 7 10 no 1.000000 3 1.000000 0.026036 0.981132 63.600000 rps2 gene rps2 rps2 58229 58939 1 711 LSC 0.009376 10 0 21 24 no 1.000000 3 1.000000 0.009376 1.000000 51.300000 IGS_057 igs rps2|atpI rps2-atpI 58940 59199 0 260 LSC 0.005128 2 0 4 93 no 1.000000 3 1.000000 0.005128 1.000000 41.100000 atpI gene atpI atpI 59200 59943 1 744 LSC 0.006720 7 0 121 42 no 1.000000 3 1.000000 0.006720 1.000000 51.100000 IGS_058 igs atpI|atpH atpI-atpH 59944 61280 0 1337 LSC 0.019965 35 491 140 182 yes 1.000000 3 1.000000 0.022267 0.986537 68.600000 atpH gene atpH atpH 61281 61526 1 246 LSC 0.002710 1 0 13 15 no 0.333333 2 0.500000 0.002710 1.000000 27.700000 IGS_059 igs atpH|atpF atpH-atpF 61527 61603 0 77 LSC 0.008658 1 2 63 14 no 1.000000 3 1.000000 0.008773 1.000000 47.000000 atpF gene atpF atpF 61604 62902 1 1299 LSC 0.009252 18 8 61 231 no 1.000000 3 1.000000 0.009274 0.998460 54.900000 IGS_060 igs atpF|atpA atpF-atpA 62903 62963 0 61 LSC 0.000000 0 0 35 170 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 atpA gene atpA atpA 62964 64496 1 1533 LSC 0.005219 12 0 96 9 no 1.000000 3 1.000000 0.005219 1.000000 47.700000 IGS_061 igs atpA|trnR atpA-trnR 64497 64837 0 341 LSC 0.025415 12 47 96 97 no 1.000000 3 1.000000 0.023535 1.000000 66.200000 trnR tRNA trnR trnR 64838 64909 -1 72 LSC 0.000000 0 0 14 25 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_062 igs trnR|trnG trnR-trnG 64910 65059 0 150 LSC 0.057778 13 2 86 23 yes 1.000000 3 1.000000 0.058378 1.000000 74.100000 trnG_part2 tRNA trnG trnG 65060 65107 -1 48 LSC 0.013889 1 0 6 103 no 0.333333 2 0.500000 0.013889 1.000000 34.300000 trnG_part1 tRNA trnG trnG 65822 65844 -1 23 LSC 0.000000 0 0 196 42 no 0.000000 1 0.000000 0.000000 1.000000 21.900000 IGS_065 igs trnG|trnS trnG-trnS 65845 66666 0 822 LSC 0.029400 35 43 219 124 yes 1.000000 3 1.000000 0.029148 0.979319 76.800000 trnS tRNA trnS trnS 66667 66753 1 87 LSC 0.000000 0 0 18 37 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_066 igs trnS|rps4 trnS-rps4 66754 66970 0 217 LSC 0.018433 6 0 105 42 no 1.000000 3 1.000000 0.018433 1.000000 52.400000 rps4 gene rps4 rps4 66971 67582 -1 612 LSC 0.009804 9 0 101 20 no 1.000000 3 1.000000 0.009804 1.000000 51.500000 IGS_067 igs rps4|trnT rps4-trnT 67583 67860 0 278 LSC 0.032609 13 4 89 141 no 1.000000 3 1.000000 0.030347 0.992806 66.200000 trnT tRNA trnT trnT 67861 67933 -1 73 LSC 0.000000 0 0 28 68 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_068 igs trnT|trnL trnT-trnL 67934 68555 0 622 LSC 0.017149 16 5 101 158 no 1.000000 3 1.000000 0.017262 1.000000 63.200000 trnL_part1 tRNA trnL trnL 68556 68590 1 35 LSC 0.000000 0 0 33 123 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 trnL_part2 tRNA trnL trnL 69079 69128 1 50 LSC 0.000000 0 0 121 53 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_071 igs trnL|trnF trnL-trnF 69129 69532 0 404 LSC 0.016708 9 18 171 110 no 1.000000 3 1.000000 0.013634 0.987624 63.000000 trnF tRNA trnF trnF 69533 69605 1 73 LSC 0.000000 0 0 87 37 no 0.000000 1 0.000000 0.000000 1.000000 21.500000 IGS_072 igs trnF|ndhJ trnF-ndhJ 69606 70209 0 604 LSC 0.030353 27 27 160 12 yes 1.000000 3 1.000000 0.030031 1.000000 69.000000 ndhJ gene ndhJ ndhJ 70210 70686 -1 477 LSC 0.005590 4 0 96 105 no 0.333333 2 0.500000 0.005590 1.000000 39.500000 IGS_073 igs ndhJ|ndhK ndhJ-ndhK 70687 70795 0 109 LSC 0.006173 1 1 217 55 no 1.000000 3 1.000000 0.006173 0.990826 46.400000 ndhK gene ndhK ndhK 70796 71485 -1 690 LSC 0.010628 11 0 3 35 no 1.000000 3 1.000000 0.010628 1.000000 50.800000 IGS_074 igs ndhK|ndhC ndhK-ndhC 71486 71528 0 43 LSC 0.015873 1 2 56 63 no 1.000000 3 1.000000 0.016067 0.976744 56.500000 ndhC gene ndhC ndhC 71529 71891 -1 363 LSC 0.012856 7 0 7 3 no 1.000000 3 1.000000 0.012856 1.000000 47.200000 IGS_075 igs ndhC|trnV ndhC-trnV 71892 72352 0 461 LSC 0.013333 9 35 77 14 no 1.000000 3 1.000000 0.013936 0.976139 55.300000 trnV_part2 tRNA trnV trnV 72353 72387 -1 35 LSC 0.019048 1 0 11 149 no 0.333333 2 0.500000 0.019048 1.000000 38.000000 trnV_part1 tRNA trnV trnV 72961 72999 -1 39 LSC 0.000000 0 0 45 77 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_078 igs trnV|trnM trnV-trnM 73000 73198 0 199 LSC 0.015075 4 6 84 0 no 1.000000 3 1.000000 0.012002 1.000000 50.300000 trnM tRNA trnM trnM 73199 73271 1 73 LSC 0.027397 3 0 0 27 no 1.000000 3 1.000000 0.027397 1.000000 55.000000 IGS_079 igs trnM|atpE trnM-atpE 73272 73405 0 134 LSC 0.069652 14 1 29 165 yes 1.000000 3 1.000000 0.070026 1.000000 75.500000 atpE gene atpE atpE 73406 73786 -1 381 LSC 0.005249 3 0 5 300 no 1.000000 3 1.000000 0.005249 1.000000 42.900000 IGS_080 igs atpE|atpB atpE-atpB 73787 73803 0 17 LSC 0.000000 0 0 56 300 no 0.000000 1 0.000000 NA 1.000000 22.900000 atpB gene atpB atpB 73804 75300 -1 1497 LSC 0.003117 7 0 73 30 no 1.000000 3 1.000000 0.003117 1.000000 48.000000 IGS_081 igs atpB|rbcL atpB-rbcL 75301 76089 0 789 LSC 0.022053 24 12 59 110 yes 1.000000 3 1.000000 0.019662 0.996198 63.600000 rbcL gene rbcL rbcL 76090 77517 1 1428 LSC 0.005135 11 0 151 28 no 1.000000 3 1.000000 0.005135 1.000000 49.100000 IGS_082 igs rbcL|trnK rbcL-trnK 77518 78323 0 806 LSC 0.023160 27 5 14 15 no 1.000000 3 1.000000 0.022415 1.000000 60.100000 trnK_part1 tRNA trnK trnK 78324 78360 1 37 LSC 0.018018 1 0 13 6 no 0.333333 2 0.500000 0.018018 1.000000 36.900000 matK gene matK matK 79121 80641 1 1521 LSC 0.012273 28 0 28 5 no 1.000000 3 1.000000 0.012273 1.000000 51.900000 IGS_085 igs matK|trnK matK-trnK 80642 80965 0 324 LSC 0.015723 7 22 25 104 no 1.000000 3 1.000000 0.014101 0.981481 54.800000 trnK_part2 tRNA trnK trnK 80966 81000 1 35 LSC 0.000000 0 0 143 69 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 IGS_086 igs trnK|psbA trnK-psbA 81001 81286 0 286 LSC 0.022222 9 3 178 236 no 1.000000 3 1.000000 0.019966 0.996503 65.900000 psbA gene psbA psbA 81287 82348 1 1062 LSC 0.006277 10 0 30 9 no 1.000000 3 1.000000 0.006277 1.000000 48.400000 IGS_087 igs psbA|trnH psbA-trnH 82349 82619 0 271 LSC 0.053086 20 17 3 98 yes 1.000000 3 1.000000 0.047470 0.996310 75.000000 trnH tRNA trnH trnH 82620 82694 1 75 LSC 0.000000 0 0 17 23 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_088 igs trnH|rpl2 trnH-rpl2 82695 82803 0 109 LSC 0.041237 6 14 92 69 yes 1.000000 3 1.000000 0.041816 0.889908 70.500000 rpl2 gene rpl2 rpl2 82804 84306 -1 1503 LSC 0.001774 4 6 1 25 no 1.000000 3 1.000000 0.001779 1.000000 45.400000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 84307 84324 0 18 LSC 0.000000 0 0 195 7 no 0.000000 1 0.000000 NA 1.000000 19.300000 rpl23 gene rpl23 rpl23 84325 84606 -1 282 LSC 0.002364 1 0 213 264 no 0.333333 2 0.500000 0.002364 1.000000 41.500000 IGS_090 igs rpl23|trnI rpl23-trnI 84607 85056 0 450 LSC 0.002963 2 0 274 300 no 0.333333 2 0.500000 0.002963 1.000000 45.000000 IGS_091 igs trnI|ycf2 trnI-ycf2 85131 85230 0 100 LSC 0.000000 0 0 149 300 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 ycf2 gene ycf2 ycf2 85231 92253 1 7023 IRb 0.003139 33 117 249 300 no 1.000000 3 1.000000 0.003174 0.997864 56.400000 IGS_092 igs ycf2|trnL ycf2-trnL 92254 92832 0 579 IRb 0.002303 2 0 202 300 no 1.000000 3 1.000000 0.002303 1.000000 59.800000 IGS_093 igs trnL|ndhB trnL-ndhB 92914 93491 0 578 IRb 0.001153 1 8 269 300 no 0.333333 2 0.500000 0.001170 1.000000 48.100000 ndhB gene ndhB ndhB 93492 95645 -1 2154 IRb 0.000619 2 0 16 250 no 0.333333 2 0.500000 0.000619 1.000000 31.500000 IGS_094 igs ndhB|rps7 ndhB-rps7 95646 96024 0 379 IRb 0.003518 2 0 56 261 no 1.000000 3 1.000000 0.003518 1.000000 45.600000 rps7 gene rps7 rps7 96025 96492 -1 468 IRb 0.002849 2 0 97 190 no 1.000000 3 1.000000 0.002849 1.000000 50.100000 IGS_095 igs rps7|trnV rps7-trnV 96493 99200 0 2708 IRb 0.004802 19 22 146 35 no 1.000000 3 1.000000 0.004582 0.999631 47.800000 IGS_096 igs trnV|16S ribosomal RNA trnV-16S ribosomal RNA 99273 99493 0 221 IRb 0.003017 1 0 36 300 no 0.333333 2 0.500000 0.003017 1.000000 29.600000 16S ribosomal RNA rRNA 16S ribosomal RNA 16S ribosomal RNA 99494 100984 1 1491 IRb 0.000000 0 0 177 177 no 0.000000 1 0.000000 0.000000 1.000000 38.300000 IGS_097 igs 16S ribosomal RNA|trnI 16S ribosomal RNA-trnI 100985 101277 0 293 IRb 0.004551 2 1 300 300 no 1.000000 3 1.000000 0.004562 1.000000 55.800000 trnI_part1 tRNA trnI trnI 101278 101314 1 37 IRb 0.000000 0 0 73 300 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 trnI_part2 tRNA trnI trnI 102267 102301 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_100 igs trnI|trnA trnI-trnA 102302 102360 0 59 IRb 0.000000 0 0 300 252 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 102361 102398 1 38 IRb 0.000000 0 0 300 214 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 103229 103263 1 35 IRb 0.000000 0 0 235 145 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 IGS_103 igs trnA|23S ribosomal RNA trnA-23S ribosomal RNA 103264 103415 0 152 IRb 0.004386 1 0 270 300 no 0.333333 2 0.500000 0.004386 1.000000 42.800000 23S ribosomal RNA rRNA 23S ribosomal RNA 23S ribosomal RNA 103416 106230 1 2815 IRb 0.000710 3 0 6 44 no 0.333333 2 0.500000 0.000710 1.000000 29.400000 IGS_104 igs 23S ribosomal RNA|4.5S ribosomal RNA 23S ribosomal RNA-4.5S ribosomal RNA 106231 106328 0 98 IRb 0.006803 1 0 162 76 no 0.333333 2 0.500000 0.006803 1.000000 35.000000 4.5S ribosomal RNA rRNA 4.5S ribosomal RNA 4.5S ribosomal RNA 106329 106432 1 104 IRb 0.006410 1 0 53 213 no 0.333333 2 0.500000 0.006410 1.000000 33.100000 IGS_105 igs 4.5S ribosomal RNA|5S ribosomal RNA 4.5S ribosomal RNA-5S ribosomal RNA 106433 106672 0 240 IRb 0.002778 1 9 27 212 no 1.000000 3 1.000000 0.002880 1.000000 45.600000 5S ribosomal RNA rRNA 5S ribosomal RNA 5S ribosomal RNA 106673 106793 1 121 IRb 0.000000 0 0 26 91 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_106 igs 5S ribosomal RNA|trnR 5S ribosomal RNA-trnR 106794 107048 0 255 IRb 0.007843 3 0 147 104 no 1.000000 3 1.000000 0.007843 1.000000 50.300000 trnR tRNA trnR trnR 107049 107122 1 74 IRb 0.000000 0 0 1 30 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_107 igs trnR|trnN trnR-trnN 107123 107691 0 569 IRb 0.012911 11 1 75 148 no 1.000000 3 1.000000 0.012911 0.998243 57.100000 trnN tRNA trnN trnN 107692 107763 -1 72 IRb 0.000000 0 0 4 76 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_108 igs trnN|ycf1 trnN-ycf1 107764 108171 0 408 IRb 0.015523 9 4 76 12 no 1.000000 3 1.000000 0.015652 1.000000 51.500000 ycf1 gene ycf1 ycf1 108172 113487 1 5316 SSC 0.016573 132 33 17 33 no 1.000000 3 1.000000 0.016633 0.998871 50.000000 IGS_109 igs ycf1|rps15 ycf1-rps15 113488 113911 0 424 SSC 0.033885 19 19 4 23 yes 1.000000 3 1.000000 0.026897 0.997642 66.300000 rps15 gene rps15 rps15 113912 114187 1 276 SSC 0.007246 3 0 16 68 no 1.000000 3 1.000000 0.007246 1.000000 43.300000 IGS_110 igs rps15|ndhH rps15-ndhH 114188 114306 0 119 SSC 0.006116 1 21 5 294 no 1.000000 3 1.000000 0.006702 0.915966 44.200000 ndhH gene ndhH ndhH 114307 115488 1 1182 SSC 0.008460 15 0 50 28 no 1.000000 3 1.000000 0.008460 1.000000 51.200000 IGS_111 igs ndhH|ndhA ndhH-ndhA 115489 115489 0 1 SSC 0.000000 0 0 111 27 no 0.000000 1 0.000000 NA 1.000000 20.800000 ndhA gene ndhA ndhA 115490 117729 1 2240 SSC 0.012798 42 15 112 235 no 1.000000 3 1.000000 0.012268 1.000000 59.500000 IGS_112 igs ndhA|ndhI ndhA-ndhI 117730 117800 0 71 SSC 0.000000 0 0 134 164 no 0.000000 1 0.000000 0.000000 1.000000 28.800000 ndhI gene ndhI ndhI 117801 118298 1 498 SSC 0.008032 6 0 205 3 no 1.000000 3 1.000000 0.008032 1.000000 47.000000 IGS_113 igs ndhI|ndhG ndhI-ndhG 118299 118650 0 352 SSC 0.042146 21 16 13 17 yes 1.000000 3 1.000000 0.041111 0.988636 70.900000 ndhG gene ndhG ndhG 118651 119181 1 531 SSC 0.008788 7 0 17 28 no 1.000000 3 1.000000 0.008788 1.000000 49.200000 IGS_114 igs ndhG|ndhE ndhG-ndhE 119182 119424 0 243 SSC 0.024691 9 0 174 71 no 1.000000 3 1.000000 0.024691 1.000000 58.600000 ndhE gene ndhE ndhE 119425 119730 1 306 SSC 0.008715 4 0 58 3 no 0.333333 2 0.500000 0.008715 1.000000 30.900000 IGS_115 igs ndhE|psaC ndhE-psaC 119731 119994 0 264 SSC 0.017677 7 0 18 122 no 1.000000 3 1.000000 0.017677 1.000000 50.100000 psaC gene psaC psaC 119995 120240 1 246 SSC 0.002710 1 0 1 20 no 0.333333 2 0.500000 0.002710 1.000000 26.800000 IGS_116 igs psaC|ccsA psaC-ccsA 120241 122169 0 1929 SSC 0.013867 40 13 123 269 no 1.000000 3 1.000000 0.013907 0.996890 61.600000 ccsA gene ccsA ccsA 122170 123132 -1 963 SSC 0.009000 13 0 6 16 no 1.000000 3 1.000000 0.009000 1.000000 49.900000 IGS_117 igs ccsA|trnL ccsA-trnL 123133 123232 0 100 SSC 0.013333 2 5 83 30 no 1.000000 3 1.000000 0.013684 1.000000 54.000000 IGS_118 igs trnL|rpl32 trnL-rpl32 123313 123590 0 278 SSC 0.026379 11 0 49 104 no 1.000000 3 1.000000 0.026379 1.000000 58.000000 rpl32 gene rpl32 rpl32 123591 123770 -1 180 SSC 0.007407 2 0 16 67 no 0.333333 2 0.500000 0.007407 1.000000 30.900000 IGS_119 igs rpl32|ndhF rpl32-ndhF 123771 124440 0 670 SSC 0.019520 19 14 68 130 no 1.000000 3 1.000000 0.018712 0.994030 63.400000 ndhF gene ndhF ndhF 124441 126693 1 2253 SSC 0.012132 41 0 18 8 no 1.000000 3 1.000000 0.012132 1.000000 50.500000 IGS_120 igs ndhF|trnN-GUU ndhF-trnN-GUU 126694 128157 0 1464 IRa 0.013889 30 4 26 76 no 1.000000 3 1.000000 0.013920 1.000000 54.800000 trnN-GUU tRNA trnN-GUU trnN-GUU 128158 128229 1 72 IRa 0.000000 0 0 76 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_121 igs trnN-GUU|trnR trnN-GUU-trnR 128230 128798 0 569 IRa 0.012911 11 1 148 75 no 1.000000 3 1.000000 0.012911 0.998243 57.100000 trnR tRNA trnR trnR 128799 128872 -1 74 IRa 0.000000 0 0 30 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_122 igs trnR|5S ribosomal RNA trnR-5S ribosomal RNA 128873 129127 0 255 IRa 0.007843 3 0 104 147 no 1.000000 3 1.000000 0.007843 1.000000 50.300000 5S ribosomal RNA rRNA 5S ribosomal RNA 5S ribosomal RNA 129128 129248 -1 121 IRa 0.000000 0 0 91 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_123 igs 5S ribosomal RNA|4.5S ribosomal RNA 5S ribosomal RNA-4.5S ribosomal RNA 129249 129488 0 240 IRa 0.002789 1 8 212 27 no 1.000000 3 1.000000 0.002874 0.995833 45.000000 4.5S ribosomal RNA rRNA 4.5S ribosomal RNA 4.5S ribosomal RNA 129489 129592 -1 104 IRa 0.006410 1 0 213 53 no 0.333333 2 0.500000 0.006410 1.000000 33.100000 IGS_124 igs 4.5S ribosomal RNA|23S ribosomal RNA 4.5S ribosomal RNA-23S ribosomal RNA 129593 129690 0 98 IRa 0.006803 1 0 76 162 no 0.333333 2 0.500000 0.006803 1.000000 35.000000 23S ribosomal RNA rRNA 23S ribosomal RNA 23S ribosomal RNA 129691 132505 -1 2815 IRa 0.000710 3 0 44 6 no 0.333333 2 0.500000 0.000710 1.000000 29.400000 IGS_125 igs 23S ribosomal RNA|trnA 23S ribosomal RNA-trnA 132506 132657 0 152 IRa 0.004386 1 0 300 270 no 0.333333 2 0.500000 0.004386 1.000000 42.800000 trnA_part2 tRNA trnA trnA 132658 132692 -1 35 IRa 0.000000 0 0 145 235 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 trnA_part1 tRNA trnA trnA 133523 133560 -1 38 IRa 0.000000 0 0 214 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_128 igs trnA|trnI trnA-trnI 133561 133619 0 59 IRa 0.000000 0 0 252 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 133620 133654 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 134602 134643 -1 42 IRa 0.000000 0 0 300 73 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 IGS_131 igs trnI|16S ribosomal RNA trnI-16S ribosomal RNA 134644 134936 0 293 IRa 0.004551 2 1 300 300 no 1.000000 3 1.000000 0.004562 1.000000 55.800000 16S ribosomal RNA rRNA 16S ribosomal RNA 16S ribosomal RNA 134937 136427 -1 1491 IRa 0.000000 0 0 177 177 no 0.000000 1 0.000000 0.000000 1.000000 38.300000 IGS_132 igs 16S ribosomal RNA|trnV 16S ribosomal RNA-trnV 136428 136648 0 221 IRa 0.003017 1 0 300 36 no 0.333333 2 0.500000 0.003017 1.000000 29.600000 IGS_133 igs trnV|rps12 trnV-rps12 136721 138578 0 1858 IRa 0.005750 16 7 35 300 no 1.000000 3 1.000000 0.005759 0.998385 49.700000 rps12_part2 gene rps12 rps12 138579 138821 1 243 IRa 0.000000 0 0 235 192 no 0.000000 1 0.000000 0.000000 1.000000 33.100000 IGS_134 igs rps12|rps7 rps12-rps7 138822 139428 0 607 IRa 0.002197 2 13 300 146 no 1.000000 3 1.000000 0.002233 1.000000 58.600000 rps7 gene rps7 rps7 139429 139896 1 468 IRa 0.002849 2 0 190 97 no 1.000000 3 1.000000 0.002849 1.000000 50.100000 IGS_135 igs rps7|ndhB rps7-ndhB 139897 140275 0 379 IRa 0.003518 2 0 261 56 no 1.000000 3 1.000000 0.003518 1.000000 45.600000 ndhB gene ndhB ndhB 140276 142429 1 2154 IRa 0.000619 2 0 250 16 no 0.333333 2 0.500000 0.000619 1.000000 31.500000 IGS_136 igs ndhB|trnL ndhB-trnL 142430 143007 0 578 IRa 0.001153 1 8 300 269 no 0.333333 2 0.500000 0.001170 1.000000 48.100000 IGS_137 igs trnL|ycf2 trnL-ycf2 143089 143667 0 579 IRa 0.002303 2 0 300 202 no 1.000000 3 1.000000 0.002303 1.000000 59.800000 ycf2 gene ycf2 ycf2 143668 150690 -1 7023 IRa 0.003282 34 117 300 249 no 1.000000 3 1.000000 0.003222 0.997864 56.400000 IGS_138 igs ycf2|trnI ycf2-trnI 150691 150790 0 100 LSC 0.000000 0 0 300 149 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 IGS_139 igs trnI|rpl23 trnI-rpl23 150865 151314 0 450 LSC 0.002963 2 0 300 274 no 0.333333 2 0.500000 0.002963 1.000000 45.000000 rpl23 gene rpl23 rpl23 151315 151596 1 282 LSC 0.002364 1 0 264 213 no 0.333333 2 0.500000 0.002364 1.000000 41.500000 IGS_140 igs rpl23|rpl2 rpl23-rpl2 151597 151614 0 18 LSC 0.000000 0 0 7 195 no 0.000000 1 0.000000 NA 1.000000 19.300000 rpl2 gene rpl2 rpl2 151615 153117 1 1503 LSC 0.001774 4 6 25 1 no 1.000000 3 1.000000 0.001779 1.000000 45.400000 IGS_141 igs rpl2|rps19 rpl2-rps19 153118 3 0 68 LSC 0.021164 2 7 69 13 no 1.000000 3 1.000000 0.021684 0.926471 55.200000