primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnK-UUU-rps16_p1 trnK-UUU-rps16 1 AAAGCCGAGTACTCTACCGT AGAAAGGAAAAACAAGAATCATGA 20 24 50.0 29.2 58.2 55.2 20.3 0.0 6.971417 4948 5499 521-799 0.931818 49.3 trnK-UUU-rps16_p2 trnK-UUU-rps16 2 AAGCCGAGTACTCTACCGTT AGAAAGGAAAAACAAGAATCATGA 20 24 50.0 29.2 58.2 55.2 20.3 0.0 6.971417 4948 5499 520-798 0.931818 49.3 trnK-UUU-rps16_p3 trnK-UUU-rps16 3 TACCGTTGAGTTAGCAACCC AGAAAGGAAAAACAAGAATCATGA 20 24 50.0 29.2 57.5 55.2 0.0 0.0 7.263754 4948 5499 507-785 0.931818 49.3 trnK-UUU-rps16_p4 trnK-UUU-rps16 4 AAAGCCGAGTACTCTACCGT AAGAAAGGAAAAACAAGAATCATGA 20 25 50.0 28.0 58.2 55.9 20.3 0.0 7.282181 4948 5499 522-800 0.931818 49.3 trnK-UUU-rps16_p5 trnK-UUU-rps16 5 AAGCCGAGTACTCTACCGTT AAGAAAGGAAAAACAAGAATCATGA 20 25 50.0 28.0 58.2 55.9 20.3 0.0 7.282181 4948 5499 521-799 0.931818 49.3 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 AAGTCGCACGTTGCTTTCTA ACCAACTAAAAATGGGGCGT 20 20 45.0 45.0 58.1 58.0 8.1 0.0 0.143261 6643 7590 929-1158 1.000000 90.9 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 TCATGTCCTTCAAGTCGCAC ACCAACTAAAAATGGGGCGT 20 20 50.0 45.0 58.2 58.0 0.0 0.0 0.208169 6643 7590 940-1169 1.000000 90.3 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 6643 7590 869-1098 1.000000 90.3 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 TCATGTCCTTCAAGTCGCAC GAGGTTCGAATCCTTCCGTC 20 20 50.0 55.0 58.2 58.1 0.0 16.9 0.280333 6643 7590 880-1109 1.000000 89.8 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 AAGTCGCACGTTGCTTTCTA CAACTAAAAATGGGGCGTGG 20 20 45.0 50.0 58.1 57.6 8.1 0.0 0.501493 6643 7590 927-1156 1.000000 88.0 trnS-GCU-trnR-UCU_p1 trnS-GCU-trnR-UCU 1 CAATCCGACGCTTTAGTCCA AGAAGACCTCTGTCCTATCCA 20 21 50.0 47.6 58.0 56.9 0.0 0.0 2.056187 9010 10553 1530-1739 1.000000 75.6 trnS-GCU-trnR-UCU_p2 trnS-GCU-trnR-UCU 2 AATCCGACGCTTTAGTCCAC AGAAGACCTCTGTCCTATCCA 20 21 50.0 47.6 58.0 56.9 0.0 0.0 2.057575 9010 10553 1529-1738 1.000000 75.5 trnS-GCU-trnR-UCU_p3 trnS-GCU-trnR-UCU 3 CAATCCGACGCTTTAGTCCA AGGTTTAGAAGACCTCTGTCCT 20 22 50.0 45.5 58.0 57.9 0.0 0.0 2.139515 9010 10553 1536-1745 1.000000 74.9 trnS-GCU-trnR-UCU_p4 trnS-GCU-trnR-UCU 4 AATCCGACGCTTTAGTCCAC AGGTTTAGAAGACCTCTGTCCT 20 22 50.0 45.5 58.0 57.9 0.0 0.0 2.140903 9010 10553 1535-1744 1.000000 74.9 trnS-GCU-trnR-UCU_p5 trnS-GCU-trnR-UCU 5 AGCAATCCGACGCTTTAGTC AGAAGACCTCTGTCCTATCCA 20 21 50.0 47.6 58.4 56.9 0.0 0.0 2.410028 9010 10553 1532-1741 1.000000 72.7 atpH-atpI_p1 atpH-atpI 1 CGCAATACCTTCTACGGCTT AACTTTGGCTGCGGCTTATA 20 20 50.0 45.0 58.1 57.9 0.0 18.8 0.186851 14256 14839 706-830 1.000000 89.7 atpH-atpI_p2 atpH-atpI 2 TCCGATAGAAGCAAGCCCTA AACTTTGGCTGCGGCTTATA 20 20 50.0 45.0 57.9 57.9 0.0 18.8 0.204923 14256 14839 655-779 1.000000 89.7 atpH-atpI_p3 atpH-atpI 3 AGCCAATCCAGCAGCAATAA AACTTTGGCTGCGGCTTATA 20 20 45.0 45.0 57.9 57.9 0.0 18.8 0.271229 14256 14839 634-758 1.000000 89.3 atpH-atpI_p4 atpH-atpI 4 CCGATAGAAGCAAGCCCTAC AACTTTGGCTGCGGCTTATA 20 20 55.0 45.0 57.8 57.9 0.0 18.8 0.279126 14256 14839 654-778 1.000000 89.0 atpH-atpI_p5 atpH-atpI 5 GCCAATCCAGCAGCAATAAC AACTTTGGCTGCGGCTTATA 20 20 50.0 45.0 57.8 57.9 0.0 18.8 0.337170 14256 14839 633-757 1.000000 88.8 rpoB-trnC-GCA_p1 rpoB-trnC-GCA 1 GTGGACATTCCCTCATTTCCA TAAAGGATTTGCAGTCCCCC 21 20 47.6 50.0 57.9 57.5 0.0 14.6 1.611057 27216 28682 1311-1562 0.931818 76.4 rpoB-trnC-GCA_p2 rpoB-trnC-GCA 2 TGTGGACATTCCCTCATTTCC TAAAGGATTTGCAGTCCCCC 21 20 47.6 50.0 57.9 57.5 0.0 14.6 1.611057 27216 28682 1312-1563 0.931818 76.4 rpoB-trnC-GCA_p3 rpoB-trnC-GCA 3 GTGGACATTCCCTCATTTCCA CGACACCCAGATTCGAACTG 21 20 47.6 55.0 57.9 58.6 0.0 16.2 1.735759 27216 28682 1335-1586 0.954545 76.3 rpoB-trnC-GCA_p4 rpoB-trnC-GCA 4 TGTGGACATTCCCTCATTTCC CGACACCCAGATTCGAACTG 21 20 47.6 55.0 57.9 58.6 0.0 16.2 1.735759 27216 28682 1336-1587 0.954545 76.3 rpoB-trnC-GCA_p5 rpoB-trnC-GCA 5 CCAGGTATTGTGGACATTCCC TAAAGGATTTGCAGTCCCCC 21 20 52.4 50.0 58.3 57.5 0.0 14.6 1.870242 27216 28682 1151-1571 0.977273 76.1 psbM-petN_p1 psbM-petN 1 CTTGCGCTTATTGCTACTGC TAGTAAGTCTCGCTTGGGCT 20 20 50.0 50.0 57.9 58.2 9.7 0.0 0.248147 29845 30647 612-1012 1.000000 90.0 psbM-petN_p2 psbM-petN 2 CTTGCGCTTATTGCTACTGC AGGGGACATCATTTGCATGG 20 20 50.0 50.0 57.9 58.2 9.7 0.0 0.312441 29845 30647 635-1035 1.000000 89.5 psbM-petN_p3 psbM-petN 3 CTTGCGCTTATTGCTACTGC GGGGACATCATTTGCATGGA 20 20 50.0 50.0 57.9 58.2 9.7 0.0 0.317578 29845 30647 634-1034 1.000000 89.5 psbM-petN_p4 psbM-petN 4 ACGTCAAAACAGTCAGCCAA TAGTAAGTCTCGCTTGGGCT 20 20 45.0 50.0 58.3 58.2 0.0 0.0 0.406116 29845 30647 551-951 1.000000 88.8 psbM-petN_p5 psbM-petN 5 ATTGCTACTGCGCTGTTCAT TAGTAAGTCTCGCTTGGGCT 20 20 45.0 50.0 58.3 58.2 25.3 0.0 0.408587 29845 30647 603-1003 1.000000 88.7 trnT-UGU-trnL-UAA_p1 trnT-UGU-trnL-UAA 1 GCGATGCTCTAACCTCTGAG ACCAATTTCGCCATATCCCC 20 20 55.0 50.0 57.9 58.0 0.0 0.0 0.137364 47760 48355 616-715 1.000000 90.9 trnT-UGU-trnL-UAA_p2 trnT-UGU-trnL-UAA 2 GCGATGCTCTAACCTCTGAG TAGCGTCTACCAATTTCGCC 20 20 55.0 50.0 57.9 58.1 0.0 0.0 0.202173 47760 48355 624-723 1.000000 90.4 trnT-UGU-trnL-UAA_p3 trnT-UGU-trnL-UAA 3 GGAATCGAACCGATGACCAT ACCAATTTCGCCATATCCCC 20 20 50.0 50.0 57.8 58.0 15.5 0.0 0.245117 47760 48355 648-747 1.000000 90.0 trnT-UGU-trnL-UAA_p4 trnT-UGU-trnL-UAA 4 AGAAAAAGAGCCGGCTATCG ACCAATTTCGCCATATCCCC 20 20 50.0 50.0 58.1 58.0 33.0 0.0 0.063299 47760 48355 667-766 0.931818 88.8 trnT-UGU-trnL-UAA_p5 trnT-UGU-trnL-UAA 5 AGAAAAAGAGCCGGCTATCG TAGCGTCTACCAATTTCGCC 20 20 50.0 50.0 58.1 58.1 33.0 0.0 0.128108 47760 48355 675-774 0.931818 88.2 ndhC-trnV-UAC_p1 ndhC-trnV-UAC 1 CCCGAAATGACAAATGCCAA AGAAGGTCTACGGTTCGAGT 20 20 45.0 50.0 57.3 57.8 0.0 0.0 0.937168 51667 52316 653-782 1.000000 84.5 ndhC-trnV-UAC_p2 ndhC-trnV-UAC 2 TCCCCGAAATGACAAATGCC AGAAGGTCTACGGTTCGAGT 20 20 50.0 50.0 58.8 57.8 0.0 0.0 1.015497 51667 52316 655-784 1.000000 83.9 ndhC-trnV-UAC_p3 ndhC-trnV-UAC 3 CCCGAAATGACAAATGCCAA GAAGGTCTACGGTTCGAGTC 20 20 45.0 55.0 57.3 57.5 0.0 0.0 1.280940 51667 52316 652-781 1.000000 81.8 ndhC-trnV-UAC_p4 ndhC-trnV-UAC 4 CCCCGAAATGACAAATGCCA AGAAGGTCTACGGTTCGAGT 20 20 50.0 50.0 59.1 57.8 0.0 0.0 1.303142 51667 52316 654-783 1.000000 81.6 ndhC-trnV-UAC_p5 ndhC-trnV-UAC 5 TCCCCGAAATGACAAATGCC GAAGGTCTACGGTTCGAGTC 20 20 50.0 55.0 58.8 57.5 0.0 0.0 1.359269 51667 52316 654-783 1.000000 81.1 atpB-rbcL_p1 atpB-rbcL 1 TTTTTCCTCCACGGCGATAG AGAAACGATCTCTCCAACGC 20 20 50.0 50.0 58.0 58.0 16.6 0.0 0.020873 55306 56246 2119-2412 1.000000 91.8 atpB-rbcL_p2 atpB-rbcL 2 TTTTTCCTCCACGGCGATAG GTCCACACAGTTGTCCATGT 20 20 50.0 50.0 58.0 58.0 16.6 0.0 0.051223 55306 56246 1676-1969 1.000000 91.6 atpB-rbcL_p3 atpB-rbcL 3 TTTTTCCTCCACGGCGATAG CTTTAAAAAGCGCTTCGGCA 20 20 50.0 45.0 58.0 58.0 16.6 25.2 0.063430 55306 56246 2146-2439 1.000000 91.5 atpB-rbcL_p4 atpB-rbcL 4 CTATTTTTCCTCCACGGCGA AGAAACGATCTCTCCAACGC 20 20 50.0 50.0 58.0 58.0 16.6 0.0 0.020873 55306 56246 2122-2415 0.568182 74.3 atpB-rbcL_p5 atpB-rbcL 5 CTATTTTTCCTCCACGGCGA GTCCACACAGTTGTCCATGT 20 20 50.0 50.0 58.0 58.0 16.6 0.0 0.051223 55306 56246 1679-1972 0.568182 74.3 rpl14-rpl16_p1 rpl14-rpl16 1 TCAAAAGGGTCTGAGGTTGA GCATGCAAAATGCCTATACGA 20 21 45.0 42.9 56.3 57.4 0.0 14.2 3.338403 82434 82573 202-211 1.000000 65.3 rpl14-rpl16_p2 rpl14-rpl16 2 TCAAAAGGGTCTGAGGTTGA AGCATGCAAAATGCCTATACG 20 21 45.0 42.9 56.3 57.4 0.0 22.0 3.345223 82434 82573 203-212 1.000000 65.2 rpl14-rpl16_p3 rpl14-rpl16 3 TCAAAAGGGTCTGAGGTTGAA GCATGCAAAATGCCTATACGA 21 21 42.9 42.9 57.1 57.4 0.0 14.2 3.567997 82434 82573 202-211 1.000000 63.5 rpl14-rpl16_p4 rpl14-rpl16 4 ACATTCAAAAGGGTCTGAGGT GCATGCAAAATGCCTATACGA 21 21 42.9 42.9 57.1 57.4 0.0 14.2 3.508364 82434 82573 206-215 0.954545 62.1 rpl14-rpl16_p5 rpl14-rpl16 5 ACATTCAAAAGGGTCTGAGGT AGCATGCAAAATGCCTATACG 21 21 42.9 42.9 57.1 57.4 0.0 22.0 3.515183 82434 82573 207-216 0.954545 62.1 ndhF-rpl32_p1 ndhF-rpl32 1 TATCTTCCCTGTCCCAAGCA AAGTTTCGTTCTCAGTCGGG 20 20 50.0 50.0 58.0 57.8 0.0 0.0 0.184983 114901 115850 1928-2836 0.181818 51.6 ndhF-rpl32_p2 ndhF-rpl32 2 TCTTCCCTGTCCCAAGCATA AAGTTTCGTTCTCAGTCGGG 20 20 50.0 50.0 58.0 57.8 0.0 0.0 0.184983 114901 115850 1926-2834 0.181818 51.6 ndhF-rpl32_p3 ndhF-rpl32 3 TATCTTCCCTGTCCCAAGCA TTCGTTCTCAGTCGGGGTAT 20 20 50.0 50.0 58.0 58.2 0.0 0.0 0.191218 114901 115850 1924-2832 0.181818 51.6 ndhF-rpl32_p4 ndhF-rpl32 4 TCTTCCCTGTCCCAAGCATA TTCGTTCTCAGTCGGGGTAT 20 20 50.0 50.0 58.0 58.2 0.0 0.0 0.191218 114901 115850 1922-2830 0.181818 51.6 ndhF-rpl32_p5 ndhF-rpl32 5 TCTTCCCTGTCCCAAGCATA TTTCGTTCTCAGTCGGGGTA 20 20 50.0 50.0 58.0 58.4 0.0 0.0 0.414932 114901 115850 1923-2831 0.181818 49.8 ccsA-ndhD_p1 ccsA-ndhD 1 AGTTATGGTTCATTCCAATTACT TCGGTTGACAAGGTACAAGT 23 20 30.4 45.0 53.7 56.7 0.0 0.0 8.590784 117900 118193 355-377 0.863636 46.5 ccsA-ndhD_p2 ccsA-ndhD 2 TGGTTCATTCCAATTACTATCT TCGGTTGACAAGGTACAAGT 22 20 31.8 45.0 52.6 56.7 0.0 0.0 8.722491 117900 118193 350-372 0.863636 46.5 ccsA-ndhD_p3 ccsA-ndhD 3 AGTTATGGTTCATTCCAATTACT TCGGTTGACAAGGTACAAGTT 23 21 30.4 42.9 53.7 57.5 0.0 0.0 8.853681 117900 118193 355-377 0.863636 46.5 ccsA-ndhD_p4 ccsA-ndhD 4 TGGTTCATTCCAATTACTATCT TCGGTTGACAAGGTACAAGTT 22 21 31.8 42.9 52.6 57.5 0.0 0.0 8.985388 117900 118193 350-372 0.863636 46.5 ccsA-ndhD_p5 ccsA-ndhD 5 ATGGTTCATTCCAATTACTATCT TCGGTTGACAAGGTACAAGT 23 20 30.4 45.0 53.2 56.7 0.0 0.0 9.067301 117900 118193 351-373 0.863636 46.5 ycf1_p1 ycf1 1 AACGAGTTTTTGGTTCCCGA GAGCTACTGAGGAACAACGG 20 20 45.0 55.0 58.0 58.0 0.0 0.0 0.043582 124021 124551 1768-1768 0.022727 40.6 ycf1_p2 ycf1 2 ACGAGTTTTTGGTTCCCGAA GAGCTACTGAGGAACAACGG 20 20 45.0 55.0 58.0 58.0 0.0 0.0 0.043582 124021 124551 1767-1767 0.022727 40.6 ycf1_p3 ycf1 3 AACGAGTTTTTGGTTCCCGA GCTTCCTTCGTAACTCCAGG 20 20 45.0 55.0 58.0 58.0 0.0 0.0 0.052791 124021 124551 1688-1688 0.022727 40.5 ycf1_p4 ycf1 4 ACGAGTTTTTGGTTCCCGAA GCTTCCTTCGTAACTCCAGG 20 20 45.0 55.0 58.0 58.0 0.0 0.0 0.052791 124021 124551 1687-1687 0.022727 40.5 ycf1_p5 ycf1 5 ACGAGTTTTTGGTTCCCGAA AAGCGAGCCCTTTCATTCAA 20 20 45.0 45.0 58.0 58.1 0.0 0.0 0.131551 124021 124551 1878-1878 0.022727 39.9