feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GTG tRNA trnH-GTG trnH-GTG 10 83 -1 74 LSC 0.000000 0 0 300 63 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_001 igs trnH-GTG|psbA trnH-GTG-psbA 84 503 0 420 LSC 0.004560 5 14 300 300 yes 0.666667 10 0.800000 0.004591 0.978571 55.500000 psbA gene psbA psbA 504 1565 -1 1062 LSC 0.000942 3 0 300 300 no 0.083333 4 0.250000 0.000942 1.000000 42.300000 IGS_002 igs psbA|matK psbA-matK 1566 2158 0 593 LSC 0.000281 1 1 164 300 no 0.166667 3 0.666667 0.000281 1.000000 40.800000 matK gene matK matK 2159 3673 -1 1515 LSC 0.001550 10 0 300 300 no 0.666667 9 0.888889 0.001550 1.000000 54.000000 IGS_003 igs matK|rps16 matK-rps16 3674 5329 0 1656 LSC 0.002849 20 35 300 299 yes 1.000000 12 1.000000 0.002658 0.984903 63.300000 rps16 gene rps16 rps16 5330 6461 -1 1132 LSC 0.000950 5 0 300 221 no 0.333333 6 0.666667 0.000950 1.000000 47.200000 IGS_004 igs rps16|trnQ-TTG rps16-trnQ-TTG 6462 7900 0 1439 LSC 0.000844 6 982 300 165 yes 0.833333 11 0.909091 0.000733 0.984712 55.500000 trnQ-TTG tRNA trnQ-TTG trnQ-TTG 7901 7972 -1 72 LSC 0.000000 0 0 300 93 no 0.000000 1 0.000000 0.000000 1.000000 25.700000 IGS_005 igs trnQ-TTG|psbK trnQ-TTG-psbK 7973 8424 0 452 LSC 0.007375 18 18 300 300 yes 0.500000 8 0.750000 0.007422 1.000000 59.200000 psbK gene psbK psbK 8425 8610 1 186 LSC 0.000000 0 0 300 213 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_006 igs psbK|psbI psbK-psbI 8611 9021 0 411 LSC 0.001954 4 1 300 300 no 0.416667 6 0.833333 0.001954 1.000000 46.300000 psbI gene psbI psbI 9022 9132 1 111 LSC 0.000000 0 0 197 300 no 0.000000 1 0.000000 0.000000 1.000000 33.500000 IGS_007 igs psbI|trnS-GCT psbI-trnS-GCT 9133 9276 0 144 LSC 0.002331 2 4 300 300 no 0.333333 6 0.666667 0.002370 0.979167 45.400000 trnS-GCT tRNA trnS-GCT trnS-GCT 9277 9364 -1 88 LSC 0.001894 1 0 300 279 no 0.083333 2 0.500000 0.001894 1.000000 37.600000 IGS_008 igs trnS-GCT|trnR-TCT trnS-GCT-trnR-TCT 9365 11415 0 2051 LSC 0.009769 54 161 300 300 yes 1.000000 12 1.000000 0.004953 0.972696 70.300000 trnR-TCT tRNA trnR-TCT trnR-TCT 11416 11487 1 72 LSC 0.000000 0 0 218 236 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_009 igs trnR-TCT|atpA trnR-TCT-atpA 11488 11705 0 218 LSC 0.000765 1 0 290 18 no 0.083333 2 0.500000 0.000765 1.000000 22.600000 atpA gene atpA atpA 11706 13229 -1 1524 LSC 0.001213 7 0 300 300 no 0.333333 6 0.666667 0.001213 1.000000 47.300000 IGS_010 igs atpA|atpF atpA-atpF 13230 13289 0 60 LSC 0.000000 0 1 11 300 no 0.000000 2 0.000000 0.000000 1.000000 21.500000 atpF gene atpF atpF 13290 14593 -1 1304 LSC 0.001127 8 5 71 139 no 0.666667 9 0.888889 0.001128 1.000000 44.600000 IGS_011 igs atpF|atpH atpF-atpH 14594 15111 0 518 LSC 0.001872 5 1 300 300 no 0.333333 6 0.666667 0.001875 1.000000 46.800000 atpH gene atpH atpH 15112 15357 -1 246 LSC 0.000678 1 0 300 300 no 0.083333 2 0.500000 0.000678 1.000000 36.100000 IGS_012 igs atpH|atpI atpH-atpI 15358 16566 0 1209 LSC 0.003438 16 41 300 300 yes 0.750000 10 0.900000 0.002350 0.994210 61.000000 atpI gene atpI atpI 16567 17313 -1 747 LSC 0.000669 3 0 93 172 no 0.250000 4 0.750000 0.000669 1.000000 37.500000 IGS_013 igs atpI|rps2 atpI-rps2 17314 17512 0 199 LSC 0.001523 1 0 300 300 no 0.000000 2 0.000000 0.001523 1.000000 35.100000 rps2 gene rps2 rps2 17513 18238 -1 726 LSC 0.000230 1 0 26 300 no 0.083333 2 0.500000 0.000230 1.000000 28.800000 IGS_014 igs rps2|rpoC2 rps2-rpoC2 18239 18465 0 227 LSC 0.001502 2 8 300 300 no 0.333333 6 0.666667 0.001514 0.973568 45.000000 rpoC2 gene rpoC2 rpoC2 18466 22650 -1 4185 LSC 0.000670 13 0 300 114 no 0.666667 10 0.800000 0.000670 1.000000 41.800000 IGS_015 igs rpoC2|rpoC1 rpoC2-rpoC1 22651 22815 0 165 LSC 0.003214 1 0 300 300 no 0.000000 2 0.000000 0.003214 1.000000 36.000000 rpoC1 gene rpoC1 rpoC1 22816 25686 -1 2871 LSC 0.001163 14 2 50 300 no 0.750000 10 0.900000 0.001077 0.999652 41.200000 IGS_016 igs rpoC1|rpoB rpoC1-rpoB 25687 25712 0 26 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 25713 28925 -1 3213 LSC 0.000424 6 0 300 173 no 0.416667 7 0.714286 0.000424 1.000000 42.800000 IGS_017 igs rpoB|trnC-GCA rpoB-trnC-GCA 28926 30096 0 1171 LSC 0.001826 9 25 300 190 no 0.500000 8 0.750000 0.001849 0.992314 52.700000 trnC-GCA tRNA trnC-GCA trnC-GCA 30097 30167 1 71 LSC 0.000000 0 0 300 119 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_018 igs trnC-GCA|petN trnC-GCA-petN 30168 31042 0 875 LSC 0.000918 4 0 300 300 no 0.250000 5 0.600000 0.000918 1.000000 45.700000 petN gene petN petN 31043 31132 1 90 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_019 igs petN|psbM petN-psbM 31133 32079 0 947 LSC 0.000534 3 11 300 12 no 0.250000 4 0.750000 0.000534 0.988384 32.200000 psbM gene psbM psbM 32080 32184 -1 105 LSC 0.005051 1 0 300 300 no 0.000000 2 0.000000 0.005051 1.000000 37.200000 IGS_020 igs psbM|trnD-GTC psbM-trnD-GTC 32185 33336 0 1152 LSC 0.000723 5 0 92 300 no 0.333333 5 0.800000 0.000723 1.000000 39.000000 trnD-GTC tRNA trnD-GTC trnD-GTC 33337 33410 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_021 igs trnD-GTC|trnY-GTA trnD-GTC-trnY-GTA 33411 33888 0 478 LSC 0.000697 2 1 300 217 no 0.166667 4 0.500000 0.000698 1.000000 41.700000 trnY-GTA tRNA trnY-GTA trnY-GTA 33889 33972 -1 84 LSC 0.000000 0 0 300 133 no 0.000000 1 0.000000 0.000000 1.000000 28.700000 IGS_022 igs trnY-GTA|trnE-TTC trnY-GTA-trnE-TTC 33973 34032 0 60 LSC 0.000000 0 0 300 73 no 0.000000 1 0.000000 0.000000 1.000000 24.200000 trnE-TTC tRNA trnE-TTC trnE-TTC 34033 34105 -1 73 LSC 0.000000 0 0 300 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_023 igs trnE-TTC|trnT-GGT trnE-TTC-trnT-GGT 34106 34826 0 721 LSC 0.003521 9 38 300 74 no 0.666667 10 0.800000 0.003460 0.975035 51.300000 trnT-GGT tRNA trnT-GGT trnT-GGT 34827 34898 1 72 LSC 0.000000 0 0 300 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_024 igs trnT-GGT|psbD trnT-GGT-psbD 34899 36326 0 1428 LSC 0.086981 303 395 300 300 yes 0.583333 9 0.777778 0.116864 0.994398 89.900000 psbD gene psbD psbD 36327 37388 1 1062 LSC 0.000000 0 0 45 234 no 0.000000 1 0.000000 0.000000 1.000000 28.400000 psbC gene psbC psbC 37294 38757 1 1464 LSC 0.000818 3 0 300 163 no 0.166667 5 0.400000 0.000818 1.000000 41.000000 IGS_026 igs psbC|trnS-TGA psbC-trnS-TGA 38758 39009 0 252 LSC 0.008418 7 1 300 300 no 0.083333 3 0.333333 0.008421 1.000000 43.100000 trnS-TGA tRNA trnS-TGA trnS-TGA 39010 39102 -1 93 LSC 0.000000 0 0 82 300 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 IGS_027 igs trnS-TGA|psbZ trnS-TGA-psbZ 39103 39520 0 418 LSC 0.000000 0 0 175 65 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 psbZ gene psbZ psbZ 39521 39709 1 189 LSC 0.002565 1 0 300 300 no 0.000000 2 0.000000 0.002565 1.000000 35.600000 IGS_028 igs psbZ|trnG-GCC psbZ-trnG-GCC 39710 40075 0 366 LSC 0.000525 1 35 123 300 no 0.166667 4 0.500000 0.000442 0.945355 36.700000 trnG-GCC tRNA trnG-GCC trnG-GCC 40076 40146 1 71 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_029 igs trnG-GCC|trnfM-CAT trnG-GCC-trnfM-CAT 40147 40369 0 223 LSC 0.000000 0 1 300 300 no 0.083333 2 0.500000 0.000000 1.000000 35.900000 trnfM-CAT tRNA trnfM-CAT trnfM-CAT 40370 40443 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_030 igs trnfM-CAT|rps14 trnfM-CAT-rps14 40444 40605 0 162 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps14 gene rps14 rps14 40606 40908 -1 303 LSC 0.000550 1 0 300 29 no 0.083333 2 0.500000 0.000550 1.000000 23.200000 IGS_031 igs rps14|psaB rps14-psaB 40909 41038 0 130 LSC 0.003730 1 0 300 300 no 0.000000 2 0.000000 0.003730 1.000000 36.400000 psaB gene psaB psaB 41039 43243 -1 2205 LSC 0.000316 2 0 100 300 no 0.083333 3 0.333333 0.000316 1.000000 32.800000 IGS_032 igs psaB|psaA psaB-psaA 43244 43268 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 43269 45521 -1 2253 LSC 0.000222 3 0 300 70 no 0.250000 4 0.750000 0.000222 1.000000 33.600000 IGS_033 igs psaA|ycf3 psaA-ycf3 45522 46294 0 773 LSC 0.003822 7 9 300 300 no 0.333333 6 0.666667 0.003710 1.000000 50.500000 ycf3 gene ycf3 ycf3 46295 48296 -1 2002 LSC 0.000318 3 8 46 24 no 0.166667 4 0.500000 0.000319 1.000000 29.700000 IGS_034 igs ycf3|trnS-GGA ycf3-trnS-GGA 48297 48714 0 418 LSC 0.002373 4 6 300 119 no 0.416667 7 0.714286 0.002379 0.990431 41.600000 trnS-GGA tRNA trnS-GGA trnS-GGA 48715 48801 1 87 LSC 0.000000 0 0 300 32 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_035 igs trnS-GGA|rps4 trnS-GGA-rps4 48802 49117 0 316 LSC 0.001534 1 0 300 300 no 0.000000 2 0.000000 0.001534 1.000000 35.200000 rps4 gene rps4 rps4 49118 49723 -1 606 LSC 0.000000 0 0 283 266 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_036 igs rps4|trnT-TGT rps4-trnT-TGT 49724 50057 0 334 LSC 0.001452 1 1 300 180 no 0.000000 3 0.000000 0.001456 0.997006 34.300000 trnT-TGT tRNA trnT-TGT trnT-TGT 50058 50130 -1 73 LSC 0.000000 0 0 67 107 no 0.000000 1 0.000000 0.000000 1.000000 23.800000 IGS_037 igs trnT-TGT|trnF-GAA trnT-TGT-trnF-GAA 50131 51920 0 1790 LSC 0.003024 15 64 140 300 yes 0.833333 11 0.909091 0.003042 0.998883 57.200000 trnF-GAA tRNA trnF-GAA trnF-GAA 51921 51993 1 73 LSC 0.000000 0 0 300 249 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_038 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 51994 52780 0 787 LSC 0.002536 9 41 300 300 yes 0.750000 10 0.900000 0.002284 1.000000 62.500000 ndhJ gene ndhJ ndhJ 52781 53257 -1 477 LSC 0.001048 3 0 168 300 no 0.250000 4 0.750000 0.001048 1.000000 41.000000 IGS_039 igs ndhJ|ndhK ndhJ-ndhK 53258 53405 0 148 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhK gene ndhK ndhK 53406 54086 -1 681 LSC 0.000245 1 0 300 300 no 0.083333 2 0.500000 0.000245 1.000000 41.900000 IGS_040 igs ndhK|ndhC ndhK-ndhC 54087 54143 0 57 LSC 0.000000 0 1 300 300 no 0.000000 2 0.000000 0.000000 0.982456 35.400000 ndhC gene ndhC ndhC 54144 54506 -1 363 LSC 0.000918 2 0 300 235 no 0.166667 3 0.666667 0.000918 1.000000 39.300000 IGS_041 igs ndhC|trnM-CAT ndhC-trnM-CAT 54507 55926 0 1420 LSC 0.003361 16 20 300 300 yes 0.833333 11 0.909091 0.003305 1.000000 60.300000 trnM-CAT tRNA trnM-CAT trnM-CAT 55927 55999 1 73 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_042 igs trnM-CAT|atpE trnM-CAT-atpE 56000 56221 0 222 LSC 0.001502 2 0 300 300 no 0.166667 3 0.666667 0.001502 1.000000 38.700000 atpE gene atpE atpE 56222 56620 -1 399 LSC 0.000418 1 0 300 300 no 0.083333 2 0.500000 0.000418 1.000000 37.900000 IGS_043 igs atpE|atpB atpE-atpB 56621 56642 0 22 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 atpB gene atpB atpB 56643 58118 -1 1476 LSC 0.000431 3 0 300 228 no 0.250000 5 0.600000 0.000431 1.000000 45.100000 IGS_044 igs atpB|rbcL atpB-rbcL 58119 58943 0 825 LSC 0.001377 3 7 23 300 no 0.500000 8 0.750000 0.001380 1.000000 38.200000 rbcL gene rbcL rbcL 58944 60371 1 1428 LSC 0.000488 2 0 236 300 no 0.083333 3 0.333333 0.000488 1.000000 42.000000 IGS_045 igs rbcL|accD rbcL-accD 60372 61093 0 722 LSC 0.001681 5 1 300 111 no 0.166667 5 0.400000 0.001681 0.998615 38.200000 accD gene accD accD 61094 62590 1 1497 LSC 0.001660 7 0 199 24 no 0.250000 5 0.600000 0.001660 1.000000 32.800000 IGS_046 igs accD|psaI accD-psaI 62591 63469 0 879 LSC 0.005716 24 78 63 300 no 0.500000 9 0.666667 0.005763 0.980660 50.200000 psaI gene psaI psaI 63470 63583 1 114 LSC 0.000000 0 0 300 192 no 0.000000 1 0.000000 0.000000 1.000000 33.100000 IGS_047 igs psaI|ycf4 psaI-ycf4 63584 64003 0 420 LSC 0.002814 3 1 300 173 no 0.166667 4 0.500000 0.002815 1.000000 39.800000 ycf4 gene ycf4 ycf4 64004 64558 1 555 LSC 0.000846 2 0 47 119 no 0.083333 3 0.333333 0.000846 1.000000 30.000000 IGS_048 igs ycf4|cemA ycf4-cemA 64559 64981 0 423 LSC 0.002257 3 4 300 300 no 0.500000 9 0.666667 0.002264 0.997636 48.700000 cemA gene cemA cemA 64982 65671 1 690 LSC 0.000483 2 0 80 300 no 0.166667 3 0.666667 0.000483 1.000000 34.700000 IGS_049 igs cemA|petA cemA-petA 65672 65884 0 213 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petA gene petA petA 65885 66850 1 966 LSC 0.000674 2 0 300 13 no 0.083333 3 0.333333 0.000674 1.000000 28.100000 IGS_050 igs petA|psbJ petA-psbJ 66851 67957 0 1107 LSC 0.001382 7 5 300 300 yes 0.750000 10 0.900000 0.001385 0.999097 56.000000 psbJ gene psbJ psbJ 67958 68080 -1 123 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_051 igs psbJ|psbL psbJ-psbL 68081 68219 0 139 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbL gene psbL psbL 68220 68336 -1 117 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_052 igs psbL|psbF psbL-psbF 68337 68358 0 22 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbF gene psbF psbF 68359 68478 -1 120 LSC 0.001389 1 0 300 300 no 0.083333 2 0.500000 0.001389 1.000000 37.000000 IGS_053 igs psbF|psbE psbF-psbE 68479 68487 0 9 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 68488 68739 -1 252 LSC 0.000661 1 0 300 89 no 0.083333 2 0.500000 0.000661 1.000000 27.800000 IGS_054 igs psbE|petL psbE-petL 68740 69792 0 1053 LSC 0.002331 9 1 300 300 yes 0.750000 10 0.900000 0.002333 0.999050 56.300000 petL gene petL petL 69793 69888 1 96 LSC 0.000000 0 0 156 300 no 0.000000 1 0.000000 0.000000 1.000000 30.400000 IGS_055 igs petL|petG petL-petG 69889 70062 0 174 LSC 0.000958 1 0 252 300 no 0.083333 2 0.500000 0.000958 1.000000 36.500000 petG gene petG petG 70063 70176 1 114 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_056 igs petG|trnW-CCA petG-trnW-CCA 70177 70256 0 80 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnW-CCA tRNA trnW-CCA trnW-CCA 70257 70330 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_057 igs trnW-CCA|trnP-TGG trnW-CCA-trnP-TGG 70331 70494 0 164 LSC 0.000000 0 23 300 300 no 0.000000 2 0.000000 0.000000 1.000000 38.500000 trnP-TGG tRNA trnP-TGG trnP-TGG 70495 70568 -1 74 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_058 igs trnP-TGG|psaJ trnP-TGG-psaJ 70569 70979 0 411 LSC 0.000406 1 1 300 234 no 0.166667 3 0.666667 0.000406 1.000000 40.000000 psaJ gene psaJ psaJ 70980 71108 1 129 LSC 0.000000 0 0 300 105 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 IGS_059 igs psaJ|rpl33 psaJ-rpl33 71109 71587 0 479 LSC 0.001360 2 0 300 50 no 0.083333 3 0.333333 0.001360 1.000000 28.900000 rpl33 gene rpl33 rpl33 71588 71809 1 222 LSC 0.002389 1 0 300 300 no 0.000000 2 0.000000 0.002389 1.000000 35.400000 IGS_060 igs rpl33|rps18 rpl33-rps18 71810 71952 0 143 LSC 0.001166 1 0 171 300 no 0.083333 2 0.500000 0.001166 1.000000 34.500000 rps18 gene rps18 rps18 71953 72258 1 306 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.900000 IGS_061 igs rps18|rpl20 rps18-rpl20 72259 72527 0 269 LSC 0.002535 4 5 300 300 no 0.333333 5 0.800000 0.002436 1.000000 45.300000 rpl20 gene rpl20 rpl20 72528 72881 -1 354 LSC 0.001412 3 0 300 300 no 0.166667 3 0.666667 0.001412 1.000000 39.700000 IGS_062 igs rpl20|rps12 rpl20-rps12 72882 73692 0 811 LSC 0.001887 7 0 300 215 no 0.333333 6 0.666667 0.001887 1.000000 48.200000 rps12_part1 gene rps12 rps12 73693 73807 -1 115 LSC 0.000000 0 0 206 100 no 0.000000 1 0.000000 0.000000 1.000000 26.200000 IGS_063 igs rps12|clpP rps12-clpP 73808 73945 0 138 LSC 0.003843 1 0 300 213 no 0.000000 2 0.000000 0.003843 1.000000 36.400000 clpP gene clpP clpP 73946 75959 -1 2014 LSC 0.001106 7 6 37 300 no 0.666667 10 0.800000 0.001108 0.998014 40.400000 IGS_064 igs clpP|psbB clpP-psbB 75960 76425 0 466 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.200000 psbB gene psbB psbB 76426 77952 1 1527 LSC 0.000863 6 0 300 300 no 0.250000 5 0.600000 0.000863 1.000000 45.500000 IGS_065 igs psbB|psbT psbB-psbT 77953 78138 0 186 LSC 0.001792 2 0 300 300 no 0.166667 3 0.666667 0.001792 1.000000 39.000000 psbT gene psbT psbT 78139 78246 1 108 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_066 igs psbT|psbN psbT-psbN 78247 78318 0 72 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psbN gene psbN psbN 78319 78450 -1 132 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_067 igs psbN|psbH psbN-psbH 78451 78565 0 115 LSC 0.001449 1 0 300 300 no 0.083333 2 0.500000 0.001449 1.000000 37.100000 psbH gene psbH psbH 78566 78787 1 222 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_068 igs psbH|petB psbH-petB 78788 78911 0 124 LSC 0.001344 1 0 300 300 no 0.083333 2 0.500000 0.001344 1.000000 36.900000 petB gene petB petB 78912 80352 1 1441 LSC 0.000631 4 0 300 300 no 0.250000 5 0.600000 0.000631 1.000000 45.300000 IGS_069 igs petB|petD petB-petD 80353 80561 0 209 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 petD gene petD petD 80562 81664 1 1103 LSC 0.000453 3 0 300 300 no 0.250000 4 0.750000 0.000453 1.000000 45.200000 IGS_070 igs petD|rpoA petD-rpoA 81665 81832 0 168 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoA gene rpoA rpoA 81833 82828 -1 996 LSC 0.000867 3 0 300 300 no 0.166667 4 0.500000 0.000867 1.000000 43.900000 IGS_071 igs rpoA|rps11 rpoA-rps11 82829 82897 0 69 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps11 gene rps11 rps11 82898 83314 -1 417 LSC 0.000400 1 0 300 300 no 0.083333 2 0.500000 0.000400 1.000000 38.200000 IGS_072 igs rps11|rpl36 rps11-rpl36 83315 83457 0 143 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl36 gene rpl36 rpl36 83458 83571 -1 114 LSC 0.001462 1 0 300 300 no 0.083333 2 0.500000 0.001462 1.000000 37.100000 IGS_073 igs rpl36|infA rpl36-infA 83572 83713 0 142 LSC 0.001174 1 1 300 300 no 0.083333 3 0.333333 0.001177 1.000000 37.500000 infA gene infA infA 83714 83926 -1 213 LSC 0.000782 1 0 300 273 no 0.083333 2 0.500000 0.000782 1.000000 36.300000 IGS_074 igs infA|rps8 infA-rps8 83927 84053 0 127 LSC 0.000000 0 2 300 146 no 0.000000 3 0.000000 0.000000 0.992126 31.300000 rps8 gene rps8 rps8 84054 84458 -1 405 LSC 0.002132 3 0 300 262 no 0.166667 4 0.500000 0.002132 1.000000 40.900000 IGS_075 igs rps8|rpl14 rps8-rpl14 84459 84633 0 175 LSC 0.000952 1 0 258 87 no 0.083333 2 0.500000 0.000952 1.000000 28.000000 rpl14 gene rpl14 rpl14 84634 85002 -1 369 LSC 0.002340 3 0 300 68 no 0.166667 4 0.500000 0.002340 1.000000 30.500000 IGS_076 igs rpl14|rpl16 rpl14-rpl16 85003 85138 0 136 LSC 0.003454 2 5 281 300 no 0.250000 6 0.500000 0.003490 1.000000 46.300000 rpl16 gene rpl16 rpl16 85139 86618 -1 1480 LSC 0.001475 9 1 67 300 no 0.333333 7 0.571429 0.001475 0.999324 37.800000 IGS_077 igs rpl16|rps3 rpl16-rps3 86619 86778 0 160 LSC 0.000000 0 3 187 300 no 0.083333 3 0.333333 0.000000 0.993750 36.400000 rps3 gene rps3 rps3 86779 87438 -1 660 LSC 0.000758 3 0 300 254 no 0.250000 4 0.750000 0.000758 1.000000 45.600000 rpl22 gene rpl22 rpl22 87423 87938 -1 516 LSC 0.002290 4 0 300 300 no 0.250000 6 0.500000 0.002290 1.000000 44.900000 IGS_079 igs rpl22|rps19 rpl22-rps19 87939 88004 0 66 LSC 0.000000 0 0 43 300 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 rps19 gene rps19 rps19 88005 88283 -1 279 LSC 0.000000 0 0 109 300 no 0.000000 1 0.000000 0.000000 1.000000 26.900000 IGS_080 igs rps19|rpl2 rps19-rpl2 88284 88343 0 60 IRb 0.000000 0 1 300 300 no 0.000000 2 0.000000 0.000000 0.983333 35.400000 rpl2 gene rpl2 rpl2 88344 89856 -1 1513 IRb 0.000110 1 0 300 300 no 0.083333 2 0.500000 0.000110 1.000000 41.700000 IGS_081 igs rpl2|trnI-CAT rpl2-trnI-CAT 89857 90329 0 473 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.400000 trnI-CAT tRNA trnI-CAT trnI-CAT 90330 90403 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_082 igs trnI-CAT|ycf2 trnI-CAT-ycf2 90404 90491 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 90492 97313 1 6822 IRb 0.000200 6 0 300 267 no 0.250000 5 0.600000 0.000200 1.000000 38.600000 IGS_083 igs ycf2|ycf15 ycf2-ycf15 97314 97460 0 147 IRb 0.000000 0 0 300 120 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 ycf15 gene ycf15 ycf15 97461 97514 1 54 IRb 0.000000 0 0 300 66 no 0.000000 1 0.000000 0.000000 1.000000 23.700000 IGS_084 igs ycf15|trnL-CAA ycf15-trnL-CAA 97515 97976 0 462 IRb 0.000656 1 0 300 300 no 0.000000 2 0.000000 0.000656 1.000000 37.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 97977 98057 -1 81 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_085 igs trnL-CAA|ndhB trnL-CAA-ndhB 98058 98634 0 577 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.500000 ndhB gene ndhB ndhB 98635 100859 -1 2225 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_086 igs ndhB|rps7 ndhB-rps7 100860 101177 0 318 IRb 0.000000 0 1 300 300 no 0.083333 2 0.500000 0.000000 1.000000 36.100000 rps7 gene rps7 rps7 101178 101645 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_087 igs rps7|rps12 rps7-rps12 101646 101700 0 55 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps12_part2 gene rps12 rps12 101701 102500 -1 800 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_088 igs rps12|trnV-GAC rps12-trnV-GAC 102501 104196 0 1696 IRb 0.000295 3 0 300 300 no 0.083333 2 0.500000 0.000295 1.000000 41.500000 trnV-GAC tRNA trnV-GAC trnV-GAC 104197 104268 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_089 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 104269 104495 0 227 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 104496 105986 -1 1491 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_090 igs rrn16S|rrn23S rrn16S-rrn23S 105987 108409 0 2423 SSC 0.000138 2 1 300 300 no 0.250000 4 0.750000 0.000138 1.000000 43.000000 rrn23S rRNA rrn23S rrn23S 108410 111218 -1 2809 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_091 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 111219 111316 0 98 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 111317 111587 1 271 SSC 0.000000 0 1 300 300 no 0.000000 2 0.000000 0.000000 0.996310 34.100000 IGS_092 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 111588 111678 0 91 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 111679 111800 1 122 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_093 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 111801 112055 0 255 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 112056 112129 1 74 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_094 igs trnR-ACG|trnN-GTT trnR-ACG-trnN-GTT 112130 112751 0 622 SSC 0.002217 5 0 300 300 no 0.083333 3 0.333333 0.002217 1.000000 43.600000 trnN-GTT tRNA trnN-GTT trnN-GTT 112752 112823 -1 72 SSC 0.000000 0 0 19 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_095 igs trnN-GTT|rpl32 trnN-GTT-rpl32 112824 117578 0 4755 SSC 0.003368 40 50 91 219 yes 1.000000 12 1.000000 0.001724 0.990326 48.200000 rpl32 gene rpl32 rpl32 117579 117734 1 156 SSC 0.000000 0 0 266 63 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_096 igs rpl32|trnL-TAG rpl32-trnL-TAG 117735 118752 0 1018 SSC 0.001824 8 42 300 300 yes 0.666667 9 0.888889 0.001705 0.977407 58.400000 trnL-TAG tRNA trnL-TAG trnL-TAG 118753 118832 1 80 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_097 igs trnL-TAG|ccsA trnL-TAG-ccsA 118833 118938 0 106 SSC 0.001587 1 5 300 300 no 0.166667 5 0.400000 0.001627 0.990566 44.100000 ccsA gene ccsA ccsA 118939 119895 1 957 SSC 0.000507 1 0 300 222 no 0.000000 2 0.000000 0.000507 1.000000 40.400000 IGS_098 igs ccsA|ndhD ccsA-ndhD 119896 120230 0 335 SSC 0.004555 7 21 300 272 no 0.166667 4 0.500000 0.004668 0.943284 46.500000 ndhD gene ndhD ndhD 120231 121751 -1 1521 SSC 0.001385 9 0 112 300 no 0.416667 8 0.625000 0.001385 1.000000 42.500000 IGS_099 igs ndhD|psaC ndhD-psaC 121752 121872 0 121 SSC 0.002755 2 0 220 300 no 0.083333 2 0.500000 0.002755 1.000000 38.600000 psaC gene psaC psaC 121873 122118 -1 246 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_100 igs psaC|ndhE psaC-ndhE 122119 122399 0 281 SSC 0.000593 1 0 300 300 no 0.083333 2 0.500000 0.000593 1.000000 36.000000 ndhE gene ndhE ndhE 122400 122705 -1 306 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.900000 IGS_101 igs ndhE|ndhG ndhE-ndhG 122706 122931 0 226 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhG gene ndhG ndhG 122932 123462 -1 531 SSC 0.000000 0 0 300 124 no 0.000000 1 0.000000 0.000000 1.000000 32.900000 IGS_102 igs ndhG|ndhI ndhG-ndhI 123463 123867 0 405 SSC 0.004714 4 1 300 300 no 0.166667 5 0.400000 0.004715 1.000000 42.700000 ndhI gene ndhI ndhI 123868 124371 -1 504 SSC 0.000331 1 5 94 300 no 0.166667 4 0.500000 0.000332 0.994048 34.600000 IGS_103 igs ndhI|ndhA ndhI-ndhA 124372 124453 0 82 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhA gene ndhA ndhA 124454 126744 -1 2291 SSC 0.001164 13 17 300 300 yes 0.833333 11 0.909091 0.001166 1.000000 56.100000 IGS_104 igs ndhA|ndhH ndhA-ndhH 126745 126745 0 1 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 126746 127927 -1 1182 SSC 0.001448 4 0 300 300 no 0.166667 4 0.500000 0.001448 1.000000 44.200000 IGS_105 igs ndhH|rps15 ndhH-rps15 127928 128048 0 121 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps15 gene rps15 rps15 128049 128321 -1 273 SSC 0.000611 1 0 300 68 no 0.083333 2 0.500000 0.000611 1.000000 26.100000 IGS_106 igs rps15|ycf1 rps15-ycf1 128322 128621 0 300 SSC 0.002677 4 2 300 300 no 0.416667 7 0.714286 0.002678 1.000000 45.200000 ycf1 gene ycf1 ycf1 128622 134354 -1 5733 SSC 0.001448 34 6 231 300 no 1.000000 12 1.000000 0.001448 1.000000 54.000000 IGS_107 igs ycf1|trnN-GTT ycf1-trnN-GTT 134355 134678 0 324 SSC 0.000514 1 0 300 91 no 0.083333 2 0.500000 0.000514 1.000000 28.300000 trnN-GTT tRNA trnN-GTT trnN-GTT 134679 134750 1 72 SSC 0.000000 0 0 300 19 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_108 igs trnN-GTT|trnR-ACG trnN-GTT-trnR-ACG 134751 135372 0 622 SSC 0.002217 5 0 300 300 no 0.083333 3 0.333333 0.002217 1.000000 43.600000 trnR-ACG tRNA trnR-ACG trnR-ACG 135373 135446 -1 74 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_109 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 135447 135701 0 255 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 135702 135823 -1 122 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_110 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 135824 135914 0 91 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 135915 136185 -1 271 SSC 0.000000 0 1 300 300 no 0.000000 2 0.000000 0.000000 0.996310 34.100000 IGS_111 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 136186 136283 0 98 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 136284 139092 1 2809 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_112 igs rrn23S|rrn16S rrn23S-rrn16S 139093 141515 0 2423 SSC 0.000138 2 0 300 300 no 0.166667 3 0.666667 0.000138 1.000000 41.400000 rrn16S rRNA rrn16S rrn16S 141516 143007 1 1492 IRa 0.000000 0 1 300 300 no 0.000000 2 0.000000 0.000000 1.000000 40.100000 IGS_113 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 143008 143234 0 227 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 143235 143306 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_114 igs trnV-GAC|rps12 trnV-GAC-rps12 143307 145005 0 1699 IRa 0.000294 3 0 300 300 no 0.083333 2 0.500000 0.000294 1.000000 41.500000 rps12_part2 gene rps12 rps12 145006 145802 1 797 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_115 igs rps12|rps7 rps12-rps7 145803 145857 0 55 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 145858 146325 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_116 igs rps7|ndhB rps7-ndhB 146326 146643 0 318 IRa 0.000000 0 1 300 300 no 0.083333 2 0.500000 0.000000 1.000000 36.100000 ndhB gene ndhB ndhB 146644 148868 1 2225 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 38.500000 IGS_117 igs ndhB|trnL-CAA ndhB-trnL-CAA 148869 149445 0 577 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 39.500000 trnL-CAA tRNA trnL-CAA trnL-CAA 149446 149526 1 81 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_118 igs trnL-CAA|ycf2 trnL-CAA-ycf2 149527 150189 0 663 IRa 0.000457 1 0 300 300 no 0.000000 2 0.000000 0.000457 1.000000 40.400000 ycf2 gene ycf2 ycf2 150190 157011 -1 6822 IRa 0.000200 6 0 267 300 no 0.250000 5 0.600000 0.000200 1.000000 38.600000 IGS_119 igs ycf2|trnI-CAT ycf2-trnI-CAT 157012 157099 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAT tRNA trnI-CAT trnI-CAT 157100 157173 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_120 igs trnI-CAT|rpl23 trnI-CAT-rpl23 157174 157338 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 157339 157614 1 276 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_121 igs rpl23|rpl2 rpl23-rpl2 157615 157646 0 32 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl2 gene rpl2 rpl2 157647 159159 1 1513 IRa 0.000110 1 0 300 209 no 0.083333 2 0.500000 0.000110 1.000000 41.700000 IGS_122 igs rpl2|trnH-GTG rpl2-trnH-GTG 159160 9 0 72 IRa 0.000000 0 29 300 137 no 0.166667 4 0.500000 0.000000 1.000000 36.600000