Hotspot

trnP-UGG-psaJ

LSC · 67762-68137 · 376 bp

Back to Chamaedorea

Pi 0.0172

MarkerSeek score 63.90

Primer available yes

Label trnP-UGG-psaJ

Feature Metadata

label_name: trnP-UGG-psaJ
feature_type: igs
region: LSC
length_bp: 376
variable_sites: 15
pi: 0.0172
unique_haplotype_count: 5
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 63.90

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
trnP-UGG-psaJ_p1	ACCCGTGACATTTTGTACCC	CCTGCTAAAGACCCAAACCA	50.0	50.0	58.1	57.7	493-534 bp	1.0	83.2
trnP-UGG-psaJ_p2	CCCGTGACATTTTGTACCCA	CCTGCTAAAGACCCAAACCA	50.0	50.0	58.1	57.7	492-533 bp	1.0	83.2
trnP-UGG-psaJ_p3	ACCCGTGACATTTTGTACCC	ACCTGCTAAAGACCCAAACC	50.0	50.0	58.1	57.7	494-535 bp	1.0	83.2
trnP-UGG-psaJ_p4	CCCGTGACATTTTGTACCCA	ACCTGCTAAAGACCCAAACC	50.0	50.0	58.1	57.7	493-534 bp	1.0	83.2
trnP-UGG-psaJ_p5	ACAGGATTTGAACCCGTGAC	CCTGCTAAAGACCCAAACCA	50.0	50.0	58.1	57.7	504-545 bp	1.0	83.1