feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 160 234 -1 75 LSC 0.000000 0 0 33 35 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_001 igs trnH|psbA trnH-psbA 235 399 0 165 LSC 0.007273 3 0 108 300 no 0.400000 3 0.666667 0.007273 1.000000 39.900000 psbA gene psbA psbA 400 1461 -1 1062 LSC 0.000000 0 0 6 30 yes 0.000000 1 0.000000 0.000000 1.000000 25.400000 IGS_002 igs psbA|trnK psbA-trnK 1462 1769 0 308 LSC 0.006169 4 5 300 58 no 1.000000 5 1.000000 0.005587 0.993506 48.200000 trnK_part2 tRNA trnK trnK 1770 1804 -1 35 LSC 0.000000 0 0 83 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 matK gene matK matK 2073 3584 -1 1512 LSC 0.002778 9 0 244 172 yes 1.000000 5 1.000000 0.002778 1.000000 58.600000 IGS_005 igs matK|trnK matK-trnK 3585 4301 0 717 LSC 0.001395 2 4 244 73 no 0.400000 3 0.666667 0.001398 1.000000 39.600000 trnK_part1 tRNA trnK trnK 4302 4338 -1 37 LSC 0.000000 0 0 201 36 no 0.000000 1 0.000000 0.000000 1.000000 21.400000 IGS_006 igs trnK|rps16 trnK-rps16 4339 5255 0 917 LSC 0.004144 9 10 238 121 no 1.000000 5 1.000000 0.004169 1.000000 57.200000 rps16 gene rps16 rps16 5256 6376 -1 1121 LSC 0.003122 8 2 97 97 no 1.000000 5 1.000000 0.002946 1.000000 53.500000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6377 7766 0 1390 LSC 0.003888 13 15 265 300 yes 1.000000 5 1.000000 0.003903 0.998561 62.900000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 7767 7839 -1 73 LSC 0.000000 0 0 7 300 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 7840 8219 0 380 LSC 0.001053 1 2 80 114 no 0.200000 2 0.500000 0.001058 1.000000 31.600000 psbK gene psbK psbK 8220 8405 1 186 LSC 0.002151 1 0 74 30 no 0.200000 2 0.500000 0.002151 1.000000 26.400000 IGS_009 igs psbK|psbI psbK-psbI 8406 8789 0 384 LSC 0.005729 5 3 71 128 no 0.600000 4 0.750000 0.005748 1.000000 42.200000 psbI gene psbI psbI 8790 8900 1 111 LSC 0.000000 0 0 68 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_010 igs psbI|trnS-GCU psbI-trnS-GCU 8901 9003 0 103 LSC 0.003883 1 0 179 174 no 0.200000 2 0.500000 0.003883 1.000000 38.500000 trnS-GCU tRNA trnS-GCU trnS-GCU 9004 9091 1 88 LSC 0.000000 0 0 85 86 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_011 igs trnS-GCU|trnR trnS-GCU-trnR 9092 10910 0 1819 LSC 0.003634 15 8 173 152 no 1.000000 5 1.000000 0.003639 0.998351 57.600000 trnR tRNA trnR trnR 10911 10982 1 72 LSC 0.000000 0 0 144 80 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_012 igs trnR|atpA trnR-atpA 10983 11538 0 556 LSC 0.011511 14 0 216 82 yes 0.600000 4 0.750000 0.011511 1.000000 49.800000 atpA gene atpA atpA 11539 13062 -1 1524 LSC 0.001969 7 0 53 41 no 1.000000 5 1.000000 0.001969 1.000000 48.200000 IGS_013 igs atpA|atpF atpA-atpF 13063 13139 0 77 LSC 0.005195 1 2 64 300 no 0.600000 4 0.750000 0.005247 1.000000 41.800000 atpF gene atpF atpF 13140 14449 -1 1310 LSC 0.002290 7 0 35 27 no 0.400000 3 0.666667 0.002290 1.000000 36.200000 IGS_014 igs atpF|atpH atpF-atpH 14450 14788 0 339 LSC 0.004130 3 3 38 300 no 1.000000 5 1.000000 0.004152 1.000000 45.100000 atpH gene atpH atpH 14789 15034 -1 246 LSC 0.000000 0 0 18 58 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_015 igs atpH|atpI atpH-atpI 15035 15985 0 951 LSC 0.006204 14 27 264 300 yes 1.000000 5 1.000000 0.006087 1.000000 66.800000 atpI gene atpI atpI 15986 16729 -1 744 LSC 0.000538 1 0 14 300 no 0.200000 2 0.500000 0.000538 1.000000 30.200000 IGS_016 igs atpI|rps2 atpI-rps2 16730 16951 0 222 LSC 0.000000 0 14 300 146 no 0.200000 2 0.500000 0.000000 0.936937 37.300000 rps2 gene rps2 rps2 16952 17662 -1 711 LSC 0.000844 1 0 300 243 no 0.000000 2 0.000000 0.000844 1.000000 40.600000 IGS_017 igs rps2|rpoC2 rps2-rpoC2 17663 17869 0 207 LSC 0.000000 0 11 300 36 no 0.400000 3 0.666667 0.000000 1.000000 34.900000 rpoC2 gene rpoC2 rpoC2 17870 22042 -1 4173 LSC 0.001054 10 0 300 300 no 1.000000 5 1.000000 0.001054 1.000000 54.600000 IGS_018 igs rpoC2|rpoC1 rpoC2-rpoC1 22043 22230 0 188 LSC 0.000000 0 0 14 300 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 rpoC1 gene rpoC1 rpoC1 22231 25024 -1 2794 LSC 0.000931 6 0 202 300 no 1.000000 5 1.000000 0.000931 1.000000 56.700000 IGS_019 igs rpoC1|rpoB rpoC1-rpoB 25025 25050 0 26 LSC 0.000000 0 0 234 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 25051 28263 -1 3213 LSC 0.000560 4 0 260 300 no 0.600000 4 0.750000 0.000560 1.000000 48.200000 IGS_020 igs rpoB|trnC rpoB-trnC 28264 29438 0 1175 LSC 0.002426 7 28 74 191 no 1.000000 5 1.000000 0.002438 0.982128 53.400000 trnC tRNA trnC trnC 29439 29510 1 72 LSC 0.000000 0 0 6 119 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_021 igs trnC|petN trnC-petN 29511 30400 0 890 LSC 0.001806 4 4 78 300 no 0.600000 4 0.750000 0.001806 0.995506 43.900000 petN gene petN petN 30401 30490 1 90 LSC 0.000000 0 0 133 255 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 IGS_022 igs petN|psbM petN-psbM 30491 31392 0 902 LSC 0.002439 5 0 223 300 no 0.600000 4 0.750000 0.002439 1.000000 53.000000 psbM gene psbM psbM 31393 31497 -1 105 LSC 0.000000 0 0 54 262 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_023 igs psbM|trnD psbM-trnD 31498 32603 0 1106 LSC 0.003978 10 8 159 82 no 1.000000 5 1.000000 0.003997 1.000000 53.700000 trnD tRNA trnD trnD 32604 32677 -1 74 LSC 0.000000 0 0 80 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_024 igs trnD|trnY trnD-trnY 32678 32986 0 309 LSC 0.005960 4 7 154 300 no 1.000000 5 1.000000 0.005960 0.977346 55.500000 trnY tRNA trnY trnY 32987 33070 -1 84 LSC 0.000000 0 0 1 300 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_025 igs trnY|trnE trnY-trnE 33071 33129 0 59 LSC 0.000000 0 0 85 246 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 trnE tRNA trnE trnE 33130 33202 -1 73 LSC 0.000000 0 0 144 173 no 0.000000 1 0.000000 0.000000 1.000000 29.500000 IGS_026 igs trnE|trnT trnE-trnT 33203 34186 0 984 LSC 0.003455 8 2 217 262 yes 1.000000 5 1.000000 0.003458 1.000000 61.600000 trnT tRNA trnT trnT 34187 34258 -1 72 LSC 0.000000 0 0 230 190 no 0.000000 1 0.000000 0.000000 1.000000 33.000000 IGS_027 igs trnT|psbD trnT-psbD 34259 35341 0 1083 LSC 0.002401 6 151 300 38 no 1.000000 5 1.000000 0.002565 1.000000 53.800000 psbD gene psbD psbD 35342 36403 1 1062 LSC 0.001507 4 0 65 57 no 0.400000 3 0.666667 0.001507 1.000000 37.900000 psbC gene psbC psbC 36387 37772 1 1386 LSC 0.000289 1 0 115 24 no 0.200000 2 0.500000 0.000289 1.000000 30.800000 IGS_029 igs psbC|trnS psbC-trnS 37773 38001 0 229 LSC 0.002620 1 0 300 144 no 0.000000 2 0.000000 0.002620 1.000000 31.300000 trnS tRNA trnS trnS 38002 38094 -1 93 LSC 0.000000 0 0 204 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_030 igs trnS|psbZ trnS-psbZ 38095 38430 0 336 LSC 0.007738 6 0 297 36 no 0.600000 4 0.750000 0.007738 1.000000 39.200000 psbZ gene psbZ psbZ 38431 38619 1 189 LSC 0.002116 1 0 60 268 no 0.200000 2 0.500000 0.002116 1.000000 28.600000 IGS_031 igs psbZ|trnG psbZ-trnG 38620 39167 0 548 LSC 0.002947 4 8 152 268 yes 1.000000 5 1.000000 0.002956 0.990876 57.700000 trnG tRNA trnG trnG 39168 39238 1 71 LSC 0.000000 0 0 161 197 no 0.000000 1 0.000000 0.000000 1.000000 30.800000 IGS_032 igs trnG|trnM trnG-trnM 39239 39440 0 202 LSC 0.001980 1 5 232 146 no 0.400000 3 0.666667 0.001993 1.000000 41.600000 trnM tRNA trnM trnM 39441 39514 -1 74 LSC 0.000000 0 0 4 72 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_033 igs trnM|rps14 trnM-rps14 39515 39656 0 142 LSC 0.004225 1 0 78 105 no 0.000000 2 0.000000 0.004225 1.000000 27.400000 rps14 gene rps14 rps14 39657 39959 -1 303 LSC 0.001320 1 0 69 300 no 0.200000 2 0.500000 0.001320 1.000000 28.700000 IGS_034 igs rps14|psaB rps14-psaB 39960 40081 0 122 LSC 0.000000 0 0 197 300 no 0.000000 1 0.000000 0.000000 1.000000 33.500000 psaB gene psaB psaB 40082 42286 -1 2205 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_035 igs psaB|psaA psaB-psaA 42287 42311 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 42312 44564 -1 2253 LSC 0.000710 3 0 300 193 no 0.400000 3 0.666667 0.000710 1.000000 45.900000 IGS_036 igs psaA|pafI psaA-pafI 44565 45280 0 716 LSC 0.005307 8 1 300 252 no 0.400000 3 0.666667 0.005312 1.000000 51.500000 pafI gene pafI pafI 45281 47282 -1 2002 LSC 0.001499 7 6 69 300 no 0.600000 4 0.750000 0.001502 0.999500 41.800000 IGS_037 igs pafI|trnS pafI-trnS 47283 47901 0 619 LSC 0.003069 4 25 70 38 no 1.000000 5 1.000000 0.002783 0.998384 53.500000 trnS tRNA trnS trnS 47902 47973 1 72 LSC 0.005556 1 0 26 153 no 0.200000 2 0.500000 0.005556 1.000000 28.700000 IGS_038 igs trnS|rps4 trnS-rps4 47974 48275 0 302 LSC 0.003311 2 0 33 300 no 0.400000 3 0.666667 0.003311 1.000000 31.100000 rps4 gene rps4 rps4 48276 48881 -1 606 LSC 0.000000 0 0 67 44 no 0.000000 1 0.000000 0.000000 1.000000 28.300000 IGS_039 igs rps4|trnT rps4-trnT 48882 49226 0 345 LSC 0.002899 2 9 300 135 no 0.400000 3 0.666667 0.002930 1.000000 42.400000 trnT tRNA trnT trnT 49227 49299 -1 73 LSC 0.000000 0 0 219 62 no 0.000000 1 0.000000 0.000000 1.000000 23.400000 IGS_040 igs trnT|trnL trnT-trnL 49300 50361 0 1062 LSC 0.003013 7 8 292 150 yes 1.000000 5 1.000000 0.003024 1.000000 58.100000 trnL_part1 tRNA trnL trnL 50362 50396 1 35 LSC 0.000000 0 0 279 115 no 0.000000 1 0.000000 0.000000 1.000000 27.400000 trnL_part2 tRNA trnL trnL 50864 50913 1 50 LSC 0.000000 0 0 181 34 no 0.000000 1 0.000000 0.000000 1.000000 21.300000 IGS_043 igs trnL|trnF trnL-trnF 50914 52194 0 1281 LSC 0.037123 72 513 231 275 yes 1.000000 5 1.000000 0.027082 0.839188 81.600000 trnF tRNA trnF trnF 52195 52267 1 73 LSC 0.000000 0 0 19 202 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_044 igs trnF|ndhJ trnF-ndhJ 52268 53000 0 733 LSC 0.002729 5 0 92 180 no 0.600000 4 0.750000 0.002729 1.000000 45.200000 ndhJ gene ndhJ ndhJ 53001 53477 -1 477 LSC 0.001258 1 0 75 29 no 0.000000 2 0.000000 0.001258 1.000000 25.400000 IGS_045 igs ndhJ|ndhK ndhJ-ndhK 53478 53596 0 119 LSC 0.006723 2 3 296 160 no 0.600000 4 0.750000 0.006852 0.983193 49.700000 ndhK gene ndhK ndhK 53597 54277 -1 681 LSC 0.001175 2 0 88 300 no 0.400000 3 0.666667 0.001175 1.000000 40.000000 IGS_046 igs ndhK|ndhC ndhK-ndhC 54278 54319 0 42 LSC 0.000000 0 0 47 300 no 0.000000 1 0.000000 0.000000 1.000000 22.300000 ndhC gene ndhC ndhC 54320 54682 -1 363 LSC 0.000000 0 0 89 300 no 0.000000 1 0.000000 0.000000 1.000000 26.700000 IGS_047 igs ndhC|trnV ndhC-trnV 54683 55415 0 733 LSC 0.001637 3 0 300 284 no 0.200000 2 0.500000 0.001637 1.000000 45.000000 trnV_part2 tRNA trnV trnV 55416 55452 -1 37 LSC 0.000000 0 0 14 247 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 trnV_part1 tRNA trnV trnV 56068 56105 -1 38 LSC 0.000000 0 0 26 56 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_050 igs trnV|trnM trnV-trnM 56106 56270 0 165 LSC 0.002424 1 0 64 89 no 0.200000 2 0.500000 0.002424 1.000000 29.100000 trnM tRNA trnM trnM 56271 56343 1 73 LSC 0.000000 0 0 108 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_051 igs trnM|atpE trnM-atpE 56344 56512 0 169 LSC 0.023669 10 0 181 241 yes 0.400000 3 0.666667 0.023669 1.000000 57.900000 atpE gene atpE atpE 56513 56923 -1 411 LSC 0.002920 3 0 54 2 yes 0.200000 2 0.500000 0.002920 1.000000 27.200000 atpB gene atpB atpB 56920 58416 -1 1497 LSC 0.001202 4 0 144 80 no 0.400000 3 0.666667 0.001202 1.000000 39.400000 IGS_053 igs atpB|rbcL atpB-rbcL 58417 59210 0 794 LSC 0.001513 3 13 160 158 yes 1.000000 5 1.000000 0.001523 0.998741 58.600000 rbcL gene rbcL rbcL 59211 60638 1 1428 LSC 0.001120 3 0 300 178 no 0.400000 3 0.666667 0.001120 1.000000 46.600000 IGS_054 igs rbcL|accD rbcL-accD 60639 61352 0 714 LSC 0.003460 5 6 300 107 no 0.600000 4 0.750000 0.003100 0.998599 47.700000 accD gene accD accD 61353 62948 1 1596 LSC 0.006015 21 24 21 60 yes 1.000000 5 1.000000 0.006090 1.000000 51.200000 IGS_055 igs accD|psaI accD-psaI 62949 63652 0 704 LSC 0.002273 4 31 203 56 no 0.600000 4 0.750000 0.002319 1.000000 47.400000 psaI gene psaI psaI 63653 63757 1 105 LSC 0.003810 1 0 95 144 no 0.200000 2 0.500000 0.003810 1.000000 32.500000 IGS_056 igs psaI|pafII psaI-pafII 63758 64175 0 418 LSC 0.002871 3 2 48 300 no 0.400000 3 0.666667 0.002881 1.000000 35.100000 pafII gene pafII pafII 64176 64730 1 555 LSC 0.000721 1 0 30 63 no 0.200000 2 0.500000 0.000721 1.000000 30.600000 IGS_057 igs pafII|cemA pafII-cemA 64731 65152 0 422 LSC 0.001896 2 0 145 300 no 0.400000 3 0.666667 0.001896 1.000000 41.100000 cemA gene cemA cemA 65153 65842 1 690 LSC 0.000000 0 0 74 41 no 0.000000 1 0.000000 0.000000 1.000000 28.100000 IGS_058 igs cemA|petA cemA-petA 65843 66035 0 193 LSC 0.006218 3 1 300 18 no 0.400000 3 0.666667 0.006242 1.000000 33.000000 petA gene petA petA 66036 66998 1 963 LSC 0.000831 2 0 18 121 no 0.400000 3 0.666667 0.000831 1.000000 34.500000 IGS_059 igs petA|psbJ petA-psbJ 66999 67985 0 987 LSC 0.002026 4 0 82 300 no 0.400000 3 0.666667 0.002026 1.000000 40.100000 psbJ gene psbJ psbJ 67986 68108 -1 123 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_060 igs psbJ|psbL psbJ-psbL 68109 68238 0 130 LSC 0.000000 0 0 300 279 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbL gene psbL psbL 68239 68355 -1 117 LSC 0.000000 0 0 300 162 no 0.000000 1 0.000000 0.000000 1.000000 30.900000 IGS_061 igs psbL|psbF psbL-psbF 68356 68377 0 22 LSC 0.000000 0 0 300 140 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 psbF gene psbF psbF 68378 68497 -1 120 LSC 0.000000 0 0 300 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_062 igs psbF|psbE psbF-psbE 68498 68506 0 9 LSC 0.000000 0 0 300 11 no 0.000000 1 0.000000 NA 1.000000 19.600000 psbE gene psbE psbE 68507 68758 -1 252 LSC 0.003175 2 0 300 74 no 0.400000 3 0.666667 0.003175 1.000000 34.200000 IGS_063 igs psbE|petL psbE-petL 68759 70005 0 1247 LSC 0.003528 11 0 200 38 no 1.000000 5 1.000000 0.003528 1.000000 49.300000 petL gene petL petL 70006 70101 1 96 LSC 0.004167 1 0 300 42 no 0.200000 2 0.500000 0.004167 1.000000 28.800000 IGS_064 igs petL|petG petL-petG 70102 70292 0 191 LSC 0.008377 3 0 57 300 no 0.600000 4 0.750000 0.008377 1.000000 40.000000 petG gene petG petG 70293 70406 1 114 LSC 0.000000 0 0 68 300 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_065 igs petG|trnW petG-trnW 70407 70516 0 110 LSC 0.000000 0 0 182 300 no 0.000000 1 0.000000 0.000000 1.000000 32.400000 trnW tRNA trnW trnW 70517 70590 -1 74 LSC 0.000000 0 0 292 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_066 igs trnW|trnP trnW-trnP 70591 70754 0 164 LSC 0.000000 0 0 300 276 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnP tRNA trnP trnP 70755 70828 -1 74 LSC 0.000000 0 0 300 202 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_067 igs trnP|psaJ trnP-psaJ 70829 71060 0 232 LSC 0.001724 1 0 300 161 no 0.200000 2 0.500000 0.001724 1.000000 35.900000 psaJ gene psaJ psaJ 71061 71195 1 135 LSC 0.000000 0 0 29 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_068 igs psaJ|rpl33 psaJ-rpl33 71196 71612 0 417 LSC 0.004796 5 0 164 276 no 0.400000 3 0.666667 0.004796 1.000000 44.600000 rpl33 gene rpl33 rpl33 71613 71813 1 201 LSC 0.000000 0 0 86 75 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_069 igs rpl33|rps18 rpl33-rps18 71814 71984 0 171 LSC 0.002339 1 0 287 300 no 0.200000 2 0.500000 0.002339 1.000000 39.300000 rps18 gene rps18 rps18 71985 72290 1 306 LSC 0.000000 0 0 95 169 no 0.000000 1 0.000000 0.000000 1.000000 26.000000 IGS_070 igs rps18|rpl20 rps18-rpl20 72291 72554 0 264 LSC 0.002273 1 1 300 300 no 0.400000 3 0.666667 0.002277 1.000000 43.200000 rpl20 gene rpl20 rpl20 72555 72908 -1 354 LSC 0.000000 0 0 94 300 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_071 igs rpl20|rps12 rpl20-rps12 72909 73697 0 789 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 rps12_part1 gene rps12 rps12 73698 73811 -1 114 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_072 igs rps12|clpP1 rps12-clpP1 73812 73990 0 179 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 clpP1 gene clpP1 clpP1 73991 76023 -1 2033 LSC 0.001674 8 6 300 162 no 1.000000 5 1.000000 0.001676 0.999016 56.300000 IGS_073 igs clpP1|psbB clpP1-psbB 76024 76498 0 475 LSC 0.000842 1 0 300 300 no 0.200000 2 0.500000 0.000842 1.000000 41.800000 psbB gene psbB psbB 76499 78019 1 1521 LSC 0.000263 1 0 300 300 no 0.200000 2 0.500000 0.000263 1.000000 43.900000 IGS_074 igs psbB|psbT psbB-psbT 78020 78181 0 162 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbT gene psbT psbT 78182 78289 1 108 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_075 igs psbT|pbf1 psbT-pbf1 78290 78349 0 60 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 pbf1 gene pbf1 pbf1 78350 78481 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_076 igs pbf1|psbH pbf1-psbH 78482 78593 0 112 LSC 0.000000 0 0 300 225 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbH gene psbH psbH 78594 78815 1 222 LSC 0.000000 0 0 300 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_077 igs psbH|petB psbH-petB 78816 78948 0 133 LSC 0.006015 2 0 300 300 no 0.200000 2 0.500000 0.006015 1.000000 42.100000 petB gene petB petB 78949 80387 1 1439 LSC 0.000278 1 1 104 164 no 0.400000 3 0.666667 0.000278 1.000000 40.600000 IGS_078 igs petB|petD petB-petD 80388 80579 0 192 LSC 0.002083 1 0 300 300 no 0.200000 2 0.500000 0.002083 1.000000 39.100000 petD gene petD petD 80580 81798 1 1219 LSC 0.000656 2 0 27 207 no 0.200000 2 0.500000 0.000656 1.000000 31.300000 IGS_079 igs petD|rpoA petD-rpoA 81799 82009 0 211 LSC 0.001896 1 1 300 300 no 0.400000 3 0.666667 0.001898 1.000000 43.300000 rpoA gene rpoA rpoA 82010 83005 -1 996 LSC 0.001004 2 0 3 300 no 0.400000 3 0.666667 0.001004 1.000000 33.400000 IGS_080 igs rpoA|rps11 rpoA-rps11 83006 83072 0 67 LSC 0.000000 0 0 69 300 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 rps11 gene rps11 rps11 83073 83489 -1 417 LSC 0.000000 0 0 136 61 no 0.000000 1 0.000000 0.000000 1.000000 25.800000 IGS_081 igs rps11|rpl36 rps11-rpl36 83490 83616 0 127 LSC 0.003150 1 0 300 300 no 0.200000 2 0.500000 0.003150 1.000000 39.900000 rpl36 gene rpl36 rpl36 83617 83730 -1 114 LSC 0.000000 0 0 65 285 no 0.000000 1 0.000000 0.000000 1.000000 23.600000 IGS_082 igs rpl36|rps8 rpl36-rps8 83731 84201 0 471 LSC 0.002123 2 1 179 66 no 0.600000 4 0.750000 0.002124 1.000000 40.300000 rps8 gene rps8 rps8 84202 84606 -1 405 LSC 0.003457 3 0 57 300 no 0.400000 3 0.666667 0.003457 1.000000 35.200000 IGS_083 igs rps8|rpl14 rps8-rpl14 84607 84763 0 157 LSC 0.000000 0 0 224 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl14 gene rpl14 rpl14 84764 85132 -1 369 LSC 0.000000 0 0 300 207 no 0.000000 1 0.000000 0.000000 1.000000 35.200000 IGS_084 igs rpl14|rpl16 rpl14-rpl16 85133 85249 0 117 LSC 0.000000 0 5 300 90 no 0.000000 2 0.000000 0.000000 1.000000 30.300000 rpl16 gene rpl16 rpl16 85250 86747 -1 1498 LSC 0.001202 4 0 300 107 no 0.600000 4 0.750000 0.001202 1.000000 45.100000 IGS_085 igs rpl16|rps3 rpl16-rps3 86748 86887 0 140 LSC 0.004286 1 0 300 88 no 0.000000 2 0.000000 0.004286 1.000000 28.200000 rps3 gene rps3 rps3 86888 87544 -1 657 LSC 0.000609 1 0 32 11 no 0.200000 2 0.500000 0.000609 1.000000 30.000000 rpl22 gene rpl22 rpl22 87529 88041 -1 513 LSC 0.003119 3 0 300 173 no 0.400000 3 0.666667 0.003119 1.000000 45.800000 IGS_087 igs rpl22|rps19 rpl22-rps19 88042 88106 0 65 LSC 0.000000 0 0 21 108 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 rps19 gene rps19 rps19 88107 88385 -1 279 LSC 0.002867 2 0 86 300 no 0.400000 3 0.666667 0.002867 1.000000 34.900000 IGS_088 igs rps19|rpl2 rps19-rpl2 88386 88453 0 68 IRb 0.000000 0 0 162 300 no 0.000000 1 0.000000 0.000000 1.000000 30.900000 rpl2 gene rpl2 rpl2 88454 89943 -1 1490 IRb 0.000000 0 0 230 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_089 igs rpl2|rpl23 rpl2-rpl23 89944 89961 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 89962 90243 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_090 igs rpl23|trnI rpl23-trnI 90244 90404 0 161 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_091 igs trnI|ycf2 trnI-ycf2 90479 90570 0 92 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 90571 97467 1 6897 IRb 0.000174 3 0 300 300 no 0.400000 3 0.666667 0.000174 1.000000 41.400000 IGS_092 igs ycf2|trnL ycf2-trnL 97468 98032 0 565 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.300000 IGS_093 igs trnL|ndhB trnL-ndhB 98114 98689 0 576 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.500000 ndhB gene ndhB ndhB 98690 100908 -1 2219 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_094 igs ndhB|rps7 ndhB-rps7 100909 101236 0 328 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.300000 rps7 gene rps7 rps7 101237 101704 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_095 igs rps7|rps12 rps7-rps12 101705 101757 0 53 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 101758 102555 -1 798 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_096 igs rps12|trnV rps12-trnV 102556 104214 0 1659 IRb 0.000482 2 60 300 300 no 0.400000 3 0.666667 0.000487 1.000000 51.800000 IGS_097 igs trnV|rrn16 trnV-rrn16 104287 104513 0 227 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 104514 106005 1 1492 IRb 0.000000 0 0 300 78 no 0.000000 1 0.000000 0.000000 1.000000 30.900000 IGS_098 igs rrn16|trnI rrn16-trnI 106006 106299 0 294 IRb 0.001361 1 0 300 300 no 0.200000 2 0.500000 0.001361 1.000000 38.500000 trnI_part1 tRNA trnI trnI 106300 106336 1 37 IRb 0.000000 0 0 215 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 107152 107186 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_101 igs trnI|trnA trnI-trnA 107187 107258 0 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 107259 107296 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 108099 108133 1 35 IRb 0.000000 0 0 300 274 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnA|rrn23 trnA-rrn23 108134 108285 0 152 IRb 0.000000 0 0 300 122 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 rrn23 rRNA rrn23 rrn23 108286 111095 1 2810 IRb 0.000142 1 0 300 300 no 0.200000 2 0.500000 0.000142 1.000000 41.100000 IGS_105 igs rrn23|rrn4.5 rrn23-rrn4.5 111096 111193 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 111194 111296 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs rrn4.5|rrn5 rrn4.5-rrn5 111297 111555 0 259 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 111556 111676 1 121 IRb 0.000000 0 0 300 201 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs rrn5|trnR rrn5-trnR 111677 111932 0 256 IRb 0.001563 1 0 300 300 no 0.200000 2 0.500000 0.001563 1.000000 38.700000 trnR tRNA trnR trnR 111933 112006 1 74 IRb 0.000000 0 0 54 300 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_108 igs trnR|trnN trnR-trnN 112007 112630 0 624 IRb 0.000000 0 0 128 300 no 0.000000 1 0.000000 0.000000 1.000000 34.600000 trnN tRNA trnN trnN 112631 112702 -1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs trnN|ycf1 trnN-ycf1 112703 113030 0 328 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.300000 ycf1 gene ycf1 ycf1 113031 114020 1 990 IRb 0.001212 3 0 300 300 no 0.200000 2 0.500000 0.001212 1.000000 44.700000 ndhF gene ndhF ndhF 113997 116243 -1 2247 SSC 0.003293 17 0 11 26 no 1.000000 5 1.000000 0.003293 1.000000 45.400000 IGS_111 igs ndhF|rpl32 ndhF-rpl32 116244 116899 0 656 SSC 0.004147 6 5 41 225 no 0.600000 4 0.750000 0.004147 0.992378 43.000000 rpl32 gene rpl32 rpl32 116900 117094 1 195 SSC 0.000000 0 0 89 30 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_112 igs rpl32|trnL rpl32-trnL 117095 117878 0 784 SSC 0.008673 15 25 284 84 yes 1.000000 5 1.000000 0.008284 1.000000 60.100000 IGS_113 igs trnL|ccsA trnL-ccsA 117959 118067 0 109 SSC 0.010092 2 10 144 89 no 0.600000 4 0.750000 0.010892 1.000000 48.700000 ccsA gene ccsA ccsA 118068 119039 1 972 SSC 0.003498 8 0 11 7 no 0.600000 4 0.750000 0.003498 1.000000 39.400000 IGS_114 igs ccsA|ndhD ccsA-ndhD 119040 119303 0 264 SSC 0.006818 4 0 134 147 no 0.600000 4 0.750000 0.006818 1.000000 45.000000 ndhD gene ndhD ndhD 119304 120806 -1 1503 SSC 0.001464 5 0 46 300 no 0.600000 4 0.750000 0.001464 1.000000 40.800000 IGS_115 igs ndhD|psaC ndhD-psaC 120807 120954 0 148 SSC 0.000000 0 0 30 237 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 psaC gene psaC psaC 120955 121200 -1 246 SSC 0.001626 1 0 178 186 no 0.200000 2 0.500000 0.001626 1.000000 37.100000 IGS_116 igs psaC|ndhE psaC-ndhE 121201 121448 0 248 SSC 0.001613 1 0 8 93 no 0.200000 2 0.500000 0.001613 1.000000 24.300000 ndhE gene ndhE ndhE 121449 121751 -1 303 SSC 0.003300 2 0 61 82 no 0.200000 3 0.333333 0.003300 1.000000 29.400000 IGS_117 igs ndhE|ndhG ndhE-ndhG 121752 121979 0 228 SSC 0.003509 2 0 59 45 no 0.400000 3 0.666667 0.003509 1.000000 32.300000 ndhG gene ndhG ndhG 121980 122510 -1 531 SSC 0.000753 1 0 96 102 no 0.200000 2 0.500000 0.000753 1.000000 35.100000 IGS_118 igs ndhG|ndhI ndhG-ndhI 122511 122863 0 353 SSC 0.004533 3 0 300 240 no 0.400000 3 0.666667 0.004533 1.000000 45.500000 ndhI gene ndhI ndhI 122864 123364 -1 501 SSC 0.001597 2 0 164 300 no 0.400000 3 0.666667 0.001597 1.000000 44.000000 IGS_119 igs ndhI|ndhA ndhI-ndhA 123365 123444 0 80 SSC 0.000000 0 0 80 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 ndhA gene ndhA ndhA 123445 125675 -1 2231 SSC 0.001793 9 8 160 205 no 1.000000 5 1.000000 0.001796 1.000000 56.000000 IGS_120 igs ndhA|ndhH ndhA-ndhH 125676 125676 0 1 SSC 0.000000 0 0 300 204 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 125677 126858 -1 1182 SSC 0.000508 1 0 300 262 no 0.000000 2 0.000000 0.000508 1.000000 40.300000 IGS_121 igs ndhH|rps15 ndhH-rps15 126859 126961 0 103 SSC 0.000000 0 0 300 159 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 rps15 gene rps15 rps15 126962 127234 -1 273 SSC 0.001465 1 0 300 5 no 0.200000 2 0.500000 0.001465 1.000000 24.000000 IGS_122 igs rps15|ycf1 rps15-ycf1 127235 127637 0 403 SSC 0.009926 9 1 113 49 no 1.000000 5 1.000000 0.009947 0.997519 50.800000 ycf1 gene ycf1 ycf1 127638 133166 -1 5529 SSC 0.007520 98 45 89 300 yes 1.000000 5 1.000000 0.007534 0.995659 50.600000 IGS_123 igs ycf1|trnN ycf1-trnN 133167 133494 0 328 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.300000 trnN tRNA trnN trnN 133495 133566 1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_124 igs trnN|trnR trnN-trnR 133567 134190 0 624 IRa 0.000000 0 0 300 128 no 0.000000 1 0.000000 0.000000 1.000000 34.600000 trnR tRNA trnR trnR 134191 134264 -1 74 IRa 0.000000 0 0 300 54 no 0.000000 1 0.000000 0.000000 1.000000 22.800000 IGS_125 igs trnR|rrn5 trnR-rrn5 134265 134520 0 256 IRa 0.001562 1 0 300 300 no 0.200000 2 0.500000 0.001563 1.000000 38.700000 rrn5 rRNA rrn5 rrn5 134521 134641 -1 121 IRa 0.000000 0 0 201 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs rrn5|rrn4.5 rrn5-rrn4.5 134642 134900 0 259 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 134901 135003 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_127 igs rrn4.5|rrn23 rrn4.5-rrn23 135004 135101 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 135102 137911 -1 2810 IRa 0.000142 1 0 300 300 no 0.200000 2 0.500000 0.000142 1.000000 41.100000 IGS_128 igs rrn23|trnA rrn23-trnA 137912 138063 0 152 IRa 0.000000 0 0 122 300 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 trnA_part2 tRNA trnA trnA 138064 138098 -1 35 IRa 0.000000 0 0 274 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 138901 138938 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_131 igs trnA|trnI trnA-trnI 138939 139010 0 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 139011 139045 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part1 tRNA trnI trnI 139861 139897 -1 37 IRa 0.000000 0 0 300 215 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnI|rrn16 trnI-rrn16 139898 140191 0 294 IRa 0.001361 1 0 300 300 no 0.200000 2 0.500000 0.001361 1.000000 38.500000 rrn16 rRNA rrn16 rrn16 140192 141683 -1 1492 IRa 0.000000 0 0 78 300 no 0.000000 1 0.000000 0.000000 1.000000 30.900000 IGS_135 igs rrn16|trnV rrn16-trnV 141684 141911 0 228 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_136 igs trnV|rps12 trnV-rps12 141984 143641 0 1658 IRa 0.000483 2 60 300 300 no 0.400000 3 0.666667 0.000487 1.000000 51.800000 rps12_part2 gene rps12 rps12 143642 144439 1 798 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_137 igs rps12|rps7 rps12-rps7 144440 144492 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 144493 144960 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_138 igs rps7|ndhB rps7-ndhB 144961 145288 0 328 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.300000 ndhB gene ndhB ndhB 145289 147507 1 2219 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_139 igs ndhB|trnL ndhB-trnL 147508 148083 0 576 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.500000 IGS_140 igs trnL|ycf2 trnL-ycf2 148165 148729 0 565 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.300000 ycf2 gene ycf2 ycf2 148730 155626 -1 6897 IRa 0.000232 4 0 300 300 no 0.600000 4 0.750000 0.000232 1.000000 45.200000 IGS_141 igs ycf2|trnI ycf2-trnI 155627 155718 0 92 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_142 igs trnI|rpl23 trnI-rpl23 155793 155953 0 161 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 155954 156235 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_143 igs rpl23|rpl2 rpl23-rpl2 156236 156253 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 156254 157743 1 1490 IRa 0.000000 0 11 300 66 no 0.000000 2 0.000000 0.000000 1.000000 30.800000 IGS_144 igs rpl2|trnH rpl2-trnH 157744 159 0 225 LSC 0.039773 13 197 300 110 no 1.000000 5 1.000000 0.055465 0.733333 67.500000