primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnH(GUG)-psbA_p1 trnH(GUG)-psbA 1 TCACAATCCACTGCCTTGTC TAACCGGGCTAACCTTGGTA 20 20 50.0 50.0 58.1 58.1 0.0 6.3 0.153981 78 414 475-475 1.000000 79.6 trnH(GUG)-psbA_p2 trnH(GUG)-psbA 2 TTCACAATCCACTGCCTTGT TAACCGGGCTAACCTTGGTA 20 20 45.0 50.0 57.6 58.1 0.0 6.3 0.413507 78 414 476-476 1.000000 77.5 trnH(GUG)-psbA_p3 trnH(GUG)-psbA 3 TCACAATCCACTGCCTTGTC ATTAACCGGGCTAACCTTGG 20 20 50.0 50.0 58.1 57.6 0.0 6.3 0.534028 78 414 477-477 1.000000 76.6 trnH(GUG)-psbA_p4 trnH(GUG)-psbA 4 TTGTCCACTTGGCTACATCC TAACCGGGCTAACCTTGGTA 20 20 50.0 50.0 57.5 58.1 0.0 6.3 0.540139 78 414 460-460 1.000000 76.5 trnH(GUG)-psbA_p5 trnH(GUG)-psbA 5 CCTTGTCCACTTGGCTACAT TAACCGGGCTAACCTTGGTA 20 20 50.0 50.0 57.5 58.1 0.0 6.3 0.547099 78 414 462-462 1.000000 76.5 matK-trnK(UUU)_p1 matK-trnK(UUU) 1 CCATGATCATGAGCAAGTGC AACGGTAGAGTACTCGGCTT 20 20 50.0 50.0 57.2 58.2 32.7 17.1 0.944732 3547 4274 859-859 1.000000 73.0 matK-trnK(UUU)_p2 matK-trnK(UUU) 2 CCATGATCATGAGCAAGTGC ACGGTAGAGTACTCGGCTTT 20 20 50.0 50.0 57.2 58.2 32.7 17.1 0.944732 3547 4274 858-858 1.000000 73.0 matK-trnK(UUU)_p3 matK-trnK(UUU) 3 CCATGATCATGAGCAAGTGC GGGTTTGATTGCCTCGTCTA 20 20 50.0 50.0 57.2 57.6 32.7 0.0 1.172901 3547 4274 941-941 1.000000 71.1 matK-trnK(UUU)_p4 matK-trnK(UUU) 4 CCATGATCATGAGCAAGTGC TAGGGTTTGATTGCCTCGTC 20 20 50.0 50.0 57.2 57.6 32.7 0.0 1.172901 3547 4274 943-943 1.000000 71.1 matK-trnK(UUU)_p5 matK-trnK(UUU) 5 CCATGATCATGAGCAAGTGC GGGTTGCTAACTCAACGGTA 20 20 50.0 50.0 57.2 57.5 32.7 0.0 1.237069 3547 4274 872-872 1.000000 70.7 rps16-trnD(GUC)_p1 rps16-trnD(GUC) 1 TTCCTTCTCTTCGGGATCGA TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 57.9 58.5 0.0 5.4 0.616655 5110 6060 1099-1106 1.000000 76.3 rps16-trnD(GUC)_p2 rps16-trnD(GUC) 2 CGGTGCTTTTTACCACATCG TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 57.8 58.5 0.0 5.4 0.718591 5110 6060 1049-1056 1.000000 75.5 rps16-trnD(GUC)_p3 rps16-trnD(GUC) 3 CGGGATCGAACATCAATTGC TTCAATTGGTCAGAGCACCG 20 20 50.0 50.0 57.6 58.5 0.0 5.4 0.867045 5110 6060 1088-1095 1.000000 74.3 rps16-trnD(GUC)_p4 rps16-trnD(GUC) 4 ATAAGTCGCACGGTGCTTTT TTCAATTGGTCAGAGCACCG 20 20 45.0 50.0 58.5 58.5 28.4 5.4 0.957923 5110 6060 1059-1066 1.000000 73.6 rps16-trnD(GUC)_p5 rps16-trnD(GUC) 5 CTTCCTTCTCTTCGGGATCG TTCAATTGGTCAGAGCACCG 20 20 55.0 50.0 57.5 58.5 0.0 5.4 0.977840 5110 6060 1100-1107 1.000000 73.4 trnE(UUC)-trnT(GGU)_p1 trnE(UUC)-trnT(GGU) 1 CGTTGCCTCCTTGAAAGAGA GGACTTACGCCTTACCATGG 20 20 50.0 55.0 57.8 58.1 0.0 11.2 0.220367 6451 8406 1869-2054 1.000000 83.2 trnE(UUC)-trnT(GGU)_p2 trnE(UUC)-trnT(GGU) 2 TGTCCTGAACCACTAGACGA GGACTTACGCCTTACCATGG 20 20 50.0 55.0 57.7 58.1 0.0 11.2 0.332074 6451 8406 1847-2032 1.000000 82.3 trnE(UUC)-trnT(GGU)_p3 trnE(UUC)-trnT(GGU) 3 CGTTGCCTCCTTGAAAGAGA ACTTACGCCTTACCATGGTG 20 20 50.0 50.0 57.8 57.6 0.0 28.2 0.566422 6451 8406 1867-2052 1.000000 80.4 trnE(UUC)-trnT(GGU)_p4 trnE(UUC)-trnT(GGU) 4 CCTGAACCACTAGACGATGG GGACTTACGCCTTACCATGG 20 20 55.0 55.0 57.4 58.1 0.0 11.2 0.636793 6451 8406 1844-2029 1.000000 79.9 trnE(UUC)-trnT(GGU)_p5 trnE(UUC)-trnT(GGU) 5 CTGAACCACTAGACGATGGG GGACTTACGCCTTACCATGG 20 20 55.0 55.0 57.4 58.1 0.0 11.2 0.636793 6451 8406 1843-2028 1.000000 79.9 psaA-ycf3_p1 psaA-ycf3 1 TGAAAAATGACCCGGTCTGG ATCAAGCCGCTGAGTATTGG 20 20 50.0 50.0 58.1 58.0 18.5 0.0 0.136672 18651 19380 927-927 1.000000 79.4 psaA-ycf3_p2 psaA-ycf3 2 GCCCATTCCTCGAAAGAAGT ATCAAGCCGCTGAGTATTGG 20 20 50.0 50.0 57.9 58.0 4.1 0.0 0.156301 18651 19380 908-908 1.000000 79.3 psaA-ycf3_p3 psaA-ycf3 3 TGAAAAATGACCCGGTCTGG CGATCAAGCCGCTGAGTATT 20 20 50.0 50.0 58.1 58.1 18.5 0.0 0.237622 18651 19380 929-929 1.000000 78.6 psaA-ycf3_p4 psaA-ycf3 4 GCCCATTCCTCGAAAGAAGT CGATCAAGCCGCTGAGTATT 20 20 50.0 50.0 57.9 58.1 4.1 0.0 0.257251 18651 19380 910-910 1.000000 78.5 psaA-ycf3_p5 psaA-ycf3 5 TGAAAAATGACCCGGTCTGG TTGAAGATCACGAGGCGTTT 20 20 50.0 45.0 58.1 57.8 18.5 0.0 0.259531 18651 19380 856-856 1.000000 78.5 trnT(UGU)-psbM_p1 trnT(UGU)-psbM 1 AAGCCTACTCTCGGAATCGA AAAATGAACAGTGCCGTAGC 20 20 50.0 45.0 57.9 57.0 0.0 0.0 1.043655 23592 24635 1156-1165 1.000000 75.0 trnT(UGU)-psbM_p2 trnT(UGU)-psbM 2 AGCCTACTCTCGGAATCGAA AAAATGAACAGTGCCGTAGC 20 20 50.0 45.0 57.9 57.0 0.0 0.0 1.043655 23592 24635 1155-1164 1.000000 75.0 trnT(UGU)-psbM_p3 trnT(UGU)-psbM 3 CGATGACCTCCGCATTACAA AAAATGAACAGTGCCGTAGC 20 20 50.0 45.0 58.1 57.0 0.0 0.0 1.054834 23592 24635 1134-1143 1.000000 74.9 trnT(UGU)-psbM_p4 trnT(UGU)-psbM 4 GCCTACTCTCGGAATCGAAC AAAATGAACAGTGCCGTAGC 20 20 55.0 45.0 57.9 57.0 0.0 0.0 1.111985 23592 24635 1154-1163 1.000000 74.4 trnT(UGU)-psbM_p5 trnT(UGU)-psbM 5 GAATCGAACCGATGACCTCC AAAATGAACAGTGCCGTAGC 20 20 55.0 45.0 58.1 57.0 2.4 0.0 1.135196 23592 24635 1143-1152 1.000000 74.3 trnR(UCU)-trnG(UCC)_p1 trnR(UCU)-trnG(UCC) 1 AGGGAAAAATTGCGTCCAAT AGCCTTCCAAGCTAACGATG 20 20 40.0 50.0 56.2 58.0 5.1 0.0 1.844133 51284 51450 293-293 1.000000 66.1 trnR(UCU)-trnG(UCC)_p2 trnR(UCU)-trnG(UCC) 2 AGGGAAAAATTGCGTCCAAT CCTAGCCTTCCAAGCTAACG 20 20 40.0 55.0 56.2 58.1 5.1 0.0 1.872970 51284 51450 296-296 1.000000 65.8 trnR(UCU)-trnG(UCC)_p3 trnR(UCU)-trnG(UCC) 3 AGAAGACCTCTGTCCTATCCA AGCCTTCCAAGCTAACGATG 21 20 47.6 50.0 56.9 58.0 0.0 0.0 2.081443 51284 51450 247-247 1.000000 64.3 trnR(UCU)-trnG(UCC)_p4 trnR(UCU)-trnG(UCC) 4 AGAAGACCTCTGTCCTATCCA CCTAGCCTTCCAAGCTAACG 21 20 47.6 55.0 56.9 58.1 0.0 0.0 2.110280 51284 51450 250-250 1.000000 64.1 trnR(UCU)-trnG(UCC)_p5 trnR(UCU)-trnG(UCC) 5 AGGGAAAAATTGCGTCCAAT CCCTAGCCTTCCAAGCTAAC 20 20 40.0 55.0 56.2 57.7 5.1 0.0 2.147983 51284 51450 297-297 1.000000 63.6 psbK-trnQ(UUG)_p1 psbK-trnQ(UUG) 1 CGAAAACTTACAGCGGCTTG CTATTATCGCGCGGAACTGA 20 20 50.0 50.0 58.0 58.0 0.0 31.7 0.095811 53883 54465 1392-1557 1.000000 83.5 psbK-trnQ(UUG)_p2 psbK-trnQ(UUG) 2 CGAAAACTTACAGCGGCTTG TCTATTATCGCGCGGAACTG 20 20 50.0 50.0 58.0 58.0 0.0 31.7 0.095811 53883 54465 1393-1558 1.000000 83.5 psbK-trnQ(UUG)_p3 psbK-trnQ(UUG) 3 TTTTCGCCGCTATCGATGAA CTATTATCGCGCGGAACTGA 20 20 45.0 50.0 58.1 58.0 8.5 31.7 0.117052 53883 54465 1515-1680 1.000000 83.0 psbK-trnQ(UUG)_p4 psbK-trnQ(UUG) 4 TTTTCGCCGCTATCGATGAA TCTATTATCGCGCGGAACTG 20 20 45.0 50.0 58.1 58.0 8.5 31.7 0.117052 53883 54465 1516-1681 1.000000 83.0 psbK-trnQ(UUG)_p5 psbK-trnQ(UUG) 5 TTTTTCGCCGCTATCGATGA CTATTATCGCGCGGAACTGA 20 20 45.0 50.0 58.1 58.0 8.5 31.7 0.117052 53883 54465 1516-1681 1.000000 83.0 trnQ(UUG)_p1 trnQ(UUG) 1 AAAGAAATTCCCCGCGCTAT CTATTATCGCGCGGAACTGA 20 20 45.0 50.0 57.9 58.0 5.6 31.7 0.099065 54466 54538 888-1053 1.000000 85.5 trnQ(UUG)_p2 trnQ(UUG) 2 AAAGAAATTCCCCGCGCTAT TCTATTATCGCGCGGAACTG 20 20 45.0 50.0 57.9 58.0 5.6 31.7 0.099065 54466 54538 889-1054 1.000000 85.5 trnQ(UUG)_p3 trnQ(UUG) 3 AAAGAAATTCCCCGCGCTAT CTAGAGTCAGGCCAAGACCT 20 20 45.0 55.0 57.9 58.1 5.6 20.8 0.193480 54466 54538 814-979 1.000000 85.2 trnQ(UUG)_p4 trnQ(UUG) 4 AAAGAAATTCCCCGCGCTAT TCTAGAGTCAGGCCAAGACC 20 20 45.0 55.0 57.9 58.1 5.6 20.8 0.198819 54466 54538 815-980 1.000000 85.2 trnQ(UUG)_p5 trnQ(UUG) 5 CGAAAACTTACAGCGGCTTG AGCAACGCATTTTGAATCCG 20 20 50.0 45.0 58.0 58.0 0.0 0.0 0.068275 54466 54538 1795-1960 1.000000 82.9 clpP-petA_p1 clpP-petA 1 CCTTCTCCGATTCTGGCTTC CTTTTGCTCTTCTTGGCAGC 20 20 55.0 50.0 58.1 57.9 0.0 0.0 0.114995 63505 64847 1509-1524 1.000000 81.6 clpP-petA_p2 clpP-petA 2 CCTTCTCCGATTCTGGCTTC GCTCTTCTTGGCAGCTGTTA 20 20 55.0 50.0 58.1 58.2 0.0 16.6 0.239742 63505 64847 1504-1519 1.000000 80.6 clpP-petA_p3 clpP-petA 3 TCCTCCTTCTCCGATTCTGG CTTTTGCTCTTCTTGGCAGC 20 20 55.0 50.0 58.2 57.9 0.0 0.0 0.279954 63505 64847 1513-1528 1.000000 80.2 clpP-petA_p4 clpP-petA 4 ATCTCCGGTTTCTCCTCCTT CTTTTGCTCTTCTTGGCAGC 20 20 50.0 50.0 57.7 57.9 0.0 0.0 0.317510 63505 64847 1525-1540 1.000000 79.9 clpP-petA_p5 clpP-petA 5 CCTTCTCCGATTCTGGCTTC GGCAGCTGTTATTTTGGCAC 20 20 55.0 50.0 58.1 58.3 0.0 16.6 0.339658 63505 64847 1495-1510 1.000000 79.8 rpoA_p1 rpoA 1 CGGTTGCAAGAAATTCAGTGG CGCGTGTAGAAATCCAAACG 21 20 47.6 50.0 58.3 57.9 0.0 0.0 1.474420 75913 76920 1114-1114 1.000000 68.6 rpoA_p2 rpoA 2 TCGGTTGCAAGAAATTCAGTG CGCGTGTAGAAATCCAAACG 21 20 42.9 50.0 57.4 57.9 0.0 0.0 1.763663 75913 76920 1115-1115 1.000000 66.2 rpoA_p3 rpoA 3 CGGTTGCAAGAAATTCAGTGG AATGGCTGTAGACCTCCGAA 21 20 47.6 50.0 58.3 58.4 0.0 0.0 1.766580 75913 76920 1141-1141 1.000000 66.2 rpoA_p4 rpoA 4 CGGTTGCAAGAAATTCAGTGG ATGGCTGTAGACCTCCGAAA 21 20 47.6 50.0 58.3 58.4 0.0 0.0 1.766580 75913 76920 1140-1140 1.000000 66.2 rpoA_p5 rpoA 5 CGGTTGCAAGAAATTCAGTGG TAATGGCTGTAGACCTCCGA 21 20 47.6 50.0 58.3 57.6 0.0 0.0 1.782492 75913 76920 1142-1142 1.000000 66.1 trnN(GUU)-ycf1_p1 trnN(GUU)-ycf1 1 AAACAAAGACGGGAATGGCT TCCGTATCCAGGCGACTAAT 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.013503 106030 106726 1392-2217 1.000000 82.5 trnN(GUU)-ycf1_p2 trnN(GUU)-ycf1 2 AACAAAGACGGGAATGGCTT TCCGTATCCAGGCGACTAAT 20 20 45.0 50.0 58.0 58.0 0.0 0.0 0.013503 106030 106726 1391-2216 1.000000 82.5 trnN(GUU)-ycf1_p3 trnN(GUU)-ycf1 3 AAACAAAGACGGGAATGGCT ACCAACAAAACTGCTCGCTA 20 20 45.0 45.0 58.0 58.0 0.0 0.0 0.042830 106030 106726 1331-2156 1.000000 82.3 trnN(GUU)-ycf1_p4 trnN(GUU)-ycf1 4 AACAAAGACGGGAATGGCTT ACCAACAAAACTGCTCGCTA 20 20 45.0 45.0 58.0 58.0 0.0 0.0 0.042830 106030 106726 1330-2155 1.000000 82.3 trnN(GUU)-ycf1_p5 trnN(GUU)-ycf1 5 AACAAAGACGGGAATGGCTT TACTGCTACCCTCTTCTCGG 20 20 45.0 55.0 58.0 57.9 0.0 0.0 0.058856 106030 106726 1021-1846 1.000000 82.2 ycf1_p1 ycf1 1 ATGCCTGCAGGAAAGTTTCA GGGTTTGGTGTGGATGAGTT 20 20 45.0 50.0 58.0 58.0 37.2 0.0 0.004976 110113 110232 864-966 1.000000 84.2 ycf1_p2 ycf1 2 ATGCCTGCAGGAAAGTTTCA AGTCCCCAGAAAGCCCTTAT 20 20 45.0 50.0 58.0 58.0 37.2 0.0 0.013272 110113 110232 1283-1385 1.000000 83.4 ycf1_p3 ycf1 3 ATGCCTGCAGGAAAGTTTCA ATAGTCCCCAGAAAGCCCTT 20 20 45.0 50.0 58.0 58.0 37.2 0.0 0.013272 110113 110232 1285-1387 1.000000 83.4 ycf1_p4 ycf1 4 ATGCCTGCAGGAAAGTTTCA AAGGAAGGGTCGTGTAGGAA 20 20 45.0 50.0 58.0 58.0 37.2 0.0 0.020159 110113 110232 1325-1427 1.000000 83.2 ycf1_p5 ycf1 5 ATGCCTGCAGGAAAGTTTCA AGGAAGGGTCGTGTAGGAAA 20 20 45.0 50.0 58.0 58.0 37.2 0.0 0.020159 110113 110232 1324-1426 1.000000 83.2 ndhD-ccsA_p1 ndhD-ccsA 1 CCTGTAATAGGCGTTGGGAT CTGCAATTGTGGCGACTCTA 20 20 50.0 50.0 57.1 58.3 0.0 7.4 1.205186 122325 122561 449-449 1.000000 71.6 ndhD-ccsA_p2 ndhD-ccsA 2 CCTGTAATAGGCGTTGGGAT TGCAATTGTGGCGACTCTAG 20 20 50.0 50.0 57.1 58.3 0.0 7.4 1.205186 122325 122561 448-448 1.000000 71.6 ndhD-ccsA_p3 ndhD-ccsA 3 CCTGTAATAGGCGTTGGGAT AATTCTGCAATTGTGGCGAC 20 20 50.0 45.0 57.1 57.6 0.0 7.4 1.283329 122325 122561 453-453 1.000000 71.0 ndhD-ccsA_p4 ndhD-ccsA 4 CCTGTAATAGGCGTTGGGAT ATTCTGCAATTGTGGCGACT 20 20 50.0 45.0 57.1 58.5 0.0 7.4 1.392779 122325 122561 452-452 1.000000 70.1 ndhD-ccsA_p5 ndhD-ccsA 5 ATAGGCGTTGGGATGTATCC TGCAATTGTGGCGACTCTAG 20 20 50.0 50.0 56.8 58.3 2.2 7.4 1.426492 122325 122561 442-442 1.000000 69.9 trnL(UAG)-rpl32_p1 trnL(UAG)-rpl32 1 AGCGTGTCTACCGATTTCAC GGCGTTAAAAGCTTTGGCAT 20 20 50.0 45.0 58.0 57.9 0.0 13.5 0.086679 123712 124566 966-969 1.000000 81.2 trnL(UAG)-rpl32_p2 trnL(UAG)-rpl32 2 CAGCGTGTCTACCGATTTCA GGCGTTAAAAGCTTTGGCAT 20 20 50.0 45.0 58.0 57.9 0.0 13.5 0.088049 123712 124566 967-970 1.000000 81.2 trnL(UAG)-rpl32_p3 trnL(UAG)-rpl32 3 TCCTAAGAGCAGCGTGTCTA GGCGTTAAAAGCTTTGGCAT 20 20 50.0 45.0 57.9 57.9 0.0 13.5 0.203126 123712 124566 976-979 1.000000 80.3 trnL(UAG)-rpl32_p4 trnL(UAG)-rpl32 4 AGCGTGTCTACCGATTTCAC ATTTGGAAAGGGAAGGGCTC 20 20 50.0 50.0 58.0 57.8 0.0 0.0 0.245914 123712 124566 992-995 1.000000 79.9 trnL(UAG)-rpl32_p5 trnL(UAG)-rpl32 5 CAGCGTGTCTACCGATTTCA ATTTGGAAAGGGAAGGGCTC 20 20 50.0 50.0 58.0 57.8 0.0 0.0 0.247285 123712 124566 993-996 1.000000 79.9 rpl32-ndhF_p1 rpl32-ndhF 1 ATGCCAAAGCTTTTAACGCC CTGGAAGTGGAAAGAAGGGT 20 20 45.0 50.0 57.9 57.0 9.5 0.0 1.038314 124729 125673 1095-1097 1.000000 72.7 rpl32-ndhF_p2 rpl32-ndhF 2 GAGCCCTTCCCTTTCCAAAT CTGGAAGTGGAAAGAAGGGT 20 20 50.0 50.0 57.8 57.0 0.0 0.0 1.197549 124729 125673 1069-1071 1.000000 71.5 rpl32-ndhF_p3 rpl32-ndhF 3 CAAAGCTTTTAACGCCGACC CTGGAAGTGGAAAGAAGGGT 20 20 50.0 50.0 58.3 57.0 9.5 0.0 1.277640 124729 125673 1091-1093 1.000000 70.8 rpl32-ndhF_p4 rpl32-ndhF 4 CCAAAGCTTTTAACGCCGAC CTGGAAGTGGAAAGAAGGGT 20 20 50.0 50.0 58.3 57.0 9.5 0.0 1.277640 124729 125673 1092-1094 1.000000 70.8 rpl32-ndhF_p5 rpl32-ndhF 5 AGCCCTTCCCTTTCCAAATT CTGGAAGTGGAAAGAAGGGT 20 20 45.0 50.0 57.3 57.0 0.0 0.0 1.681050 124729 125673 1068-1070 1.000000 67.6 ycf1-trnN(GUU)_p1 ycf1-trnN(GUU) 1 TCCGTATCCAGGCGACTAAT AAACAAAGACGGGAATGGCT 20 20 50.0 45.0 58.0 58.0 0.0 0.0 0.013503 141451 142147 1392-2217 1.000000 82.5 ycf1-trnN(GUU)_p2 ycf1-trnN(GUU) 2 TCCGTATCCAGGCGACTAAT AACAAAGACGGGAATGGCTT 20 20 50.0 45.0 58.0 58.0 0.0 0.0 0.013503 141451 142147 1391-2216 1.000000 82.5 ycf1-trnN(GUU)_p3 ycf1-trnN(GUU) 3 ACCAACAAAACTGCTCGCTA AAACAAAGACGGGAATGGCT 20 20 45.0 45.0 58.0 58.0 0.0 0.0 0.042830 141451 142147 1331-2156 1.000000 82.3 ycf1-trnN(GUU)_p4 ycf1-trnN(GUU) 4 ACCAACAAAACTGCTCGCTA AACAAAGACGGGAATGGCTT 20 20 45.0 45.0 58.0 58.0 0.0 0.0 0.042830 141451 142147 1330-2155 1.000000 82.3 ycf1-trnN(GUU)_p5 ycf1-trnN(GUU) 5 TACTGCTACCCTCTTCTCGG AACAAAGACGGGAATGGCTT 20 20 55.0 45.0 57.9 58.0 0.0 0.0 0.058856 141451 142147 1021-1846 1.000000 82.2