primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnK-UUU-rps16_p1 trnK-UUU-rps16 1 AAAGCCGAGTACTCTACCGT TTCTTGAAAGGGGTGCTCAG 20 20 50.0 50.0 58.2 57.7 20.3 0.0 0.445152 4308 4841 677-678 1.000000 78.9 trnK-UUU-rps16_p2 trnK-UUU-rps16 2 AAGCCGAGTACTCTACCGTT TTCTTGAAAGGGGTGCTCAG 20 20 50.0 50.0 58.2 57.7 20.3 0.0 0.445152 4308 4841 676-677 1.000000 78.9 trnK-UUU-rps16_p3 trnK-UUU-rps16 3 AAAGCCGAGTACTCTACCGT GGAGTCTAGTTCAGCGTCAC 20 20 50.0 55.0 58.2 57.7 20.3 0.0 0.434067 4308 4841 1177-1178 1.000000 78.4 trnK-UUU-rps16_p4 trnK-UUU-rps16 4 AAGCCGAGTACTCTACCGTT GGAGTCTAGTTCAGCGTCAC 20 20 50.0 55.0 58.2 57.7 20.3 0.0 0.434067 4308 4841 1176-1177 1.000000 78.4 trnK-UUU-rps16_p5 trnK-UUU-rps16 5 TCAGTCGTGGTCTTCCAAAC GGAGTCTAGTTCAGCGTCAC 20 20 50.0 55.0 57.8 57.7 0.0 0.0 0.499947 4308 4841 1262-1263 1.000000 77.8 rps16-trnQ-UUG_p1 rps16-trnQ-UUG 1 TGACTTGTGTTGGATTGGCA GGGTTTTGATCCCGGCATAT 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.069057 5118 7070 2410-2410 0.500000 59.4 rps16-trnQ-UUG_p2 rps16-trnQ-UUG 2 ACTTGTGTTGGATTGGCACT GGGTTTTGATCCCGGCATAT 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.076401 5118 7070 2408-2408 0.500000 59.4 rps16-trnQ-UUG_p3 rps16-trnQ-UUG 3 TGACTTGTGTTGGATTGGCA AGATATTGGCGAGCTGTTGG 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.105392 5118 7070 2612-2612 0.500000 59.2 rps16-trnQ-UUG_p4 rps16-trnQ-UUG 4 ACTTGTGTTGGATTGGCACT AGATATTGGCGAGCTGTTGG 20 20 45.0 50.0 57.9 58.0 0.0 0.0 0.112736 5118 7070 2610-2610 0.500000 59.1 rps16-trnQ-UUG_p5 rps16-trnQ-UUG 5 TGACTTGTGTTGGATTGGCA TTGGCAAACGGACGTTTTTC 20 20 45.0 45.0 57.9 58.1 0.0 18.9 0.153746 5118 7070 2596-2596 0.500000 58.8 trnQ-UUG_p1 trnQ-UUG 1 TTAGTCCAACCAAGCCAACC CGAAAACTTACAGCGGCTTG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.059822 7071 7142 1351-1354 1.000000 82.7 trnQ-UUG_p2 trnQ-UUG 2 TTAGTCCAACCAAGCCAACC ATCGAAAACTTACAGCGGCT 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.105056 7071 7142 1353-1356 1.000000 82.3 trnQ-UUG_p3 trnQ-UUG 3 GTCCAACCAAGCCAACCATA CGAAAACTTACAGCGGCTTG 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.131656 7071 7142 1348-1351 1.000000 82.1 trnQ-UUG_p4 trnQ-UUG 4 TTAGTCCAACCAAGCCAACC TCGAAAACTTACAGCGGCTT 20 20 50.0 45.0 58.0 58.1 0.0 0.0 0.136596 7071 7142 1352-1355 1.000000 82.1 trnQ-UUG_p5 trnQ-UUG 5 TTAGTCCAACCAAGCCAACC GGGCAATTTGGCGAAGAAAA 20 20 50.0 45.0 58.0 57.8 0.0 15.8 0.172613 7071 7142 1250-1253 1.000000 82.1 trnQ-UUG-psbK_p1 trnQ-UUG-psbK 1 ATATGCCGGGATCAAAACCC CGAAAACTTACAGCGGCTTG 20 20 50.0 50.0 58.0 58.0 13.5 0.0 0.054152 7143 7692 776-779 1.000000 83.4 trnQ-UUG-psbK_p2 trnQ-UUG-psbK 2 TTAGTCCAACCAAGCCAACC CGAAAACTTACAGCGGCTTG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.059822 7143 7692 1351-1354 1.000000 82.7 trnQ-UUG-psbK_p3 trnQ-UUG-psbK 3 ATATGCCGGGATCAAAACCC CTTCACGTCCAGGATTACGG 20 20 50.0 55.0 58.0 58.1 13.5 4.3 0.082053 7143 7692 1336-1339 1.000000 82.0 trnQ-UUG-psbK_p4 trnQ-UUG-psbK 4 ATATGCCGGGATCAAAACCC AAAAGGAAAAGGGCCGGAAT 20 20 50.0 45.0 58.0 58.0 13.5 5.0 0.028799 7143 7692 958-958 0.500000 59.8 trnQ-UUG-psbK_p5 trnQ-UUG-psbK 5 TTAGTCCAACCAAGCCAACC AAAAGGAAAAGGGCCGGAAT 20 20 50.0 45.0 58.0 58.0 0.0 5.0 0.034469 7143 7692 1533-1533 0.500000 59.7 atpH-trnD-GUC_p1 atpH-trnD-GUC 1 ATAACGGAAGCGGCAGAAAT TTCAATTGGTCAGAGCACCG 20 20 45.0 50.0 58.0 58.5 1.4 5.4 0.515719 14055 15090 1131-1132 1.000000 76.9 atpH-trnD-GUC_p2 atpH-trnD-GUC 2 AGCCAATCCAGCAGCAATAA TTCAATTGGTCAGAGCACCG 20 20 45.0 50.0 57.9 58.5 0.0 5.4 0.625777 14055 15090 1147-1148 1.000000 76.0 atpH-trnD-GUC_p3 atpH-trnD-GUC 3 AATAACGGAAGCGGCAGAAA TTCAATTGGTCAGAGCACCG 20 20 45.0 50.0 58.2 58.5 1.4 5.4 0.661257 14055 15090 1132-1133 1.000000 75.7 atpH-trnD-GUC_p4 atpH-trnD-GUC 4 GCCAATCCAGCAGCAATAAC TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 57.8 58.5 0.0 5.4 0.691719 14055 15090 1146-1147 1.000000 75.4 atpH-trnD-GUC_p5 atpH-trnD-GUC 5 TCCAGCAGCAATAACGGAAG TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 58.3 58.5 0.0 5.4 0.739493 14055 15090 1141-1142 1.000000 75.1 trnY-GUA-trnE-UUC_p1 trnY-GUA-trnE-UUC 1 CCAGCGTAGACATATTGCCA AAGTATGCCCCCATCGTCTA 20 20 50.0 50.0 57.8 57.9 0.0 0.0 0.336052 15358 15416 202-202 1.000000 78.1 trnY-GUA-trnE-UUC_p2 trnY-GUA-trnE-UUC 2 ACCAGCGTAGACATATTGCC AAGTATGCCCCCATCGTCTA 20 20 50.0 50.0 57.8 57.9 0.0 0.0 0.337603 15358 15416 203-203 1.000000 78.1 trnY-GUA-trnE-UUC_p3 trnY-GUA-trnE-UUC 3 CCAGCGTAGACATATTGCCA TCTCTTTCAAGGAGGCAACG 20 20 50.0 50.0 57.8 57.8 0.0 0.0 0.408774 15358 15416 167-167 1.000000 77.7 trnY-GUA-trnE-UUC_p4 trnY-GUA-trnE-UUC 4 ACCAGCGTAGACATATTGCC TCTCTTTCAAGGAGGCAACG 20 20 50.0 50.0 57.8 57.8 0.0 0.0 0.410326 15358 15416 168-168 1.000000 77.7 trnY-GUA-trnE-UUC_p5 trnY-GUA-trnE-UUC 5 CGAATTTACAGTCCGTCCCC AAGTATGCCCCCATCGTCTA 20 20 55.0 50.0 58.4 57.9 0.0 0.0 0.448606 15358 15416 181-181 1.000000 77.3 trnT-GGU-psbD_p1 trnT-GGU-psbD 1 GTGGTAGAGTAACGCCATGG GGACCAGCCTACAAAAACGA 20 20 55.0 50.0 58.1 58.1 7.6 0.0 0.177181 16349 17452 1264-1335 1.000000 79.5 trnT-GGU-psbD_p2 trnT-GGU-psbD 2 TCAGTGGTAGAGTAACGCCA GGACCAGCCTACAAAAACGA 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.199336 16349 17452 1267-1338 1.000000 79.3 trnT-GGU-psbD_p3 trnT-GGU-psbD 3 AACACGCCCCTTTAACTCAG GGACCAGCCTACAAAAACGA 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.220904 16349 17452 1283-1354 1.000000 79.1 trnT-GGU-psbD_p4 trnT-GGU-psbD 4 GGCGTAAGTCCTTGGTTCAA GGACCAGCCTACAAAAACGA 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.226227 16349 17452 1241-1312 1.000000 79.1 trnT-GGU-psbD_p5 trnT-GGU-psbD 5 GTGGTAGAGTAACGCCATGG CAGCCTACAAAAACGAACCG 20 20 55.0 50.0 58.1 57.7 7.6 0.0 0.373965 16349 17452 1260-1331 1.000000 77.9 trnG-GCC-trnfM-CAU_p1 trnG-GCC-trnfM-CAU 1 ATGCGGATATGGTCGAATGG CTTGAGGTCACCGGTTCAAA 20 20 50.0 50.0 57.9 58.0 0.0 17.7 0.137348 21051 21225 282-282 1.000000 80.9 trnG-GCC-trnfM-CAU_p2 trnG-GCC-trnfM-CAU 2 ATGCGGATATGGTCGAATGG AGTTCTTCTCTTAAGCGCGG 20 20 50.0 50.0 57.9 58.0 0.0 8.8 0.101472 21051 21225 337-337 1.000000 80.8 trnG-GCC-trnfM-CAU_p3 trnG-GCC-trnfM-CAU 3 ATGCGGATATGGTCGAATGG GTTCTTCTCTTAAGCGCGGA 20 20 50.0 50.0 57.9 58.0 0.0 8.8 0.106972 21051 21225 336-336 1.000000 80.8 trnG-GCC-trnfM-CAU_p4 trnG-GCC-trnfM-CAU 4 ATGCGGATATGGTCGAATGG TCTCTTAAGCGCGGAGTAGA 20 20 50.0 50.0 57.9 58.0 0.0 8.8 0.133246 21051 21225 331-331 1.000000 80.6 trnG-GCC-trnfM-CAU_p5 trnG-GCC-trnfM-CAU 5 TCTTTGCCAAGGAGAAGACG AGTTCTTCTCTTAAGCGCGG 20 20 50.0 50.0 57.8 58.0 0.0 8.8 0.172163 21051 21225 308-308 1.000000 80.4 rpoB-rpoC1_p1 rpoB-rpoC1 1 ACGATCTTTGGCTCTGGAAC TTTGTCACCTCGCCAACTAG 20 20 50.0 50.0 57.9 57.8 0.0 0.0 0.264423 34831 34859 221-221 1.000000 78.2 rpoB-rpoC1_p2 rpoB-rpoC1 2 ACGATCTTTGGCTCTGGAAC AGGCAGGATTTTATTGGCCC 20 20 50.0 50.0 57.9 58.2 0.0 0.0 0.307191 34831 34859 192-192 1.000000 78.0 rpoB-rpoC1_p3 rpoB-rpoC1 3 CGACTGCTTGTTCGAGAACT TTTGTCACCTCGCCAACTAG 20 20 50.0 50.0 58.2 57.8 15.8 0.0 0.391635 34831 34859 241-241 1.000000 77.2 rpoB-rpoC1_p4 rpoB-rpoC1 4 TCGACTGCTTGTTCGAGAAC TTTGTCACCTCGCCAACTAG 20 20 50.0 50.0 58.2 57.8 8.9 0.0 0.396529 34831 34859 242-242 1.000000 77.2 rpoB-rpoC1_p5 rpoB-rpoC1 5 CGACTGCTTGTTCGAGAACT AGGCAGGATTTTATTGGCCC 20 20 50.0 50.0 58.2 58.2 15.8 0.0 0.434404 34831 34859 212-212 1.000000 76.9 trnC-GCA-trnM-CAU_p1 trnC-GCA-trnM-CAU 1 ATTTGCAGTCCCCCGCCTTA GGATGGGTCCCATTTGGTTT 20 20 55.0 50.0 61.9 58.0 0.0 24.8 3.907529 45684 47391 1856-2203 1.000000 53.4 trnC-GCA-trnM-CAU_p2 trnC-GCA-trnM-CAU 2 ATTTGCAGTCCCCCGCCTTA TATTGCTTTCATACGGCGGG 20 20 55.0 50.0 61.9 58.4 0.0 13.2 4.270065 45684 47391 1795-2142 1.000000 50.6 trnC-GCA-trnM-CAU_p3 trnC-GCA-trnM-CAU 3 ATTTGCAGTCCCCCGCCTTA GTATTGCTTTCATACGGCGG 20 20 55.0 50.0 61.9 57.3 0.0 13.2 4.522018 45684 47391 1796-2143 1.000000 48.6 trnC-GCA-trnM-CAU_p4 trnC-GCA-trnM-CAU 4 TTTGCAGTCCCCCGCCTTA GGATGGGTCCCATTTGGTTT 19 20 57.9 50.0 61.5 58.0 0.0 24.8 4.579463 45684 47391 1855-2202 1.000000 48.0 trnC-GCA-trnM-CAU_p5 trnC-GCA-trnM-CAU 5 ATTTGCAGTCCCCCGCCTTA GCGGGAGTCATTGGTTCAAA 20 20 55.0 50.0 61.9 58.8 0.0 0.0 4.614837 45684 47391 1780-2127 1.000000 47.9 trnV-UAC-ndhC_p1 trnV-UAC-ndhC 1 GGTTCGAATCCGTATAGCCC CTGGTCCTTTGCTAATGGGG 20 20 55.0 55.0 57.9 58.2 0.0 0.0 0.308220 48315 49180 1003-1003 1.000000 78.3 trnV-UAC-ndhC_p2 trnV-UAC-ndhC 2 GGTTCGAATCCGTATAGCCC TCCTTTGCTAATGGGGGCTA 20 20 55.0 50.0 57.9 58.4 0.0 0.0 0.473539 48315 49180 999-999 1.000000 76.9 trnV-UAC-ndhC_p3 trnV-UAC-ndhC 3 GGTTCGAATCCGTATAGCCC CCTTTGCTAATGGGGGCTAA 20 20 55.0 50.0 57.9 57.5 0.0 0.0 0.528579 48315 49180 998-998 1.000000 76.5 trnV-UAC-ndhC_p4 trnV-UAC-ndhC 4 CGGTTCGAATCCGTATAGCC CTGGTCCTTTGCTAATGGGG 20 20 55.0 55.0 58.3 58.2 22.8 0.0 0.537602 48315 49180 1004-1004 1.000000 76.4 trnV-UAC-ndhC_p5 trnV-UAC-ndhC 5 GGTTCGAATCCGTATAGCCC GGGCTAAAACTCCCGAAAGA 20 20 55.0 50.0 57.9 57.5 0.0 0.0 0.560721 48315 49180 985-985 1.000000 76.2 petA-psbJ_p1 petA-psbJ 1 CTTTTGCTCTTCTTGGCAGC ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 57.9 57.6 0.0 4.1 0.426712 61259 62256 1111-1123 1.000000 78.0 petA-psbJ_p2 petA-psbJ 2 GCTCTTCTTGGCAGCTGTTA ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 58.2 57.6 16.6 4.1 0.551459 61259 62256 1106-1118 1.000000 77.0 petA-psbJ_p3 petA-psbJ 3 TTTTGCTCTTCTTGGCAGCT ATTCCGGATTGGGTTCATCC 20 20 45.0 50.0 58.3 57.6 0.0 4.1 0.668909 61259 62256 1110-1122 1.000000 76.1 petA-psbJ_p4 petA-psbJ 4 CGTGTCCAAGGTCTTTTGCT ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 58.7 57.6 0.0 4.1 1.055974 61259 62256 1123-1135 1.000000 73.0 petA-psbJ_p5 petA-psbJ 5 GGTCTTTTGCTCTTCTTGGC ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 57.3 57.6 0.0 4.1 1.078868 61259 62256 1114-1126 1.000000 72.8 rps12-trnQ-UUG_p1 rps12-trnQ-UUG 1 TGACCCTGTTAGTCCGTTCT GGGTTTTGATCCCGGCATAT 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.009994 68477 70904 2897-2897 1.000000 81.1 rps12-trnQ-UUG_p2 rps12-trnQ-UUG 2 CTGAACGAGTCGCACATACA GGGTTTTGATCCCGGCATAT 20 20 50.0 50.0 58.0 58.0 13.6 0.0 0.027435 68477 70904 2602-2602 1.000000 81.0 rps12-trnQ-UUG_p3 rps12-trnQ-UUG 3 TTATGAGGGTTGGCTGGGTA GGGTTTTGATCCCGGCATAT 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.030596 68477 70904 2919-2919 1.000000 80.9 rps12-trnQ-UUG_p4 rps12-trnQ-UUG 4 CTGAACGAGTCGCACATACA AGATATTGGCGAGCTGTTGG 20 20 50.0 50.0 58.0 58.0 13.6 0.0 0.063770 68477 70904 2804-2804 0.500000 59.5 rps12-trnQ-UUG_p5 rps12-trnQ-UUG 5 AGCGGGGGATTTTGAAACAT GGGTTTTGATCCCGGCATAT 20 20 45.0 50.0 58.1 58.0 0.0 0.0 0.067433 68477 70904 2542-2542 0.500000 59.5 trnQ-UUG_p1 trnQ-UUG 1 TTAGTCCAACCAAGCCAACC CATATTCGGCGACCTGTTGA 20 20 50.0 50.0 58.0 58.1 0.0 10.2 0.075705 70905 70976 1094-1097 1.000000 83.4 trnQ-UUG_p2 trnQ-UUG 2 TTAGTCCAACCAAGCCAACC TCATATTCGGCGACCTGTTG 20 20 50.0 50.0 58.0 58.1 0.0 10.2 0.075705 70905 70976 1095-1098 1.000000 83.4 trnQ-UUG_p3 trnQ-UUG 3 TTAGTCCAACCAAGCCAACC TACGCAATGGGAAGGTTGAG 20 20 50.0 50.0 58.0 57.9 0.0 3.8 0.118244 70905 70976 1138-1141 1.000000 82.9 trnQ-UUG_p4 trnQ-UUG 4 TTAGTCCAACCAAGCCAACC ACCTCTTGACACCTAGGCAT 20 20 50.0 50.0 58.0 58.0 0.0 9.3 0.052005 70905 70976 1031-1031 0.500000 59.6 trnQ-UUG_p5 trnQ-UUG 5 GTCCAACCAAGCCAACCATA ACCTCTTGACACCTAGGCAT 20 20 50.0 50.0 58.1 58.0 0.0 9.3 0.123840 70905 70976 1028-1028 0.500000 59.0 rps3_p1 rps3 1 ATAGAAGGGAAGGGCAAGGT CCACAAGATGACTATGCATTCG 20 22 50.0 45.5 58.0 57.5 0.0 3.5 2.476436 82030 82686 739-739 1.000000 62.1 rps3_p2 rps3 2 TCGAATAGAAGGGAAGGGCA CCACAAGATGACTATGCATTCG 20 22 50.0 45.5 58.1 57.5 0.0 3.5 2.589386 82030 82686 743-743 1.000000 61.2 rps3_p3 rps3 3 TAGAAGGGAAGGGCAAGGTT CCACAAGATGACTATGCATTCG 20 22 50.0 45.5 58.2 57.5 0.0 3.5 2.708315 82030 82686 738-738 1.000000 60.3 rps3_p4 rps3 4 GAAGGGAAGGGCAAGGTTTA CCACAAGATGACTATGCATTCG 20 22 50.0 45.5 57.4 57.5 0.0 3.5 3.061093 82030 82686 736-736 1.000000 57.5 rps3_p5 rps3 5 ATAGAAGGGAAGGGCAAGGT CACAAGATGACTATGCATTCGT 20 22 50.0 40.9 58.0 56.9 0.0 3.5 3.144176 82030 82686 738-738 1.000000 56.8 trnL-UAG-rpl32_p1 trnL-UAG-rpl32 1 AGCGTGTCTACCGATTTCAC TCTAGGTCGGCGTTAAAAGC 20 20 50.0 50.0 58.0 58.0 0.0 6.8 0.008260 124072 124920 968-968 1.000000 81.8 trnL-UAG-rpl32_p2 trnL-UAG-rpl32 2 CAGCGTGTCTACCGATTTCA TCTAGGTCGGCGTTAAAAGC 20 20 50.0 50.0 58.0 58.0 0.0 6.8 0.009630 124072 124920 969-969 1.000000 81.8 trnL-UAG-rpl32_p3 trnL-UAG-rpl32 3 AGCGTGTCTACCGATTTCAC CTAGGTCGGCGTTAAAAGCT 20 20 50.0 50.0 58.0 58.0 0.0 6.8 0.013801 124072 124920 967-967 1.000000 81.8 trnL-UAG-rpl32_p4 trnL-UAG-rpl32 4 CAGCGTGTCTACCGATTTCA CTAGGTCGGCGTTAAAAGCT 20 20 50.0 50.0 58.0 58.0 0.0 6.8 0.015171 124072 124920 968-968 1.000000 81.8 trnL-UAG-rpl32_p5 trnL-UAG-rpl32 5 AGCGTGTCTACCGATTTCAC GGCGTTAAAAGCTTTGGCAT 20 20 50.0 45.0 58.0 57.9 0.0 13.5 0.086679 124072 124920 960-960 1.000000 81.2 ycf1_p1 ycf1 1 ACTCCGAGCCCATAGTCTAC TCTTTCACAGAGTCCCTCGT 20 20 55.0 50.0 58.0 58.0 0.0 0.0 0.019136 138112 138231 1129-1210 1.000000 81.8 ycf1_p2 ycf1 2 ACCACTCGGTCTTTTGCAAT TCTTTCACAGAGTCCCTCGT 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.021945 138112 138231 1242-1323 1.000000 81.7 ycf1_p3 ycf1 3 AGTCCCCAGAAAGCCCTTAT TCTTTCACAGAGTCCCTCGT 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.016122 138112 138231 1453-1534 1.000000 81.6 ycf1_p4 ycf1 4 ATAGTCCCCAGAAAGCCCTT TCTTTCACAGAGTCCCTCGT 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.016122 138112 138231 1455-1536 1.000000 81.6 ycf1_p5 ycf1 5 GTTTATGGGTTTGACGTGCG TCTTTCACAGAGTCCCTCGT 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.044785 138112 138231 1040-1040 0.500000 59.6