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trnC-GCA-petN

LSC · 28452-29019 · 568 bp

Back to Clerodendrum

Pi 0.0123

MarkerSeek score 62.20

Primer available yes

Label trnC-GCA-petN

Feature Metadata

label_name: trnC-GCA-petN
feature_type: igs
region: LSC
length_bp: 568
variable_sites: 15
pi: 0.0123
unique_haplotype_count: 5
primer_available: yes
alignment_reliability: 0.98
markerseek_score: 62.20

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
trnC-GCA-petN_p1	TTTCCCCAGTTCAAATCCGG	CACTACGAGCGAAAGGGAAA	50.0	50.0	58.1	57.9	633-682 bp	1.0	84.6
trnC-GCA-petN_p2	TTTCCCCAGTTCAAATCCGG	ACGAGCGAAAGGGAAAATGT	50.0	45.0	58.1	58.1	629-678 bp	1.0	84.3
trnC-GCA-petN_p3	TTTCCCCAGTTCAAATCCGG	TACCATTAAAGCAGCCCACG	50.0	50.0	58.1	58.3	603-652 bp	1.0	83.2
trnC-GCA-petN_p4	GGGGGACTGCAAATCCTTTT	CACTACGAGCGAAAGGGAAA	50.0	50.0	58.4	57.9	651-700 bp	1.0	82.2
trnC-GCA-petN_p5	GGGGGACTGCAAATCCTTTT	ACGAGCGAAAGGGAAAATGT	50.0	45.0	58.4	58.1	647-696 bp	1.0	82.0