Hotspot

atpH-atpI

LSC · 14191-15204 · 1014 bp

Back to Callicarpa

Pi 0.00275

MarkerSeek score 51.30

Primer available yes

Label atpH-atpI

Feature Metadata

label_name: atpH-atpI
feature_type: igs
region: LSC
length_bp: 1014
variable_sites: 21
pi: 0.00275
unique_haplotype_count: 10
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 51.30

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
atpH-atpI_p1	AACGGAAGCAGCAGAAATCA	TCCCTGTCATGTTCCTTGGA	45.0	50.0	58.1	58.3	1142-1149 bp	1.0	79.1
atpH-atpI_p2	AGCCAATCCAGCAGCAATAA	TCCCTGTCATGTTCCTTGGA	45.0	50.0	57.9	58.3	1160-1167 bp	1.0	78.7
atpH-atpI_p3	GCCAATCCAGCAGCAATAAC	TCCCTGTCATGTTCCTTGGA	50.0	50.0	57.8	58.3	1159-1166 bp	1.0	78.2
atpH-atpI_p4	TCCAGCAGCAATAACGGAAG	TCCCTGTCATGTTCCTTGGA	50.0	50.0	58.3	58.3	1154-1161 bp	1.0	77.8
atpH-atpI_p5	AACGGAAGCAGCAGAAATCA	TTTTTGCAACTTTAGCCGCG	45.0	45.0	58.1	58.5	1094-1101 bp	1.0	77.1