feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 15 88 -1 74 LSC 0.013514 1 0 3 13 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 89 624 0 536 LSC 0.026119 14 0 46 21 no 1.000000 2 1.000000 NA 1.000000 59.000000 psbA gene psbA psbA 625 1683 -1 1059 LSC 0.008499 9 0 6 39 no 1.000000 2 1.000000 NA 1.000000 49.100000 IGS_002 igs psbA|rbcL psbA-rbcL 1684 2089 0 406 LSC 0.028061 11 14 8 25 no 1.000000 2 1.000000 NA 0.965517 59.700000 rbcL gene rbcL rbcL 2090 3523 -1 1434 LSC 0.016039 23 0 64 43 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_003 igs rbcL|atpB rbcL-atpB 3524 4306 0 783 LSC 0.015564 12 12 24 56 no 1.000000 2 1.000000 NA 0.984674 56.000000 atpB gene atpB atpB 4307 5803 1 1497 LSC 0.008684 13 0 12 142 no 1.000000 2 1.000000 NA 1.000000 49.600000 atpE gene atpE atpE 5800 6201 1 402 LSC 0.009950 4 0 191 161 no 1.000000 2 1.000000 NA 1.000000 57.400000 IGS_005 igs atpE|trnM-CAU atpE-trnM-CAU 6202 6432 0 231 LSC 0.017391 4 1 3 94 no 1.000000 2 1.000000 NA 0.995671 48.100000 trnM-CAU tRNA trnM-CAU trnM-CAU 6433 6505 -1 73 LSC 0.000000 0 0 44 21 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_006 igs trnM-CAU|ndhK trnM-CAU-ndhK 6506 8491 0 1986 LSC 0.036745 70 81 117 4 no 1.000000 2 1.000000 NA 0.959215 67.900000 ndhK gene ndhK ndhK 8492 8854 1 363 LSC 0.041667 2 315 85 300 no 1.000000 2 1.000000 NA 0.132231 53.800000 IGS_007 igs ndhK|ndhJ ndhK-ndhJ 8855 9456 0 602 LSC NA 0 602 300 300 no 1.000000 2 1.000000 NA 0.000000 46.200000 ndhJ gene ndhJ ndhJ 9457 9948 1 492 LSC NA 0 492 300 300 no 1.000000 2 1.000000 NA 0.000000 44.000000 IGS_008 igs ndhJ|trnF-GAA ndhJ-trnF-GAA 9949 10611 0 663 LSC 0.042553 8 475 300 98 no 1.000000 2 1.000000 NA 0.283560 62.800000 trnF-GAA tRNA trnF-GAA trnF-GAA 10612 10684 -1 73 LSC 0.000000 0 0 139 25 no 0.000000 1 0.000000 NA 1.000000 20.600000 IGS_009 igs trnF-GAA|trnL-UAA trnF-GAA-trnL-UAA 10685 11028 0 344 LSC 0.026163 9 0 212 33 no 1.000000 2 1.000000 NA 1.000000 55.900000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 11029 11078 -1 50 LSC 0.020000 1 0 37 22 no 1.000000 2 1.000000 NA 1.000000 50.600000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 11565 11599 -1 35 LSC 0.000000 0 0 71 147 no 0.000000 1 0.000000 NA 1.000000 24.100000 IGS_012 igs trnL-UAA|trnT-UGU trnL-UAA-trnT-UGU 11600 12305 0 706 LSC 0.029872 21 3 106 111 no 1.000000 2 1.000000 NA 0.995751 69.300000 trnT-UGU tRNA trnT-UGU trnT-UGU 12306 12378 1 73 LSC 0.000000 0 0 2 38 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_013 igs trnT-UGU|rps4 trnT-UGU-rps4 12379 12801 0 423 LSC 0.024155 10 9 75 37 no 1.000000 2 1.000000 NA 0.978723 58.700000 rps4 gene rps4 rps4 12802 13407 1 606 LSC 0.019802 12 0 69 21 no 1.000000 2 1.000000 NA 1.000000 56.700000 IGS_014 igs rps4|trnS-GGA rps4-trnS-GGA 13408 13683 0 276 LSC 0.032727 9 1 42 66 no 1.000000 2 1.000000 NA 0.996377 59.800000 trnS-GGA tRNA trnS-GGA trnS-GGA 13684 13770 -1 87 LSC 0.011494 1 0 8 23 no 1.000000 2 1.000000 NA 1.000000 44.700000 IGS_015 igs trnS-GGA|ycf3 trnS-GGA-ycf3 13771 14606 0 836 LSC 0.015644 13 5 20 14 no 1.000000 2 1.000000 NA 0.994019 54.400000 ycf3 gene ycf3 ycf3 14607 16570 1 1964 LSC 0.015784 31 0 18 7 no 1.000000 2 1.000000 NA 1.000000 52.400000 IGS_016 igs ycf3|psaA ycf3-psaA 16571 17247 0 677 LSC 0.072617 48 16 21 180 yes 1.000000 2 1.000000 NA 0.976366 79.000000 psaA gene psaA psaA 17248 19500 1 2253 LSC 0.006214 14 0 90 219 no 1.000000 2 1.000000 NA 1.000000 52.500000 IGS_017 igs psaA|psaB psaA-psaB 19501 19525 0 25 LSC 0.000000 0 0 267 194 no 0.000000 1 0.000000 NA 1.000000 33.300000 psaB gene psaB psaB 19526 21730 1 2205 LSC 0.005896 13 0 292 32 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_018 igs psaB|rps14 psaB-rps14 21731 21851 0 121 LSC 0.025641 3 4 108 23 no 1.000000 2 1.000000 NA 0.966942 57.100000 rps14 gene rps14 rps14 21852 22154 1 303 LSC 0.013201 4 0 59 156 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_019 igs rps14|trnM-CAU rps14-trnM-CAU 22155 22326 0 172 LSC 0.006494 1 18 51 16 no 1.000000 2 1.000000 NA 0.895349 45.700000 trnM-CAU tRNA trnM-CAU trnM-CAU 22327 22400 1 74 LSC 0.013514 1 0 15 6 no 1.000000 2 1.000000 NA 1.000000 45.700000 IGS_020 igs trnM-CAU|trnG-GCC trnM-CAU-trnG-GCC 22401 22607 0 207 LSC 0.039604 8 5 57 66 no 1.000000 2 1.000000 NA 0.975845 66.800000 trnG-GCC tRNA trnG-GCC trnG-GCC 22608 22678 -1 71 LSC 0.014085 1 0 125 17 no 1.000000 2 1.000000 NA 1.000000 46.900000 IGS_021 igs trnG-GCC|psbZ trnG-GCC-psbZ 22679 22879 0 201 LSC 0.014925 3 0 4 81 no 1.000000 2 1.000000 NA 1.000000 46.400000 psbZ gene psbZ psbZ 22880 23068 -1 189 LSC 0.010582 2 0 163 14 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_022 igs psbZ|trnS-UGA psbZ-trnS-UGA 23069 23413 0 345 LSC 0.049275 17 0 53 60 no 1.000000 2 1.000000 NA 1.000000 70.700000 trnS-UGA tRNA trnS-UGA trnS-UGA 23414 23506 1 93 LSC 0.010753 1 0 117 18 no 1.000000 2 1.000000 NA 1.000000 45.000000 IGS_023 igs trnS-UGA|psbC trnS-UGA-psbC 23507 23742 0 236 LSC 0.016949 4 0 32 66 no 1.000000 2 1.000000 NA 1.000000 49.600000 psbC gene psbC psbC 23743 25164 -1 1422 LSC 0.011252 16 0 82 139 no 1.000000 2 1.000000 NA 1.000000 56.400000 psbD gene psbD psbD 25112 26173 -1 1062 LSC 0.010358 11 0 94 94 no 1.000000 2 1.000000 NA 1.000000 56.800000 IGS_025 igs psbD|trnT-GGU psbD-trnT-GGU 26174 27480 0 1307 LSC 0.014063 18 27 25 6 no 1.000000 2 1.000000 NA 0.979342 54.300000 trnT-GGU tRNA trnT-GGU trnT-GGU 27481 27552 -1 72 LSC 0.027778 2 0 104 18 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_026 igs trnT-GGU|trnE-UUC trnT-GGU-trnE-UUC 27553 28217 0 665 LSC 0.039634 26 9 60 121 no 1.000000 2 1.000000 NA 0.986466 72.300000 trnE-UUC tRNA trnE-UUC trnE-UUC 28218 28290 1 73 LSC 0.000000 0 0 1 48 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_027 igs trnE-UUC|trnY-GUA trnE-UUC-trnY-GUA 28291 28349 0 59 LSC 0.016949 1 0 74 136 no 1.000000 2 1.000000 NA 1.000000 52.800000 trnY-GUA tRNA trnY-GUA trnY-GUA 28350 28433 1 84 LSC 0.000000 0 0 10 52 no 0.000000 1 0.000000 NA 1.000000 19.500000 IGS_028 igs trnY-GUA|trnD-GUC trnY-GUA-trnD-GUC 28434 28541 0 108 LSC 0.018519 2 0 94 76 no 1.000000 2 1.000000 NA 1.000000 53.800000 trnD-GUC tRNA trnD-GUC trnD-GUC 28542 28615 1 74 LSC 0.000000 0 0 0 2 no 0.000000 1 0.000000 NA 1.000000 18.800000 IGS_029 igs trnD-GUC|psbM trnD-GUC-psbM 28616 29129 0 514 LSC 0.013780 7 6 74 8 no 1.000000 2 1.000000 NA 0.988327 51.600000 psbM gene psbM psbM 29130 29234 1 105 LSC 0.009524 1 0 92 10 no 1.000000 2 1.000000 NA 1.000000 43.700000 IGS_030 igs psbM|petN psbM-petN 29235 30267 0 1033 LSC 0.031093 31 36 96 247 no 1.000000 2 1.000000 NA 0.965150 72.100000 petN gene petN petN 30268 30357 -1 90 LSC 0.000000 0 0 73 157 no 0.000000 1 0.000000 NA 1.000000 24.200000 IGS_031 igs petN|trnC-GCA petN-trnC-GCA 30358 31228 0 871 LSC 0.024561 21 16 163 100 no 1.000000 2 1.000000 NA 0.981630 67.100000 trnC-GCA tRNA trnC-GCA trnC-GCA 31229 31300 -1 72 LSC 0.000000 0 0 100 28 no 0.000000 1 0.000000 NA 1.000000 20.900000 IGS_032 igs trnC-GCA|rpoB trnC-GCA-rpoB 31301 32461 0 1161 LSC 0.019845 23 2 172 185 no 1.000000 2 1.000000 NA 0.998277 68.200000 rpoB gene rpoB rpoB 32462 35656 1 3195 LSC 0.008138 26 0 16 47 no 1.000000 2 1.000000 NA 1.000000 46.200000 IGS_033 igs rpoB|rpoC1 rpoB-rpoC1 35657 36458 0 802 LSC 0.019950 16 0 273 62 no 1.000000 2 1.000000 NA 1.000000 59.900000 rpoC1 gene rpoC1 rpoC1 36459 37754 1 1296 LSC 0.008488 11 0 64 83 no 1.000000 2 1.000000 NA 1.000000 53.400000 IGS_034 igs rpoC1|rpoC2 rpoC1-rpoC2 37755 39841 0 2087 LSC 0.014378 29 70 209 11 no 1.000000 2 1.000000 NA 0.966459 54.800000 rpoC2 gene rpoC2 rpoC2 39842 42103 1 2262 LSC 0.014147 32 0 50 61 no 1.000000 2 1.000000 NA 1.000000 54.000000 IGS_035 igs rpoC2|rps2 rpoC2-rps2 42104 42321 0 218 LSC 0.009302 2 3 29 29 no 1.000000 2 1.000000 NA 0.986239 46.300000 rps2 gene rps2 rps2 42322 43032 1 711 LSC 0.018284 13 0 123 134 no 1.000000 2 1.000000 NA 1.000000 63.500000 IGS_036 igs rps2|atpI rps2-atpI 43033 43256 0 224 LSC 0.040541 9 2 117 4 no 1.000000 2 1.000000 NA 0.991071 61.900000 atpI gene atpI atpI 43257 44000 1 744 LSC 0.013532 10 5 70 85 no 1.000000 2 1.000000 NA 0.993280 57.400000 IGS_037 igs atpI|atpH atpI-atpH 44001 45073 0 1073 LSC 0.021113 22 31 63 116 no 1.000000 2 1.000000 NA 0.971109 63.300000 atpH gene atpH atpH 45074 45319 1 246 LSC 0.004065 1 0 53 32 no 1.000000 2 1.000000 NA 1.000000 42.200000 IGS_038 igs atpH|atpF atpH-atpF 45320 45681 0 362 LSC 0.027701 10 1 129 8 no 1.000000 2 1.000000 NA 0.997238 55.600000 atpF gene atpF atpF 45682 46959 1 1278 LSC 0.018196 23 14 128 5 no 1.000000 2 1.000000 NA 0.989045 55.600000 IGS_039 igs atpF|atpA atpF-atpA 46960 47077 0 118 LSC 0.012500 1 38 45 92 no 1.000000 2 1.000000 NA 0.677966 44.800000 atpA gene atpA atpA 47078 48601 1 1524 LSC 0.011155 17 0 112 35 no 1.000000 2 1.000000 NA 1.000000 52.700000 IGS_040 igs atpA|trnR-UCU atpA-trnR-UCU 48602 48707 0 106 LSC 0.037736 4 0 11 75 no 1.000000 2 1.000000 NA 1.000000 60.000000 trnR-UCU tRNA trnR-UCU trnR-UCU 48708 48779 -1 72 LSC 0.000000 0 0 4 3 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_041 igs trnR-UCU|trnS-CGA trnR-UCU-trnS-CGA 48780 48979 0 200 LSC 0.020000 4 0 76 149 no 1.000000 2 1.000000 NA 1.000000 54.700000 trnS-CGA_part2 tRNA trnS-CGA trnS-CGA 48980 49038 -1 59 LSC 0.000000 0 0 39 90 no 0.000000 1 0.000000 NA 1.000000 21.700000 trnS-CGA_part1 tRNA trnS-CGA trnS-CGA 49703 49733 -1 31 LSC 0.000000 0 0 145 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_044 igs trnS-CGA|trnS-GCU trnS-CGA-trnS-GCU 49734 50409 0 676 LSC 0.028190 19 2 176 108 no 1.000000 2 1.000000 NA 0.997041 68.300000 trnS-GCU tRNA trnS-GCU trnS-GCU 50410 50497 1 88 LSC 0.000000 0 0 76 20 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_045 igs trnS-GCU|psbI trnS-GCU-psbI 50498 50562 0 65 LSC 0.015385 1 0 164 300 no 1.000000 2 1.000000 NA 1.000000 58.600000 psbI gene psbI psbI 50563 50673 -1 111 LSC 0.000000 0 0 44 201 no 0.000000 1 0.000000 NA 1.000000 22.100000 IGS_046 igs psbI|psbK psbI-psbK 50674 51081 0 408 LSC 0.020101 8 10 155 108 no 1.000000 2 1.000000 NA 0.975490 61.700000 psbK gene psbK psbK 51082 51267 -1 186 LSC 0.010753 2 0 3 67 no 1.000000 2 1.000000 NA 1.000000 43.900000 IGS_047 igs psbK|trnK-UUU psbK-trnK-UUU 51268 51616 0 349 LSC 0.020468 7 7 12 45 no 1.000000 2 1.000000 NA 0.979943 53.100000 IGS_048 igs trnK-UUU|trnQ-UUG trnK-UUU-trnQ-UUG 51690 51801 0 112 LSC 0.027778 3 4 27 25 no 1.000000 2 1.000000 NA 0.964286 58.700000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 51802 51873 1 72 LSC 0.027778 2 0 16 3 no 1.000000 2 1.000000 NA 1.000000 53.700000 IGS_049 igs trnQ-UUG|rps16 trnQ-UUG-rps16 51874 53092 0 1219 LSC 0.025372 29 76 8 56 no 1.000000 2 1.000000 NA 0.937654 63.200000 rps16 gene rps16 rps16 53093 54252 1 1160 LSC 0.027875 32 12 11 19 no 1.000000 2 1.000000 NA 0.989655 61.600000 IGS_050 igs rps16|trnK-UUU rps16-trnK-UUU 54253 55332 0 1080 LSC 0.047481 49 48 33 182 yes 1.000000 2 1.000000 NA 0.955556 77.600000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 55333 55369 1 37 LSC 0.000000 0 0 60 145 no 0.000000 1 0.000000 NA 1.000000 23.200000 matK gene matK matK 56080 57621 1 1542 LSC 0.016861 26 0 51 12 no 1.000000 2 1.000000 NA 1.000000 54.300000 IGS_053 igs matK|trnK-UUU matK-trnK-UUU 57622 57844 0 223 LSC 0.026906 6 0 137 42 no 1.000000 2 1.000000 NA 1.000000 56.100000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 57845 57880 1 36 LSC 0.000000 0 0 10 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_054 igs trnK-UUU|accD trnK-UUU-accD 57881 59569 0 1689 LSC 0.196462 311 106 46 63 yes 1.000000 2 1.000000 NA 0.937241 86.300000 accD gene accD accD 59570 61966 1 2397 LSC 0.041463 85 347 12 13 yes 1.000000 2 1.000000 NA 0.855236 68.100000 IGS_055 igs accD|psaI accD-psaI 61967 62254 0 288 LSC 0.038314 10 27 15 24 no 1.000000 2 1.000000 NA 0.906250 63.800000 psaI gene psaI psaI 62255 62365 1 111 LSC 0.009009 1 0 51 47 no 1.000000 2 1.000000 NA 1.000000 46.200000 IGS_056 igs psaI|ycf4 psaI-ycf4 62366 62816 0 451 LSC 0.021176 9 26 86 67 no 1.000000 2 1.000000 NA 0.942350 62.300000 ycf4 gene ycf4 ycf4 62817 63371 1 555 LSC 0.012613 7 0 4 43 no 1.000000 2 1.000000 NA 1.000000 50.400000 IGS_057 igs ycf4|cemA ycf4-cemA 63372 64249 0 878 LSC 0.030892 27 4 6 48 no 1.000000 2 1.000000 NA 0.995444 62.400000 cemA gene cemA cemA 64250 64939 1 690 LSC 0.013043 9 0 48 29 no 1.000000 2 1.000000 NA 1.000000 53.400000 IGS_058 igs cemA|petA cemA-petA 64940 65146 0 207 LSC 0.024155 5 0 160 100 no 1.000000 2 1.000000 NA 1.000000 58.900000 petA gene petA petA 65147 66109 1 963 LSC 0.012461 12 0 0 3 no 1.000000 2 1.000000 NA 1.000000 50.900000 IGS_059 igs petA|psbJ petA-psbJ 66110 67176 0 1067 LSC 0.033333 35 17 225 21 no 1.000000 2 1.000000 NA 0.984067 66.000000 psbJ gene psbJ psbJ 67177 67299 -1 123 LSC 0.016260 2 0 16 118 no 1.000000 2 1.000000 NA 1.000000 48.000000 IGS_060 igs psbJ|psbL psbJ-psbL 67300 67433 0 134 LSC 0.007463 1 0 20 149 no 1.000000 2 1.000000 NA 1.000000 43.300000 psbL gene psbL psbL 67434 67550 -1 117 LSC 0.000000 0 0 15 32 no 0.000000 1 0.000000 NA 1.000000 19.900000 IGS_061 igs psbL|psbF psbL-psbF 67551 67573 0 23 LSC 0.000000 0 0 132 9 no 0.000000 1 0.000000 NA 1.000000 19.400000 psbF gene psbF psbF 67574 67693 -1 120 LSC 0.008333 1 0 155 152 no 1.000000 2 1.000000 NA 1.000000 53.700000 IGS_062 igs psbF|psbE psbF-psbE 67694 67707 0 14 LSC 0.000000 0 0 110 138 no 0.000000 1 0.000000 NA 1.000000 27.000000 psbE gene psbE psbE 67708 67959 -1 252 LSC 0.007937 2 0 124 96 no 1.000000 2 1.000000 NA 1.000000 49.300000 IGS_063 igs psbE|petL psbE-petL 67960 68896 0 937 LSC 0.020408 19 6 110 102 no 1.000000 2 1.000000 NA 0.993597 63.700000 petL gene petL petL 68897 68992 1 96 LSC 0.000000 0 0 3 6 no 0.000000 1 0.000000 NA 1.000000 19.000000 IGS_064 igs petL|petG petL-petG 68993 69170 0 178 LSC 0.033708 6 0 99 195 no 1.000000 2 1.000000 NA 1.000000 64.300000 petG gene petG petG 69171 69284 1 114 LSC 0.000000 0 0 30 81 no 0.000000 1 0.000000 NA 1.000000 21.000000 IGS_065 igs petG|trnW-CCA petG-trnW-CCA 69285 69407 0 123 LSC 0.008130 1 0 144 46 no 1.000000 2 1.000000 NA 1.000000 45.600000 trnW-CCA tRNA trnW-CCA trnW-CCA 69408 69481 -1 74 LSC 0.013514 1 0 41 29 no 1.000000 2 1.000000 NA 1.000000 47.400000 IGS_066 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 69482 69649 0 168 LSC 0.046980 7 19 27 127 no 1.000000 2 1.000000 NA 0.886905 68.900000 trnP-UGG tRNA trnP-UGG trnP-UGG 69650 69723 -1 74 LSC 0.000000 0 0 26 53 no 0.000000 1 0.000000 NA 1.000000 20.700000 IGS_067 igs trnP-UGG|psaJ trnP-UGG-psaJ 69724 70141 0 418 LSC 0.022556 9 19 100 128 no 1.000000 2 1.000000 NA 0.954545 64.700000 psaJ gene psaJ psaJ 70142 70267 1 126 LSC 0.000000 0 0 85 2 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_068 igs psaJ|rpl33 psaJ-rpl33 70268 70756 0 489 LSC 0.064103 30 21 211 10 yes 1.000000 2 1.000000 NA 0.957055 76.500000 rpl33 gene rpl33 rpl33 70757 70957 1 201 LSC 0.004975 1 0 44 0 no 1.000000 2 1.000000 NA 1.000000 40.400000 IGS_069 igs rpl33|rps18 rpl33-rps18 70958 71116 0 159 LSC 0.018868 3 0 190 67 no 1.000000 2 1.000000 NA 1.000000 53.400000 rps18 gene rps18 rps18 71117 71560 1 444 LSC 0.046341 19 34 28 32 yes 1.000000 2 1.000000 NA 0.923423 72.900000 IGS_070 igs rps18|rpl20 rps18-rpl20 71561 71749 0 189 LSC 0.026455 5 0 0 60 no 1.000000 2 1.000000 NA 1.000000 52.700000 rpl20 gene rpl20 rpl20 71750 72217 -1 468 LSC 0.047009 22 0 25 69 no 1.000000 2 1.000000 NA 1.000000 69.900000 IGS_071 igs rpl20|rps12 rpl20-rps12 72218 73015 0 798 LSC 0.013836 11 3 15 51 no 1.000000 2 1.000000 NA 0.996241 53.200000 rps12_part1 gene rps12 rps12 73016 73129 -1 114 LSC 0.008772 1 0 29 28 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_072 igs rps12|clpP rps12-clpP 73130 75031 0 1902 LSC 0.022329 42 21 62 18 no 1.000000 2 1.000000 NA 0.988959 58.100000 clpP gene clpP clpP 75032 75103 -1 72 LSC 0.013889 1 0 36 8 no 1.000000 2 1.000000 NA 1.000000 46.100000 IGS_073 igs clpP|psbB clpP-psbB 75104 75543 0 440 LSC 0.043379 19 2 53 300 no 1.000000 2 1.000000 NA 0.995455 69.800000 psbB gene psbB psbB 75544 77070 1 1527 LSC 0.009823 15 0 17 22 no 1.000000 2 1.000000 NA 1.000000 50.600000 IGS_074 igs psbB|psbT psbB-psbT 77071 77267 0 197 LSC 0.040609 8 0 156 161 yes 1.000000 2 1.000000 NA 1.000000 72.600000 psbT gene psbT psbT 77268 77375 1 108 LSC 0.000000 0 0 59 53 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_075 igs psbT|trnD-GUC psbT-trnD-GUC 77376 77434 0 59 LSC 0.018519 1 5 167 16 no 1.000000 2 1.000000 NA 0.915254 53.000000 trnD-GUC tRNA trnD-GUC trnD-GUC 77435 77508 -1 74 LSC 0.013514 1 0 5 2 no 1.000000 2 1.000000 NA 1.000000 45.400000 IGS_076 igs trnD-GUC|psbN trnD-GUC-psbN 77509 77601 0 93 LSC 0.010753 1 0 57 9 no 1.000000 2 1.000000 NA 1.000000 44.400000 psbN gene psbN psbN 77602 77733 -1 132 LSC 0.007576 1 0 90 23 no 1.000000 2 1.000000 NA 1.000000 43.600000 IGS_077 igs psbN|psbH psbN-psbH 77734 77838 0 105 LSC 0.038095 4 0 122 51 no 1.000000 2 1.000000 NA 1.000000 63.200000 psbH gene psbH psbH 77839 78060 1 222 LSC 0.009009 2 0 16 23 no 1.000000 2 1.000000 NA 1.000000 43.900000 IGS_078 igs psbH|petB psbH-petB 78061 78184 0 124 LSC 0.024194 3 0 160 66 no 1.000000 2 1.000000 NA 1.000000 56.400000 petB gene petB petB 78185 79558 1 1374 LSC 0.016875 23 11 86 27 no 1.000000 2 1.000000 NA 0.991994 56.200000 IGS_079 igs petB|petD petB-petD 79559 80457 0 899 LSC 0.028953 26 1 87 31 no 1.000000 2 1.000000 NA 0.998888 62.800000 petD gene petD petD 80458 80982 1 525 LSC 0.009524 5 0 117 12 no 1.000000 2 1.000000 NA 1.000000 48.600000 IGS_080 igs petD|rpoA petD-rpoA 80983 81163 0 181 LSC 0.066298 12 0 96 50 no 1.000000 2 1.000000 NA 1.000000 72.000000 rpoA gene rpoA rpoA 81164 82165 -1 1002 LSC 0.016966 17 0 8 55 no 1.000000 2 1.000000 NA 1.000000 54.100000 IGS_081 igs rpoA|rps11 rpoA-rps11 82166 82236 0 71 LSC 0.014085 1 0 26 3 no 1.000000 2 1.000000 NA 1.000000 45.800000 rps11 gene rps11 rps11 82237 82653 -1 417 LSC 0.026379 11 0 15 151 no 1.000000 2 1.000000 NA 1.000000 56.200000 IGS_082 igs rps11|rpl36 rps11-rpl36 82654 82759 0 106 LSC 0.000000 0 5 65 45 no 1.000000 2 1.000000 NA 0.952830 45.400000 rpl36 gene rpl36 rpl36 82760 82873 -1 114 LSC 0.017544 2 0 171 4 no 1.000000 2 1.000000 NA 1.000000 47.900000 IGS_083 igs rpl36|infA rpl36-infA 82874 82965 0 92 LSC 0.043478 4 0 20 57 no 1.000000 2 1.000000 NA 1.000000 64.000000 infA gene infA infA 82966 83208 -1 243 LSC 0.020576 5 0 21 3 no 1.000000 2 1.000000 NA 1.000000 49.600000 IGS_084 igs infA|rps8 infA-rps8 83209 83332 0 124 LSC 0.041322 5 3 8 111 no 1.000000 2 1.000000 NA 0.975806 64.100000 rps8 gene rps8 rps8 83333 83737 -1 405 LSC 0.019753 8 0 52 20 no 1.000000 2 1.000000 NA 1.000000 52.500000 IGS_085 igs rps8|rpl14 rps8-rpl14 83738 83913 0 176 LSC 0.046243 8 3 24 17 no 1.000000 2 1.000000 NA 0.982955 66.900000 rpl14 gene rpl14 rpl14 83914 84282 -1 369 LSC 0.010840 4 0 14 10 no 1.000000 2 1.000000 NA 1.000000 45.900000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 84283 84407 0 125 LSC 0.008000 1 0 152 4 no 1.000000 2 1.000000 NA 1.000000 42.400000 rpl16 gene rpl16 rpl16 84408 84812 -1 405 LSC 0.022222 9 0 114 81 no 1.000000 2 1.000000 NA 1.000000 58.500000 IGS_087 igs rpl16|rps3 rpl16-rps3 84813 85900 0 1088 LSC 0.027804 30 9 63 84 no 1.000000 2 1.000000 NA 0.991728 65.200000 rps3 gene rps3 rps3 85901 86599 -1 699 LSC 0.025751 18 0 26 151 no 1.000000 2 1.000000 NA 1.000000 60.500000 IGS_088 igs rps3|rpl22 rps3-rpl22 86600 86606 0 7 LSC 0.000000 0 0 20 144 no 0.000000 1 0.000000 NA 1.000000 20.200000 rpl22 gene rpl22 rpl22 86607 87053 -1 447 LSC 0.028205 11 57 27 152 no 1.000000 2 1.000000 NA 0.872483 61.000000 IGS_089 igs rpl22|rpl2 rpl22-rpl2 87054 87435 0 382 LSC 0.010471 4 0 7 45 no 1.000000 2 1.000000 NA 1.000000 45.800000 rpl2 gene rpl2 rpl2 87436 88925 -1 1490 IRb 0.004027 6 0 4 218 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_090 igs rpl2|rpl23 rpl2-rpl23 88926 88943 0 18 IRb 0.000000 0 0 300 200 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 88944 89225 -1 282 IRb 0.003546 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 54.500000 IGS_091 igs rpl23|trnM-CAU rpl23-trnM-CAU 89226 89589 0 364 IRb 0.000000 0 65 81 144 no 1.000000 2 1.000000 NA 0.821429 46.100000 trnM-CAU tRNA trnM-CAU trnM-CAU 89590 89663 -1 74 IRb 0.000000 0 0 300 70 no 0.000000 1 0.000000 NA 1.000000 24.000000 IGS_092 igs trnM-CAU|ycf2 trnM-CAU-ycf2 89664 91970 0 2307 IRb 0.024030 52 143 300 250 yes 1.000000 2 1.000000 NA 0.938015 75.200000 ycf2 gene ycf2 ycf2 91971 96497 1 4527 IRb 0.010731 48 54 26 39 no 1.000000 2 1.000000 NA 0.988072 47.500000 IGS_093 igs ycf2|trnL-CAA ycf2-trnL-CAA 96498 96743 0 246 IRb 0.008130 2 0 93 167 no 1.000000 2 1.000000 NA 1.000000 49.100000 trnL-CAA tRNA trnL-CAA trnL-CAA 96744 96824 -1 81 IRb 0.000000 0 0 196 86 no 0.000000 1 0.000000 NA 1.000000 25.200000 IGS_094 igs trnL-CAA|ndhB trnL-CAA-ndhB 96825 97373 0 549 IRb 0.005464 3 0 277 52 no 1.000000 2 1.000000 NA 1.000000 49.700000 ndhB gene ndhB ndhB 97374 99572 -1 2199 IRb 0.003653 8 9 116 127 no 1.000000 2 1.000000 NA 0.995907 53.500000 IGS_095 igs ndhB|rps7 ndhB-rps7 99573 99846 0 274 IRb 0.010949 3 0 300 231 no 1.000000 2 1.000000 NA 1.000000 58.800000 rps7 gene rps7 rps7 99847 100314 -1 468 IRb 0.008547 4 0 19 247 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_096 igs rps7|rps12 rps7-rps12 100315 100363 0 49 IRb 0.000000 0 0 120 198 no 0.000000 1 0.000000 NA 1.000000 27.700000 rps12_part2 gene rps12 rps12 100364 101166 -1 803 IRb 0.003736 3 0 169 112 no 1.000000 2 1.000000 NA 1.000000 54.300000 IGS_097 igs rps12|trnV-GAC rps12-trnV-GAC 101167 102767 0 1601 IRb 0.007605 12 23 1 300 no 1.000000 2 1.000000 NA 0.985634 49.400000 trnV-GAC tRNA trnV-GAC trnV-GAC 102768 102839 1 72 IRb 0.000000 0 0 163 300 no 0.000000 1 0.000000 NA 1.000000 31.000000 IGS_098 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 102840 103068 0 229 IRb 0.000000 0 8 235 300 no 1.000000 2 1.000000 NA 0.965066 55.900000 rrn16S rRNA rrn16S rrn16S 103069 104560 1 1492 IRb 0.000670 1 0 300 195 no 1.000000 2 1.000000 NA 1.000000 58.800000 IGS_099 igs rrn16S|trnI rrn16S-trnI 104561 104971 0 411 IRb 0.017500 7 11 300 194 no 1.000000 2 1.000000 NA 0.973236 67.000000 trnI_part1 tRNA trnI trnI 104972 105003 1 32 IRb 0.000000 0 0 23 162 no 0.000000 1 0.000000 NA 1.000000 20.500000 trnI_part2 tRNA trnI trnI 105946 105985 1 40 IRb 0.000000 0 0 244 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_102 igs trnI|trnA-UGC trnI-trnA-UGC 105986 106049 0 64 IRb 0.000000 0 0 284 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 106050 106086 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 106899 106934 1 36 IRb 0.000000 0 0 206 121 no 0.000000 1 0.000000 NA 1.000000 27.800000 IGS_105 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 106935 107113 0 179 IRb 0.005587 1 0 242 300 no 1.000000 2 1.000000 NA 1.000000 55.700000 rrn23S rRNA rrn23S rrn23S 107114 109939 1 2826 IRb 0.001415 4 0 57 19 no 1.000000 2 1.000000 NA 1.000000 43.200000 IGS_106 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 109940 110010 0 71 IRb 0.014085 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 60.600000 rrn4.5S rRNA rrn4.5S rrn4.5S 110011 110275 -1 265 IRb 0.000000 0 0 51 79 no 0.000000 1 0.000000 NA 1.000000 22.600000 IGS_107 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 110276 110319 0 44 IRb 0.000000 0 0 300 35 no 0.000000 1 0.000000 NA 1.000000 21.400000 rrn5S rRNA rrn5S rrn5S 110320 110489 1 170 IRb 0.011765 2 0 300 12 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_108 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 110490 110728 0 239 SSC 0.137778 31 14 8 80 yes 1.000000 2 1.000000 NA 0.941423 77.700000 trnR-ACG tRNA trnR-ACG trnR-ACG 110729 110802 1 74 SSC 0.000000 0 0 8 6 no 0.000000 1 0.000000 NA 1.000000 19.200000 IGS_109 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 110803 111365 0 563 SSC 0.071556 40 4 82 76 yes 1.000000 2 1.000000 NA 0.992895 80.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 111366 111437 -1 72 SSC 0.000000 0 0 21 4 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_110 igs trnN-GUU|ndhF trnN-GUU-ndhF 111438 113551 0 2114 SSC 0.057241 117 70 93 34 yes 1.000000 2 1.000000 NA 0.966887 77.600000 ndhF gene ndhF ndhF 113552 113794 -1 243 SSC 0.047826 11 13 10 64 no 1.000000 2 1.000000 NA 0.946502 70.200000 IGS_111 igs ndhF|rpl32 ndhF-rpl32 113795 114251 0 457 SSC 0.038902 17 20 37 65 no 1.000000 2 1.000000 NA 0.956236 69.900000 rpl32 gene rpl32 rpl32 114252 114470 1 219 SSC 0.032110 7 1 95 0 no 1.000000 2 1.000000 NA 0.995434 56.400000 IGS_112 igs rpl32|trnL-UAG rpl32-trnL-UAG 114471 115216 0 746 SSC 0.061538 44 31 0 16 yes 1.000000 2 1.000000 NA 0.958445 77.600000 trnL-UAG tRNA trnL-UAG trnL-UAG 115217 115296 1 80 SSC 0.012500 1 0 8 15 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_113 igs trnL-UAG|ccsA trnL-UAG-ccsA 115297 115431 0 135 SSC 0.031496 4 8 63 105 no 1.000000 2 1.000000 NA 0.940741 64.700000 ccsA gene ccsA ccsA 115432 116400 1 969 SSC 0.015480 15 0 23 51 no 1.000000 2 1.000000 NA 1.000000 54.400000 IGS_114 igs ccsA|ndhD ccsA-ndhD 116401 117315 0 915 SSC 0.030588 26 65 90 3 no 1.000000 2 1.000000 NA 0.928962 65.500000 ndhD gene ndhD ndhD 117316 118173 -1 858 SSC 0.052693 45 4 17 15 yes 1.000000 2 1.000000 NA 0.995338 74.400000 IGS_115 igs ndhD|psaC ndhD-psaC 118174 118303 0 130 SSC 0.070866 9 3 23 18 no 1.000000 2 1.000000 NA 0.976923 72.200000 psaC gene psaC psaC 118304 118549 -1 246 SSC 0.004065 1 0 7 21 no 1.000000 2 1.000000 NA 1.000000 40.400000 IGS_116 igs psaC|ndhH psaC-ndhH 118550 120230 0 1681 SSC 0.044365 74 13 227 13 no 1.000000 2 1.000000 NA 0.992267 70.600000 ndhH gene ndhH ndhH 120231 120416 -1 186 SSC 0.032258 6 0 28 33 no 1.000000 2 1.000000 NA 1.000000 58.100000 IGS_117 igs ndhH|rps15 ndhH-rps15 120417 120478 0 62 SSC 0.016129 1 0 56 84 no 1.000000 2 1.000000 NA 1.000000 51.000000 rps15 gene rps15 rps15 120479 120748 -1 270 SSC 0.022472 6 3 28 8 no 1.000000 2 1.000000 NA 0.988889 52.100000 IGS_118 igs rps15|ycf1 rps15-ycf1 120749 121168 0 420 SSC 0.030380 12 25 3 15 no 1.000000 2 1.000000 NA 0.940476 62.000000 ycf1 gene ycf1 ycf1 121169 124831 -1 3663 SSC 0.045579 166 21 58 16 no 1.000000 2 1.000000 NA 0.994267 67.500000 IGS_119 igs ycf1|rrn5S ycf1-rrn5S 124832 128432 0 3601 SSC 0.062942 169 916 8 8 yes 1.000000 2 1.000000 NA 0.745626 67.700000 rrn5S rRNA rrn5S rrn5S 128433 128602 -1 170 IRa 0.011765 2 0 12 300 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_120 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 128603 128646 0 44 IRa 0.000000 0 0 35 300 no 0.000000 1 0.000000 NA 1.000000 21.400000 rrn4.5S rRNA rrn4.5S rrn4.5S 128647 128911 1 265 IRa 0.000000 0 0 79 51 no 0.000000 1 0.000000 NA 1.000000 22.600000 IGS_121 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 128912 128982 0 71 IRa 0.014085 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 60.600000 rrn23S rRNA rrn23S rrn23S 128983 131808 -1 2826 IRa 0.001415 4 0 19 57 no 1.000000 2 1.000000 NA 1.000000 43.200000 IGS_122 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 131809 131987 0 179 IRa 0.005587 1 0 300 242 no 1.000000 2 1.000000 NA 1.000000 55.700000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 131988 132023 -1 36 IRa 0.000000 0 0 121 206 no 0.000000 1 0.000000 NA 1.000000 27.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 132836 132872 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_125 igs trnA-UGC|trnI trnA-UGC-trnI 132873 132936 0 64 IRa 0.000000 0 0 300 284 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part2 tRNA trnI trnI 132937 132976 -1 40 IRa 0.000000 0 0 300 244 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI_part1 tRNA trnI trnI 133919 133950 -1 32 IRa 0.000000 0 0 162 23 no 0.000000 1 0.000000 NA 1.000000 20.500000 IGS_128 igs trnI|rrn16S trnI-rrn16S 133951 134361 0 411 IRa 0.017500 7 11 194 300 no 1.000000 2 1.000000 NA 0.973236 67.000000 rrn16S rRNA rrn16S rrn16S 134362 135853 -1 1492 IRa 0.000670 1 0 195 300 no 1.000000 2 1.000000 NA 1.000000 58.800000 IGS_129 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 135854 136082 0 229 IRa 0.000000 0 8 300 235 no 1.000000 2 1.000000 NA 0.965066 55.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 136083 136154 -1 72 IRa 0.000000 0 0 300 163 no 0.000000 1 0.000000 NA 1.000000 31.000000 IGS_130 igs trnV-GAC|rps12 trnV-GAC-rps12 136155 137755 0 1601 IRa 0.007605 12 23 300 1 no 1.000000 2 1.000000 NA 0.985634 49.400000 rps12_part2 gene rps12 rps12 137756 137987 1 232 IRa 0.008621 2 0 112 300 no 1.000000 2 1.000000 NA 1.000000 50.900000 IGS_131 igs rps12|rps12 rps12-rps12 137988 138523 0 536 IRa 0.001866 1 0 226 204 no 1.000000 2 1.000000 NA 1.000000 58.500000 rps12_part3 gene rps12 rps12 138524 138558 1 35 IRa 0.000000 0 0 163 169 no 0.000000 1 0.000000 NA 1.000000 31.000000 IGS_132 igs rps12|rps7 rps12-rps7 138559 138607 0 49 IRa 0.000000 0 0 198 120 no 0.000000 1 0.000000 NA 1.000000 27.700000 rps7 gene rps7 rps7 138608 139075 1 468 IRa 0.008547 4 0 247 19 no 1.000000 2 1.000000 NA 1.000000 47.300000 IGS_133 igs rps7|ndhB rps7-ndhB 139076 139349 0 274 IRa 0.010949 3 0 231 300 no 1.000000 2 1.000000 NA 1.000000 58.800000 ndhB gene ndhB ndhB 139350 141548 1 2199 IRa 0.003653 8 9 127 116 no 1.000000 2 1.000000 NA 0.995907 53.500000 IGS_134 igs ndhB|trnL-CAA ndhB-trnL-CAA 141549 142097 0 549 IRa 0.005464 3 0 52 277 no 1.000000 2 1.000000 NA 1.000000 49.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 142098 142178 1 81 IRa 0.000000 0 0 86 196 no 0.000000 1 0.000000 NA 1.000000 25.200000 IGS_135 igs trnL-CAA|ycf2 trnL-CAA-ycf2 142179 142424 0 246 IRa 0.008130 2 0 167 93 no 1.000000 2 1.000000 NA 1.000000 49.100000 ycf2 gene ycf2 ycf2 142425 146951 -1 4527 IRa 0.010507 47 54 39 26 no 1.000000 2 1.000000 NA 0.988072 47.400000 IGS_136 igs ycf2|trnM-CAU ycf2-trnM-CAU 146952 149258 0 2307 IRa 0.024030 52 143 250 300 yes 1.000000 2 1.000000 NA 0.938015 75.200000 trnM-CAU tRNA trnM-CAU trnM-CAU 149259 149332 1 74 IRa 0.000000 0 0 70 300 no 0.000000 1 0.000000 NA 1.000000 24.000000 IGS_137 igs trnM-CAU|rpl23 trnM-CAU-rpl23 149333 149696 0 364 IRa 0.000000 0 65 144 81 no 1.000000 2 1.000000 NA 0.821429 46.100000 rpl23 gene rpl23 rpl23 149697 149978 1 282 IRa 0.003546 1 0 300 300 no 1.000000 2 1.000000 NA 1.000000 54.500000 IGS_138 igs rpl23|rpl2 rpl23-rpl2 149979 149996 0 18 IRa 0.000000 0 0 200 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 149997 151486 1 1490 IRa 0.004027 6 0 218 4 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_139 igs rpl2|trnH-GUG rpl2-trnH-GUG 151487 14 0 73 IRa 0.028986 2 4 45 27 no 1.000000 2 1.000000 NA 0.945205 60.700000