primer_id label_name rank fwd_seq rev_seq fwd_len rev_len fwd_gc rev_gc fwd_tm rev_tm fwd_self_any_th rev_self_any_th primer3_penalty target_start target_end amplicon_size cross_species_success_rate primer_score trnC-GCA-petN_p1 trnC-GCA-petN 1 TTTCCCCAGTTCAAATCCGG AGCCCAAGCGAGACTTACTA 20 20 50.0 50.0 58.1 58.2 0.0 0.0 0.233476 9228 9757 583-598 1.000000 83.0 trnC-GCA-petN_p2 trnC-GCA-petN 2 GGGGGACTGCAAATCCTTTT AGCCCAAGCGAGACTTACTA 20 20 50.0 50.0 58.4 58.2 14.7 0.0 0.506839 9228 9757 601-616 1.000000 80.7 trnC-GCA-petN_p3 trnC-GCA-petN 3 TTTCCCCAGTTCAAATCCGG GCCCAAGCGAGACTTACTAT 20 20 50.0 50.0 58.1 57.1 0.0 0.0 0.974912 9228 9757 582-597 1.000000 77.1 trnC-GCA-petN_p4 trnC-GCA-petN 4 TTTCCCCAGTTCAAATCCGG ATTAAAGCAGCCCAAGCGAG 20 20 50.0 50.0 58.1 58.9 0.0 0.0 0.984078 9228 9757 591-606 1.000000 76.9 trnC-GCA-petN_p5 trnC-GCA-petN 5 ATTGTGTATCGTTTTGGCGG AGCCCAAGCGAGACTTACTA 20 20 45.0 50.0 57.1 58.2 0.0 0.0 1.063167 9228 9757 640-655 1.000000 76.2 trnT-UGU-trnL-UAA_p1 trnT-UGU-trnL-UAA 1 GCGATGCTCTAACCTCTGAG ACCAATTTCGCCATATCCCC 20 20 55.0 50.0 57.9 58.0 0.0 0.0 0.137364 45871 46408 571-597 1.000000 85.2 trnT-UGU-trnL-UAA_p2 trnT-UGU-trnL-UAA 2 GCGATGCTCTAACCTCTGAG TAGCGTCTACCAATTTCGCC 20 20 55.0 50.0 57.9 58.1 0.0 0.0 0.202173 45871 46408 579-605 1.000000 84.7 trnT-UGU-trnL-UAA_p3 trnT-UGU-trnL-UAA 3 GGAATCGAACCGATGACCAT ACCAATTTCGCCATATCCCC 20 20 50.0 50.0 57.8 58.0 15.5 0.0 0.245117 45871 46408 603-629 1.000000 84.1 trnT-UGU-trnL-UAA_p4 trnT-UGU-trnL-UAA 4 GGAATCGAACCGATGACCAT TAGCGTCTACCAATTTCGCC 20 20 50.0 50.0 57.8 58.1 15.5 0.0 0.309926 45871 46408 611-637 1.000000 83.5 trnT-UGU-trnL-UAA_p5 trnT-UGU-trnL-UAA 5 GCGATGCTCTAACCTCTGAG AGTCCGTAGCGTCTACCAAT 20 20 55.0 50.0 57.9 58.2 0.0 10.2 0.372548 45871 46408 585-611 1.000000 83.3 ndhC-trnV-UAC_p1 ndhC-trnV-UAC 1 CCCTTTGCTAATCGGAGCTA CCGAGAAAGTCTACGGTTCG 20 20 50.0 55.0 57.1 58.1 0.0 0.0 1.018220 49717 50863 1273-1294 1.000000 75.1 ndhC-trnV-UAC_p2 ndhC-trnV-UAC 2 CCCTTTGCTAATCGGAGCTAA CCGAGAAAGTCTACGGTTCG 21 20 47.6 55.0 57.8 58.1 0.0 0.0 1.301537 49717 50863 1273-1294 1.000000 72.8 ndhC-trnV-UAC_p3 ndhC-trnV-UAC 3 CTCCGGCCCTTTGCTAATC CCGAGAAAGTCTACGGTTCG 19 20 57.9 55.0 58.3 58.1 0.0 0.0 1.399630 49717 50863 1279-1300 1.000000 72.0 ndhC-trnV-UAC_p4 ndhC-trnV-UAC 4 GGCCCTTTGCTAATCGGAG CCGAGAAAGTCTACGGTTCG 19 20 57.9 55.0 58.3 58.1 0.0 0.0 1.399630 49717 50863 1275-1296 1.000000 72.0 ndhC-trnV-UAC_p5 ndhC-trnV-UAC 5 TTCTCCGGCCCTTTGCTAAT CCGAGAAAGTCTACGGTTCG 20 20 50.0 55.0 59.4 58.1 0.0 0.0 1.483809 49717 50863 1281-1302 1.000000 71.3 petA-psbJ_p1 petA-psbJ 1 ACGTGTACAAGGCCTTTTGT ATTCCGGATTGGGTTCATCC 20 20 45.0 50.0 58.0 57.6 17.6 4.1 0.411974 62533 63324 904-935 1.000000 81.7 petA-psbJ_p2 petA-psbJ 2 GGCCTTTTGTTCTTCTTCGC ATTCCGGATTGGGTTCATCC 20 20 50.0 50.0 57.9 57.6 0.0 4.1 0.416851 62533 63324 894-925 1.000000 81.7 petA-psbJ_p3 petA-psbJ 3 ACGTGTACAAGGCCTTTTGT TGTGATCGGTTTAGTAGGCG 20 20 45.0 50.0 58.0 57.4 17.6 0.0 0.619192 62533 63324 942-973 1.000000 79.9 petA-psbJ_p4 petA-psbJ 4 GGCCTTTTGTTCTTCTTCGC TGTGATCGGTTTAGTAGGCG 20 20 50.0 50.0 57.9 57.4 0.0 0.0 0.624069 62533 63324 932-963 1.000000 79.9 petA-psbJ_p5 petA-psbJ 5 ACGTGTACAAGGCCTTTTGT GTGATCGGTTTAGTAGGCGT 20 20 45.0 50.0 58.0 57.4 17.6 0.0 0.620943 62533 63324 941-972 1.000000 79.8 ndhF_p1 ndhF 1 CTAGCACTGGGTAGACCTCA GAGGTAAGATCCGGTGAATCG 20 21 55.0 52.4 57.9 58.0 0.0 0.0 1.160001 108708 110942 2606-2606 0.500000 51.2 ndhF_p2 ndhF 2 TCGTTGTGGTCGGACTCTAT GAGGTAAGATCCGGTGAATCG 20 21 50.0 52.4 58.2 58.0 8.2 0.0 1.184325 108708 110942 2794-2794 0.500000 51.0 ndhF_p3 ndhF 3 ATCAATTCGGTCGTTGTGGT GAGGTAAGATCCGGTGAATCG 20 21 45.0 52.4 57.8 58.0 0.0 0.0 1.193516 108708 110942 2804-2804 0.500000 50.9 ndhF_p4 ndhF 4 TCTCTTCCTTCTCCGAGCTC GAGGTAAGATCCGGTGAATCG 20 21 55.0 52.4 58.2 58.0 2.7 0.0 1.256922 108708 110942 2736-2736 0.500000 50.4 ndhF_p5 ndhF 5 CTAGCACTGGGTAGACCTCA AGGTAAGATCCGGTGAATCG 20 20 55.0 50.0 57.9 56.8 0.0 0.0 1.325374 108708 110942 2605-2605 0.500000 49.9 ndhF-rpl32_p1 ndhF-rpl32 1 GTTGCCGTCGGAAAAAGAAG CACCACCACAATGTGAGTGA 20 20 50.0 50.0 58.0 58.0 17.5 25.6 0.066479 110943 111990 1554-1556 0.500000 60.0 ndhF-rpl32_p2 ndhF-rpl32 2 TGCCGTCGGAAAAAGAAGAA CACCACCACAATGTGAGTGA 20 20 45.0 50.0 58.0 58.0 17.5 25.6 0.077769 110943 111990 1552-1554 0.500000 59.9 ndhF-rpl32_p3 ndhF-rpl32 3 TTGCCGTCGGAAAAAGAAGA CACCACCACAATGTGAGTGA 20 20 45.0 50.0 58.0 58.0 17.5 25.6 0.077769 110943 111990 1553-1555 0.500000 59.9 ndhF-rpl32_p4 ndhF-rpl32 4 GTTGCCGTCGGAAAAAGAAG AATAAGACTCCCCACCACCA 20 20 50.0 50.0 58.0 57.9 17.5 0.0 0.086161 110943 111990 1566-1568 0.500000 59.9 ndhF-rpl32_p5 ndhF-rpl32 5 TGCCGTCGGAAAAAGAAGAA AATAAGACTCCCCACCACCA 20 20 45.0 50.0 58.0 57.9 17.5 0.0 0.097450 110943 111990 1564-1566 0.500000 59.8 rpl32-trnL-UAG_p1 rpl32-trnL-UAG 1 AAGGAAAGGATATTGGGCGG AGCGTGTCTACCGATTTCAC 20 20 50.0 50.0 57.6 58.0 0.0 0.0 0.372803 112156 113014 991-991 0.500000 57.6 rpl32-trnL-UAG_p2 rpl32-trnL-UAG 2 AAGGAAAGGATATTGGGCGG CAGCGTGTCTACCGATTTCA 20 20 50.0 50.0 57.6 58.0 0.0 0.0 0.374173 112156 113014 992-992 0.500000 57.6 rpl32-trnL-UAG_p3 rpl32-trnL-UAG 3 CGGCGTTAAAAGCTTTGTCA AGCGTGTCTACCGATTTCAC 20 20 45.0 50.0 57.6 58.0 13.5 0.0 0.400763 112156 113014 974-974 0.500000 57.4 rpl32-trnL-UAG_p4 rpl32-trnL-UAG 4 CGGCGTTAAAAGCTTTGTCA CAGCGTGTCTACCGATTTCA 20 20 45.0 50.0 57.6 58.0 13.5 0.0 0.402133 112156 113014 975-975 0.500000 57.4 rpl32-trnL-UAG_p5 rpl32-trnL-UAG 5 AAGGAAAGGATATTGGGCGG GAAGTAGCAAAGCCTTGGGT 20 20 50.0 50.0 57.6 58.1 0.0 0.0 0.453915 112156 113014 1527-1528 0.500000 56.9 trnL-UAG-ccsA_p1 trnL-UAG-ccsA 1 GTGAAATCGGTAGACACGCT GAAGTAGCAAAGCCTTGGGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.096773 113095 113236 556-557 0.500000 59.8 trnL-UAG-ccsA_p2 trnL-UAG-ccsA 2 TGAAATCGGTAGACACGCTG GAAGTAGCAAAGCCTTGGGT 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.098143 113095 113236 555-556 0.500000 59.8 trnL-UAG-ccsA_p3 trnL-UAG-ccsA 3 GTGAAATCGGTAGACACGCT TGATCCACAAAGAAGAGCCG 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.106972 113095 113236 674-675 0.500000 59.6 trnL-UAG-ccsA_p4 trnL-UAG-ccsA 4 TGAAATCGGTAGACACGCTG TGATCCACAAAGAAGAGCCG 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.108342 113095 113236 673-674 0.500000 59.6 trnL-UAG-ccsA_p5 trnL-UAG-ccsA 5 TCACTCACATTGTGGTGGTG GAAGTAGCAAAGCCTTGGGT 20 20 50.0 50.0 58.0 58.1 25.1 0.0 0.123008 113095 113236 1201-1202 0.500000 59.5 ccsA_p1 ccsA 1 GTGAAATCGGTAGACACGCT AGAACCGCGTGAATCACTAC 20 20 50.0 50.0 58.0 58.0 0.0 11.9 0.015661 113237 114205 1296-1297 0.500000 60.3 ccsA_p2 ccsA 2 TGAAATCGGTAGACACGCTG AGAACCGCGTGAATCACTAC 20 20 50.0 50.0 58.0 58.0 0.0 11.9 0.017031 113237 114205 1295-1296 0.500000 60.3 ccsA_p3 ccsA 3 GTGAAATCGGTAGACACGCT GTTTTTGATTCTGGACCGCG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.044083 113237 114205 1571-1572 0.500000 60.0 ccsA_p4 ccsA 4 TGAAATCGGTAGACACGCTG GTTTTTGATTCTGGACCGCG 20 20 50.0 50.0 58.0 58.0 0.0 0.0 0.045454 113237 114205 1570-1571 0.500000 60.0 ccsA_p5 ccsA 5 GTGAAATCGGTAGACACGCT TAGCTTTTCGATGGCTTCCC 20 20 50.0 50.0 58.0 58.0 0.0 11.4 0.046217 113237 114205 1794-1795 0.500000 59.9 ndhD_p1 ndhD 1 GTAGTGATTCACGCGGTTCT TCTGCTCCAAGAACAGAGGA 20 20 50.0 50.0 58.0 58.0 12.5 0.0 0.023287 114452 115972 1899-1899 0.500000 60.0 ndhD_p2 ndhD 2 AGCAAATTCCGCAATTGTGG TCTGCTCCAAGAACAGAGGA 20 20 45.0 50.0 57.9 58.0 28.7 0.0 0.098623 114452 115972 2115-2115 0.500000 59.4 ndhD_p3 ndhD 3 GTAGTGATTCACGCGGTTCT AAAACTCGGGGAACTCATCG 20 20 50.0 50.0 58.0 57.9 12.5 0.0 0.102592 114452 115972 2121-2121 0.500000 59.3 ndhD_p4 ndhD 4 GTAGTGATTCACGCGGTTCT TGATACCTTGGGACGGATGT 20 20 50.0 50.0 58.0 58.1 12.5 0.0 0.133701 114452 115972 1937-1937 0.500000 59.1 ndhD_p5 ndhD 5 GTAGTGATTCACGCGGTTCT CTCGGGGAACTCATCGATTC 20 20 50.0 55.0 58.0 57.9 12.5 0.0 0.149365 114452 115972 2117-2117 0.500000 59.0 psaC_p1 psaC 1 CTCCCGCCGTGTACAAAATA AAAACTCGGGGAACTCATCG 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.107699 116074 116319 987-987 0.500000 59.3 psaC_p2 psaC 2 TCTTTCCTCCCCACATGGAT AAAACTCGGGGAACTCATCG 20 20 50.0 50.0 58.0 57.9 0.0 0.0 0.109141 116074 116319 942-942 0.500000 59.3 psaC_p3 psaC 3 CTCCCGCCGTGTACAAAATA CTCGGGGAACTCATCGATTC 20 20 50.0 55.0 58.0 57.9 0.0 0.0 0.154472 116074 116319 983-983 0.500000 58.9 psaC_p4 psaC 4 TCTTTCCTCCCCACATGGAT CTCGGGGAACTCATCGATTC 20 20 50.0 55.0 58.0 57.9 0.0 0.0 0.155914 116074 116319 938-938 0.500000 58.9 psaC_p5 psaC 5 TTCCAAAGCCACAGGATACG AAAACTCGGGGAACTCATCG 20 20 50.0 50.0 57.9 57.9 0.0 0.0 0.202712 116074 116319 1097-1097 0.500000 58.6 psaC-ndhE_p1 psaC-ndhE 1 TCCTCTGTTCTTGGAGCAGA TAATCGGCGCAATTGCTGTA 20 20 50.0 45.0 58.0 58.3 12.1 26.9 0.357634 116320 116555 925-930 0.500000 57.7 psaC-ndhE_p2 psaC-ndhE 2 TCCTCTGTTCTTGGAGCAGA TGGACTACAAAAGCAAGCCA 20 20 50.0 45.0 58.0 57.6 12.1 0.0 0.372121 116320 116555 1052-1057 0.500000 57.6 psaC-ndhE_p3 psaC-ndhE 3 ACATCCGTCCCAAGGTATCA TAATCGGCGCAATTGCTGTA 20 20 50.0 45.0 58.1 58.3 0.0 26.9 0.468048 116320 116555 887-892 0.500000 56.9 psaC-ndhE_p4 psaC-ndhE 4 TCCTCTGTTCTTGGAGCAGA CTGAAGCCGCTATTGGACTC 20 20 50.0 55.0 58.0 58.4 12.1 0.0 0.439101 116320 116555 468-468 0.500000 56.7 psaC-ndhE_p5 psaC-ndhE 5 TCCTCTGTTCTTGGAGCAGA CCGCTATTGGACTCGCTATT 20 20 50.0 50.0 58.0 57.6 12.1 0.0 0.455995 116320 116555 462-462 0.500000 56.5 ndhG_p1 ndhG 1 CGATGAGTTCCCCGAGTTTT TTGATCACATCCGAGCGTTT 20 20 50.0 45.0 57.9 57.9 0.0 0.0 0.188068 117078 117608 1904-1910 0.500000 59.0 ndhG_p2 ndhG 2 GAATCGATGAGTTCCCCGAG TTGATCACATCCGAGCGTTT 20 20 55.0 45.0 57.9 57.9 0.0 0.0 0.234841 117078 117608 1908-1914 0.500000 58.6 ndhG_p3 ndhG 3 CGATGAGTTCCCCGAGTTTT TCAAATTGCTTTGGGTCGGT 20 20 50.0 45.0 57.9 58.3 0.0 0.0 0.396256 117078 117608 1629-1635 0.500000 57.4 ndhG_p4 ndhG 4 CGATGAGTTCCCCGAGTTTT AATTGATCACATCCGAGCGT 20 20 50.0 45.0 57.9 57.7 0.0 0.0 0.410687 117078 117608 1906-1912 0.500000 57.2 ndhG_p5 ndhG 5 CGATGAGTTCCCCGAGTTTT ATTGATCACATCCGAGCGTT 20 20 50.0 45.0 57.9 57.7 0.0 0.0 0.410687 117078 117608 1905-1911 0.500000 57.2 ndhA_p1 ndhA 1 TGACCAATATACCTTGCGGC GGCAAAAAGAGGGGGATTCA 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.101015 118522 120671 2721-2750 0.500000 59.7 ndhA_p2 ndhA 2 TGACCAATATACCTTGCGGC TGGCAAAAAGAGGGGGATTC 20 20 50.0 50.0 58.0 58.1 0.0 0.0 0.101015 118522 120671 2722-2751 0.500000 59.7 ndhA_p3 ndhA 3 TGACCAATATACCTTGCGGC TGGGAAGTCCAATGGCAAAA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.132307 118522 120671 2734-2763 0.500000 59.4 ndhA_p4 ndhA 4 TGACCAATATACCTTGCGGC TTAGAAATCCGCCGCTTTGA 20 20 50.0 45.0 58.0 57.9 0.0 0.0 0.140276 118522 120671 2605-2634 0.500000 59.4 ndhA_p5 ndhA 5 AAACGCTCGGATGTGATCAA GGCAAAAAGAGGGGGATTCA 20 20 45.0 50.0 57.9 58.1 0.0 0.0 0.156115 118522 120671 2808-2837 0.500000 59.2 ndhH_p1 ndhH 1 CGTTGTTGTATACCCGCAGA TCAACGGTTGCTGGCTTATT 20 20 50.0 45.0 58.0 58.1 0.0 15.9 0.096665 120673 121854 1550-1556 0.500000 59.7 ndhH_p2 ndhH 2 TGCGTATTCAGGGCCAATAC TCAACGGTTGCTGGCTTATT 20 20 50.0 45.0 58.0 58.1 6.2 15.9 0.133920 120673 121854 1569-1575 0.500000 59.4 ndhH_p3 ndhH 3 CGTTGTTGTATACCCGCAGA TCTTCTGTCCGGCATCTGTA 20 20 50.0 50.0 58.0 58.2 0.0 0.0 0.153623 120673 121854 2108-2117 0.500000 59.3 ndhH_p4 ndhH 4 CCTGACATAAGAAGGCCGAC TCAACGGTTGCTGGCTTATT 20 20 55.0 45.0 58.1 58.1 0.0 15.9 0.154388 120673 121854 1814-1820 0.500000 59.2 ndhH_p5 ndhH 5 GACATAAGAAGGCCGACAGG TCAACGGTTGCTGGCTTATT 20 20 55.0 45.0 58.1 58.1 0.0 15.9 0.154388 120673 121854 1811-1817 0.500000 59.2 rps15_p1 rps15 1 TCCCAACGCGTTACATAAGG AATAATGGGAGCCGCTTGAG 20 20 50.0 50.0 58.0 58.0 26.1 0.0 0.040065 121952 122230 1062-1071 0.500000 60.5 rps15_p2 rps15 2 AACACCATGCATTGATGGGT AATAATGGGAGCCGCTTGAG 20 20 45.0 50.0 58.1 58.0 8.9 0.0 0.085751 121952 122230 925-934 0.500000 60.3 rps15_p3 rps15 3 TCCCAACGCGTTACATAAGG TTTCTTCTGTCCGGCATCTG 20 20 50.0 50.0 58.0 57.9 26.1 0.0 0.112078 121952 122230 957-966 0.500000 60.0 rps15_p4 rps15 4 GCAGTGACTCCTCCAATACG AATAATGGGAGCCGCTTGAG 20 20 55.0 50.0 58.1 58.0 0.0 0.0 0.099233 121952 122230 1344-1353 0.500000 59.9 rps15_p5 rps15 5 AGGAGTCTGTGCCCCAATAT AATAATGGGAGCCGCTTGAG 20 20 50.0 50.0 58.1 58.0 0.0 0.0 0.128265 121952 122230 1240-1249 0.500000 59.7 rps15-ycf1_p1 rps15-ycf1 1 TCCCAACGCGTTACATAAGG AATAATGGGAGCCGCTTGAG 20 20 50.0 50.0 58.0 58.0 26.1 0.0 0.040065 122231 122663 1062-1071 0.500000 60.5 rps15-ycf1_p2 rps15-ycf1 2 AACACCATGCATTGATGGGT AATAATGGGAGCCGCTTGAG 20 20 45.0 50.0 58.1 58.0 8.9 0.0 0.085751 122231 122663 925-934 0.500000 60.3 rps15-ycf1_p3 rps15-ycf1 3 CCGCAGACCTCTCTGAGATA AATAATGGGAGCCGCTTGAG 20 20 55.0 50.0 58.0 58.0 8.0 0.0 0.052863 122231 122663 648-651 0.500000 60.1 rps15-ycf1_p4 rps15-ycf1 4 AATAAGCCAGCAACCGTTGA AATAATGGGAGCCGCTTGAG 20 20 45.0 50.0 58.1 58.0 15.6 0.0 0.122841 122231 122663 685-688 0.500000 59.5 rps15-ycf1_p5 rps15-ycf1 5 CCAGAATTTTCCGCAGACCT AATAATGGGAGCCGCTTGAG 20 20 50.0 50.0 58.2 58.0 0.0 0.0 0.200743 122231 122663 658-661 0.444444 56.5 ycf1_p1 ycf1 1 TTCGGAGTCGATGTGAATCG CCCACAAAAATGGAGAAATGGA 20 22 50.0 40.9 57.8 57.1 1.8 0.0 3.077163 123768 123887 609-609 0.500000 35.8 ycf1_p2 ycf1 2 TTCGGAGTCGATGTGAATCG TCCCACAAAAATGGAGAAATGG 20 22 50.0 40.9 57.8 57.1 1.8 0.0 3.077163 123768 123887 610-610 0.500000 35.8 ycf1_p3 ycf1 3 TTCGGAGTCGATGTGAATCG TCAATCAATCCCATACGTCTCA 20 22 50.0 40.9 57.8 57.0 1.8 0.0 3.208365 123768 123887 586-586 0.500000 34.7 ycf1_p4 ycf1 4 TTCGGAGTCGATGTGAATCG TGGAATCAATCAATCCCATACGT 20 23 50.0 39.1 57.8 58.0 1.8 0.0 3.236403 123768 123887 591-591 0.500000 34.5 ycf1_p5 ycf1 5 TTCGGAGTCGATGTGAATCG TGGAAAAACTGGTTAAGAGGTGA 20 23 50.0 39.1 57.8 57.9 1.8 0.0 3.307566 123768 123887 674-674 0.500000 33.9