primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnH(GUG)-psbA_p1 trnH(GUG)-psbA 1 ATCCACTTGGCTACATCCG CTATCGAAGCTCCAACAAATG 19 21 52.6 42.9 56.9 55.0 0.0 0.0 6.047923 81 402 349-376 1.000000 50.0 trnH(GUG)-psbA_p2 trnH(GUG)-psbA 2 ATCCACTTGGCTACATCCGC CTATCGAAGCTCCAACAAATG 20 21 55.0 42.9 60.2 55.0 0.0 0.0 6.135114 81 402 349-376 1.000000 50.0 trnH(GUG)-psbA_p3 trnH(GUG)-psbA 3 CCACTTGGCTACATCCGC CTATCGAAGCTCCAACAAATG 18 21 61.1 42.9 58.2 55.0 0.0 0.0 6.142473 81 402 347-374 1.000000 50.0 trnH(GUG)-psbA_p4 trnH(GUG)-psbA 4 ATCCACTTGGCTACATCCG TATCGAAGCTCCAACAAATG 19 20 52.6 40.0 56.9 53.7 0.0 0.0 6.380367 81 402 348-375 1.000000 50.0 trnH(GUG)-psbA_p5 trnH(GUG)-psbA 5 ATCCACTTGGCTACATCCGC TATCGAAGCTCCAACAAATG 20 20 55.0 40.0 60.2 53.7 0.0 0.0 6.467559 81 402 348-375 1.000000 50.0 rps16-trnQ(UUG)_p1 rps16-trnQ(UUG) 1 AAGTCGCACGTTGCTTTCTA GAGGTTCGAATCCTTCCGTC 20 20 45.0 55.0 58.1 58.1 8.1 16.9 0.215425 5937 6898 999-1084 1.000000 89.0 rps16-trnQ(UUG)_p2 rps16-trnQ(UUG) 2 AAGTCGCACGTTGCTTTCTA GTCTCGCTATTCGGAGGTTC 20 20 45.0 55.0 58.1 57.9 8.1 0.0 0.261887 5937 6898 1012-1097 1.000000 88.5 rps16-trnQ(UUG)_p3 rps16-trnQ(UUG) 3 AAGTCGCACGTTGCTTTCTA CGGGTTTTGGTCTCGCTATT 20 20 45.0 50.0 58.1 58.3 8.1 0.0 0.405161 5937 6898 1021-1106 1.000000 87.3 rps16-trnQ(UUG)_p4 rps16-trnQ(UUG) 4 AAGTCGCACGTTGCTTTCTA TTTGGTCTCGCTATTCGGAG 20 20 45.0 50.0 58.1 57.4 8.1 0.0 0.718531 5937 6898 1016-1101 1.000000 84.8 rps16-trnQ(UUG)_p5 rps16-trnQ(UUG) 5 AAGTCGCACGTTGCTTTCTA TTCGGAGGTTCGAATCCTTC 20 20 45.0 50.0 58.1 57.3 8.1 16.9 0.806797 5937 6898 1003-1088 1.000000 84.2 psbI-trnS(GCU)_p1 psbI-trnS(GCU) 1 ATCTAATGATCCGGGGCGTA TTCGAATCCCTCTCTTTCCG 20 20 50.0 50.0 58.1 57.0 0.0 0.0 1.028505 8040 8125 146-221 1.000000 78.2 psbI-trnS(GCU)_p2 psbI-trnS(GCU) 2 TATCTAATGATCCGGGGCGT TTCGAATCCCTCTCTTTCCG 20 20 50.0 50.0 58.1 57.0 0.0 0.0 1.028505 8040 8125 147-222 1.000000 78.2 psbI-trnS(GCU)_p3 psbI-trnS(GCU) 3 ATCTAATGATCCGGGGCGTA GGGTTCGAATCCCTCTCTTT 20 20 50.0 50.0 58.1 56.9 0.0 17.2 1.149533 8040 8125 149-224 1.000000 77.1 psbI-trnS(GCU)_p4 psbI-trnS(GCU) 4 TATCTAATGATCCGGGGCGT GGGTTCGAATCCCTCTCTTT 20 20 50.0 50.0 58.1 56.9 0.0 17.2 1.149533 8040 8125 150-225 1.000000 77.1 psbI-trnS(GCU)_p5 psbI-trnS(GCU) 5 ATCTAATGATCCGGGGCGTA GGTTCGAATCCCTCTCTTTCC 20 21 50.0 52.4 58.1 58.1 0.0 0.0 1.159344 8040 8125 148-223 1.000000 77.1 atpF-atpH_p1 atpF-atpH 1 CCAGTAGCCCAAAGAAACGA CCGAGGCAGAGGGAAAAATA 20 20 50.0 50.0 57.8 57.3 0.0 0.0 0.889008 12910 13176 427-439 1.000000 77.3 atpF-atpH_p2 atpF-atpH 2 TTAAATCCGAAACTCCCGGC CCGAGGCAGAGGGAAAAATA 20 20 50.0 50.0 58.3 57.3 0.0 0.0 0.968568 12910 13176 453-465 1.000000 76.4 atpF-atpH_p3 atpF-atpH 3 CCAGTAGCCCAAAGAAACGA GGATTGGTTGTAGCACTAGCA 20 21 50.0 47.6 57.8 58.0 0.0 0.0 1.193016 12910 13176 356-368 1.000000 75.8 atpF-atpH_p4 atpF-atpH 4 CCAGTAGCCCAAAGAAACGA TGGATTGGTTGTAGCACTAGC 20 21 50.0 47.6 57.8 58.0 0.0 0.0 1.193016 12910 13176 357-369 1.000000 75.8 atpF-atpH_p5 atpF-atpH 5 CCAGTAGCCCAAAGAAACGA GCAGAGGGAAAAATACGAGGT 20 21 50.0 47.6 57.8 58.0 0.0 0.0 1.191680 12910 13176 422-434 1.000000 75.0 petN-psbM_p1 petN-psbM 1 TAGTAAGTCTCGCTTGGGCT AGTTCCTACCGCTTTTCTACT 20 21 50.0 42.9 58.2 56.4 0.0 0.0 2.762471 28064 29011 1089-1109 1.000000 63.4 petN-psbM_p2 petN-psbM 2 TAGTAAGTCTCGCTTGGGCT TCATTCTAGTTCCTACCGCT 20 20 50.0 45.0 58.2 55.4 0.0 0.0 2.781070 28064 29011 1096-1116 1.000000 63.3 petN-psbM_p3 petN-psbM 3 TAGTAAGTCTCGCTTGGGCT TCATTCTAGTTCCTACCGCTT 20 21 50.0 42.9 58.2 56.2 0.0 0.0 2.973013 28064 29011 1096-1116 1.000000 61.7 petN-psbM_p4 petN-psbM 4 TAGTAAGTCTCGCTTGGGCT TTCATTCTAGTTCCTACCGCT 20 21 50.0 42.9 58.2 56.2 0.0 0.0 2.973013 28064 29011 1097-1117 1.000000 61.7 petN-psbM_p5 petN-psbM 5 TAGTAAGTCTCGCTTGGGCT AGTTCCTACCGCTTTTCTACTT 20 22 50.0 40.9 58.2 57.1 0.0 0.0 3.037844 28064 29011 1089-1109 1.000000 61.2 trnT(GGU)-psbD_p1 trnT(GGU)-psbD 1 GTGGTAGAGTAACGCCATGG GGACCAGCCTACAAAAACGA 20 20 55.0 50.0 58.1 58.1 7.6 0.0 0.177181 30610 31968 1511-1535 1.000000 83.1 trnT(GGU)-psbD_p2 trnT(GGU)-psbD 2 TCAGTGGTAGAGTAACGCCA GGACCAGCCTACAAAAACGA 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.199336 30610 31968 1514-1538 1.000000 82.9 trnT(GGU)-psbD_p3 trnT(GGU)-psbD 3 GTGGTAGAGTAACGCCATGG ACAAAAACGAAACGGTCCCT 20 20 55.0 45.0 58.1 58.2 7.6 0.0 0.310137 30610 31968 1501-1525 1.000000 82.0 trnT(GGU)-psbD_p4 trnT(GGU)-psbD 4 TCAGTGGTAGAGTAACGCCA ACAAAAACGAAACGGTCCCT 20 20 50.0 45.0 58.1 58.2 0.0 0.0 0.332292 30610 31968 1504-1528 1.000000 81.8 trnT(GGU)-psbD_p5 trnT(GGU)-psbD 5 GGCGTAAGTCATCGGTTCAA GGACCAGCCTACAAAAACGA 20 20 50.0 50.0 58.3 58.1 0.0 0.0 0.395920 30610 31968 1488-1512 1.000000 81.4 trnG(GCC)-trnfM(CAU)_p1 trnG(GCC)-trnfM(CAU) 1 AGAAGATGCGGGTTCGATTC CTTGAGGTCACGGGTTCAAA 20 20 50.0 50.0 58.1 58.0 0.0 4.2 0.096882 35602 35760 225-242 1.000000 85.4 trnG(GCC)-trnfM(CAU)_p2 trnG(GCC)-trnfM(CAU) 2 GAGAAGATGCGGGTTCGATT CTTGAGGTCACGGGTTCAAA 20 20 50.0 50.0 58.1 58.0 0.0 4.2 0.096882 35602 35760 226-243 1.000000 85.4 trnG(GCC)-trnfM(CAU)_p3 trnG(GCC)-trnfM(CAU) 3 AGAAGATGCGGGTTCGATTC GGGTAGAGCAGTTTGGTAGC 20 20 50.0 55.0 58.1 58.0 0.0 0.0 0.084264 35602 35760 261-278 1.000000 84.7 trnG(GCC)-trnfM(CAU)_p4 trnG(GCC)-trnfM(CAU) 4 GAGAAGATGCGGGTTCGATT GGGTAGAGCAGTTTGGTAGC 20 20 50.0 55.0 58.1 58.0 0.0 0.0 0.084264 35602 35760 262-279 1.000000 84.7 trnG(GCC)-trnfM(CAU)_p5 trnG(GCC)-trnfM(CAU) 5 ATGCGGATATGGTCGAATGG GGGTAGAGCAGTTTGGTAGC 20 20 50.0 55.0 57.9 58.0 0.0 0.0 0.124730 35602 35760 302-319 1.000000 83.7 psaA-ycf3_p1 psaA-ycf3 1 GCCCATTCCTCGAAAGAAGT ATTGGTTGAAGATCACGGGG 20 20 50.0 50.0 57.9 57.9 4.1 0.0 0.244113 40892 41674 875-921 1.000000 86.4 psaA-ycf3_p2 psaA-ycf3 2 GAAAAATGACCCGGTTTGGC ATTGGTTGAAGATCACGGGG 20 20 50.0 50.0 58.2 57.9 0.0 0.0 0.338015 40892 41674 893-939 1.000000 85.5 psaA-ycf3_p3 psaA-ycf3 3 TTTTACTTCTGGTTCCGGCG ATTGGTTGAAGATCACGGGG 20 20 50.0 50.0 58.5 57.9 0.0 0.0 0.613689 40892 41674 828-874 1.000000 83.8 psaA-ycf3_p4 psaA-ycf3 4 TTTGGCCCATTCCTCGAAAG ATTGGTTGAAGATCACGGGG 20 20 50.0 50.0 58.5 57.9 0.0 0.0 0.584047 40892 41674 879-925 1.000000 83.7 psaA-ycf3_p5 psaA-ycf3 5 GGCCCATTCCTCGAAAGAAG ATTGGTTGAAGATCACGGGG 20 20 55.0 50.0 58.6 57.9 0.0 0.0 0.745248 40892 41674 876-922 1.000000 82.4 ycf3-trnS(GGA)_p1 ycf3-trnS(GGA) 1 GCTGTCCGTTGGTACTAGTG CCCTCGGTAAACAAAAGCCT 20 20 55.0 50.0 58.0 58.1 5.4 0.0 0.102193 43620 44442 1223-1302 1.000000 85.8 ycf3-trnS(GGA)_p2 ycf3-trnS(GGA) 2 GCTGTCCGTTGGTACTAGTG TTCGATTGGGTATGGCTTCG 20 20 55.0 50.0 58.0 58.1 5.4 0.0 0.059726 43620 44442 1854-1942 1.000000 85.0 ycf3-trnS(GGA)_p3 ycf3-trnS(GGA) 3 GCTGTCCGTTGGTACTAGTG GGGGTCAACAGGTCAAGTTT 20 20 55.0 50.0 58.0 57.9 5.4 0.0 0.075196 43620 44442 1913-2001 1.000000 84.7 ycf3-trnS(GGA)_p4 ycf3-trnS(GGA) 4 AGGTGTAGTGCTTCTTCCCT TTCGATTGGGTATGGCTTCG 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.083391 43620 44442 1877-1965 0.875000 79.4 ycf3-trnS(GGA)_p5 ycf3-trnS(GGA) 5 AGGTGTAGTGCTTCTTCCCT GGGGTCAACAGGTCAAGTTT 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.098860 43620 44442 1936-2024 0.875000 79.1 trnT(UGU)-trnL(UAA)_p1 trnT(UGU)-trnL(UAA) 1 GCGATGCTCTAACCTCTGAG CCGTAGCGTCTACCGATTTC 20 20 55.0 55.0 57.9 58.2 0.0 10.2 0.381189 45859 46538 727-742 1.000000 84.1 trnT(UGU)-trnL(UAA)_p2 trnT(UGU)-trnL(UAA) 2 GGAATCGAACCGATGACCAT CCGTAGCGTCTACCGATTTC 20 20 50.0 55.0 57.8 58.2 15.5 10.2 0.488942 45859 46538 759-774 1.000000 83.0 trnT(UGU)-trnL(UAA)_p3 trnT(UGU)-trnL(UAA) 3 GCGATGCTCTAACCTCTGAG CGTCTACCGATTTCGCCATA 20 20 55.0 50.0 57.9 57.6 0.0 0.0 0.543526 45859 46538 721-736 1.000000 82.9 trnT(UGU)-trnL(UAA)_p4 trnT(UGU)-trnL(UAA) 4 GGAATCGAACCGATGACCAT CGTCTACCGATTTCGCCATA 20 20 50.0 50.0 57.8 57.6 15.5 0.0 0.651279 45859 46538 753-768 1.000000 81.7 trnT(UGU)-trnL(UAA)_p5 trnT(UGU)-trnL(UAA) 5 CTAACCTCTGAGCTAAGCGG CCGTAGCGTCTACCGATTTC 20 20 55.0 55.0 57.5 58.2 5.5 10.2 0.748957 45859 46538 719-734 1.000000 81.3 ndhF_p1 ndhF 1 GAGAATCAGGACAATTCAAGA TGACTCCTTTCAAAAGAAGT 21 20 38.1 35.0 53.3 52.2 0.0 4.1 11.524320 108373 110604 2321-2327 1.000000 43.8 ndhF_p2 ndhF 2 GAGAATCAGGACAATTCAAGA TCCTTTCAAAAGAAGTAAAATCCGA 21 25 38.1 32.0 53.3 57.2 0.0 4.1 11.558869 108373 110604 2317-2323 1.000000 43.8 ndhF_p3 ndhF 3 GAGAATCAGGACAATTCAAGA TTGACTCCTTTCAAAAGAAGT 21 21 38.1 33.3 53.3 53.2 0.0 4.1 11.564875 108373 110604 2322-2328 1.000000 43.8 ndhF_p4 ndhF 4 GAGAATCAGGACAATTCAAGA CTCCTTTCAAAAGAAGTAAAATCCG 21 25 38.1 36.0 53.3 56.9 0.0 4.1 11.836664 108373 110604 2318-2324 1.000000 43.8 ndhF_p5 ndhF 5 GAGAATCAGGACAATTCAAGA CCTTTCAAAAGAAGTAAAATCCGA 21 24 38.1 33.3 53.3 55.9 0.0 4.1 11.865498 108373 110604 2316-2322 1.000000 43.8 ndhF-rpl32_p1 ndhF-rpl32 1 GCCCACATACGACGAAGATT ACCGGCCAGTCTTACTATGA 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.218634 110605 111066 1111-1311 1.000000 87.3 ndhF-rpl32_p2 ndhF-rpl32 2 TCGGAAAAAGAAGAAGCCCC ACCGGCCAGTCTTACTATGA 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.248930 110605 111066 1080-1280 1.000000 87.2 ndhF-rpl32_p3 ndhF-rpl32 3 AAAAGCCCACATACGACGAA ACCGGCCAGTCTTACTATGA 20 20 45.0 50.0 57.8 57.8 0.0 0.0 0.327418 110605 111066 1115-1315 1.000000 86.4 ndhF-rpl32_p4 ndhF-rpl32 4 ACACATCCCAACCAATTCCC ACCGGCCAGTCTTACTATGA 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.217376 110605 111066 1460-1660 0.875000 81.2 ndhF-rpl32_p5 ndhF-rpl32 5 CACATCCCAACCAATTCCCA ACCGGCCAGTCTTACTATGA 20 20 50.0 50.0 58.1 57.8 0.0 0.0 0.218768 110605 111066 1459-1659 0.875000 81.2 rpl32-trnL(UAG)_p1 rpl32-trnL(UAG) 1 TCGGAAAAAGAAGAAGCCCC TCCTAAGAGCAGCGTGTCTA 20 20 50.0 50.0 58.1 57.9 0.0 0.0 0.218640 111253 111954 1317-1517 1.000000 87.6 rpl32-trnL(UAG)_p2 rpl32-trnL(UAG) 2 TCGGAAAAAGAAGAAGCCCC AGCAGCGTGTCTACCAATTT 20 20 50.0 45.0 58.1 57.8 0.0 0.0 0.279367 111253 111954 1310-1510 1.000000 87.1 rpl32-trnL(UAG)_p3 rpl32-trnL(UAG) 3 TCGGAAAAAGAAGAAGCCCC ACTGAAGGGCGGGTACTAAT 20 20 50.0 50.0 58.1 58.1 0.0 0.0 0.218874 111253 111954 1858-2063 1.000000 86.6 rpl32-trnL(UAG)_p4 rpl32-trnL(UAG) 4 TCGGAAAAAGAAGAAGCCCC GATGATATGCCATGCCGCTA 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.122782 111253 111954 1370-1556 0.875000 82.8 rpl32-trnL(UAG)_p5 rpl32-trnL(UAG) 5 CTGGAAGTGGAACGAAAGGT GATGATATGCCATGCCGCTA 20 20 50.0 50.0 57.7 58.0 0.0 0.0 0.284537 111253 111954 1331-1517 0.875000 81.6 ccsA-ndhD_p1 ccsA-ndhD 1 TTGGAGTTGGGACCCAAAAG GGTTGATAATAGTGGGCGCA 20 20 50.0 50.0 57.9 58.0 27.9 10.8 0.118860 113120 113348 1111-1138 1.000000 84.0 ccsA-ndhD_p2 ccsA-ndhD 2 TTGGAGTTGGGACCCAAAAG TGGTTGATAATAGTGGGCGC 20 20 50.0 50.0 57.9 58.0 27.9 0.0 0.118860 113120 113348 1112-1139 1.000000 84.0 ccsA-ndhD_p3 ccsA-ndhD 3 CTAACGAAGCATGGGGATCC GGTTGATAATAGTGGGCGCA 20 20 55.0 50.0 58.1 58.0 1.9 10.8 0.153971 113120 113348 1133-1160 1.000000 83.7 ccsA-ndhD_p4 ccsA-ndhD 4 CTAACGAAGCATGGGGATCC TGGTTGATAATAGTGGGCGC 20 20 55.0 50.0 58.1 58.0 1.9 0.0 0.153971 113120 113348 1134-1161 1.000000 83.7 ccsA-ndhD_p5 ccsA-ndhD 5 ATTAGTACCCGCCCTTCAGT GGTTGATAATAGTGGGCGCA 20 20 50.0 50.0 58.1 58.0 0.0 10.8 0.162718 113120 113348 1498-1525 1.000000 83.2 ndhD_p1 ndhD 1 GAATTAGTGAGAGCCCCGTG TGATACCTTGGGATGGGTGT 20 20 55.0 50.0 58.1 58.0 0.0 0.0 0.078866 113349 114878 1946-1946 0.125000 44.4 ndhD_p2 ndhD 2 GTGAATTAGTGAGAGCCCCG TGATACCTTGGGATGGGTGT 20 20 55.0 50.0 58.1 58.0 0.0 0.0 0.078866 113349 114878 1948-1948 0.125000 44.4 ndhD_p3 ndhD 3 TTGGAGTTGGGACCCAAAAG TGATACCTTGGGATGGGTGT 20 20 50.0 50.0 57.9 58.0 27.9 0.0 0.100845 113349 114878 2230-2230 0.125000 44.2 ndhD_p4 ndhD 4 CTAACGAAGCATGGGGATCC TGATACCTTGGGATGGGTGT 20 20 55.0 50.0 58.1 58.0 1.9 0.0 0.135955 113349 114878 2252-2252 0.125000 43.9 ndhD_p5 ndhD 5 GAATTAGTGAGAGCCCCGTG ATGTACCCAATGTGTCCGTG 20 20 55.0 50.0 58.1 57.9 0.0 0.0 0.166625 113349 114878 1990-1990 0.125000 43.7 rps15-ycf1_p1 rps15-ycf1 1 ACCCTCTATTTTCTTCGTTTTCT TCCGCGATTGAAATTTTGTGA 23 21 34.8 38.1 55.9 57.1 0.0 8.2 7.047774 121133 121543 492-536 1.000000 49.2 rps15-ycf1_p2 rps15-ycf1 2 GACCCTCTATTTTCTTCGTTTTCT TCCGCGATTGAAATTTTGTGA 24 21 37.5 38.1 57.0 57.1 0.0 8.2 6.952507 121133 121543 493-537 1.000000 49.1 rps15-ycf1_p3 rps15-ycf1 3 GACCCTCTATTTTCTTCGTT TCCGCGATTGAAATTTTGTGA 20 21 40.0 38.1 52.6 57.1 0.0 8.2 7.273255 121133 121543 493-537 1.000000 49.1 rps15-ycf1_p4 rps15-ycf1 4 GACCCTCTATTTTCTTCGTTTTCT TCCGCGATTGAAATTTTGTGAA 24 22 37.5 36.4 57.0 57.8 0.0 8.2 7.276807 121133 121543 493-537 1.000000 49.1 rps15-ycf1_p5 rps15-ycf1 5 GACCCTCTATTTTCTTCGTTTTC TCCGCGATTGAAATTTTGTGA 23 21 39.1 38.1 55.6 57.1 0.0 8.2 7.298327 121133 121543 493-537 1.000000 49.1 ycf1_p1 ycf1 1 CTATCCCAGGCCTCTGCTAT TGACGGGGTTGTCAGAAATG 20 20 55.0 50.0 58.1 58.1 0.0 0.0 0.159325 125267 125386 1263-1263 1.000000 84.1 ycf1_p2 ycf1 2 TATCCCAGGCCTCTGCTATC TGACGGGGTTGTCAGAAATG 20 20 55.0 50.0 58.1 58.1 0.0 0.0 0.164947 125267 125386 1262-1262 1.000000 84.1 ycf1_p3 ycf1 3 CTATCCCAGGCCTCTGCTAT GACGGGGTTGTCAGAAATGA 20 20 55.0 50.0 58.1 57.8 0.0 0.0 0.229113 125267 125386 1262-1262 1.000000 83.6 ycf1_p4 ycf1 4 AAATCACTACACGTCTGCCC TGACGGGGTTGTCAGAAATG 20 20 50.0 50.0 57.9 58.1 0.0 0.0 0.203886 125267 125386 866-866 0.750000 72.8 ycf1_p5 ycf1 5 GTACCAAAGCCACATCGTCT TGACGGGGTTGTCAGAAATG 20 20 50.0 50.0 57.9 58.1 0.0 0.0 0.203886 125267 125386 947-947 0.500000 61.3