feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 1 70 1 70 LSC 0.009524 1 1 152 2 no 0.000000 2 0.000000 0.009662 0.985714 26.400000 IGS_001 igs trnH|psbA trnH-psbA 71 326 0 256 LSC 0.096354 44 20 19 24 yes 1.000000 4 1.000000 0.085637 0.980469 79.200000 psbA gene psbA psbA 327 1388 -1 1062 LSC 0.008475 17 0 8 144 yes 1.000000 4 1.000000 0.008475 1.000000 50.200000 IGS_002 igs psbA|trnK psbA-trnK 1389 1662 0 274 LSC 0.024254 11 6 77 58 no 1.000000 4 1.000000 0.024254 0.978102 59.700000 trnK_part2 tRNA trnK trnK 1663 1698 -1 36 LSC 0.000000 0 0 3 22 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 matK gene matK matK 1997 3511 -1 1515 LSC 0.022882 63 9 2 2 no 1.000000 4 1.000000 0.022959 1.000000 60.100000 IGS_005 igs matK|trnK matK-trnK 3512 4247 0 736 LSC 0.017460 23 5 12 57 no 1.000000 4 1.000000 0.017524 0.995924 57.100000 trnK_part1 tRNA trnK trnK 4248 4284 -1 37 LSC 0.000000 0 0 12 20 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_006 igs trnK|trnQ trnK-trnQ 4285 6502 0 2218 LSC 0.035563 137 148 49 76 yes 1.000000 4 1.000000 0.034971 0.972949 74.800000 trnQ tRNA trnQ trnQ 6503 6574 -1 72 LSC 0.000000 0 0 29 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_007 igs trnQ|psbK trnQ-psbK 6575 6929 0 355 LSC 0.040720 23 5 101 24 no 1.000000 4 1.000000 0.036147 0.985915 68.200000 psbK gene psbK psbK 6930 7115 1 186 LSC 0.013441 5 0 30 37 no 1.000000 4 1.000000 0.013441 1.000000 49.200000 IGS_008 igs psbK|psbI psbK-psbI 7116 7537 0 422 LSC 0.038889 30 6 62 95 no 1.000000 4 1.000000 0.037159 0.988152 72.500000 psbI gene psbI psbI 7538 7648 1 111 LSC 0.004505 1 0 4 9 no 0.250000 2 0.500000 0.004505 1.000000 26.900000 IGS_009 igs psbI|trnS psbI-trnS 7649 7746 0 98 LSC 0.027473 5 7 15 92 no 1.000000 4 1.000000 0.027473 0.928571 61.000000 trnS tRNA trnS trnS 7747 7834 -1 88 LSC 0.000000 0 0 8 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_010 igs trnS|trnT trnS-trnT 7835 8451 0 617 LSC 0.040379 43 10 96 34 yes 1.000000 4 1.000000 0.040656 0.996759 75.000000 trnT_part1 tRNA trnT trnT 8452 8485 1 34 LSC 0.000000 0 0 45 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnT_part2 tRNA trnT trnT 9204 9245 1 42 LSC 0.000000 0 0 24 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_013 igs trnT|trnR trnT-trnR 9246 9406 0 161 LSC 0.054865 16 0 66 82 yes 1.000000 4 1.000000 0.054865 1.000000 77.400000 trnR tRNA trnR trnR 9407 9478 1 72 LSC 0.000000 0 2 7 10 no 0.250000 2 0.500000 0.000000 1.000000 27.200000 IGS_014 igs trnR|atpA trnR-atpA 9479 9791 0 313 LSC 0.059759 30 34 79 30 yes 1.000000 4 1.000000 0.054411 0.926518 78.200000 atpA gene atpA atpA 9792 11315 -1 1524 LSC 0.013342 38 0 27 45 no 1.000000 4 1.000000 0.013342 1.000000 54.800000 IGS_015 igs atpA|atpF atpA-atpF 11316 11380 0 65 LSC 0.015385 2 0 20 11 no 0.250000 2 0.500000 0.015385 1.000000 35.000000 atpF gene atpF atpF 11381 12657 -1 1277 LSC 0.012007 28 6 11 13 no 1.000000 4 1.000000 0.012038 1.000000 53.300000 IGS_016 igs atpF|atpH atpF-atpH 12658 13127 0 470 LSC 0.026221 21 13 36 153 no 1.000000 4 1.000000 0.024708 0.974468 63.700000 atpH gene atpH atpH 13128 13373 -1 246 LSC 0.002710 1 0 10 53 no 0.000000 2 0.000000 0.002710 1.000000 21.200000 IGS_017 igs atpH|atpI atpH-atpI 13374 13901 0 528 LSC 0.041420 38 33 92 300 yes 1.000000 4 1.000000 0.042195 0.939394 81.000000 atpI gene atpI atpI 13902 14651 -1 750 LSC 0.003778 5 0 12 47 no 1.000000 4 1.000000 0.003778 1.000000 47.200000 IGS_018 igs atpI|rps2 atpI-rps2 14652 14891 0 240 LSC 0.029167 13 1 61 4 no 1.000000 4 1.000000 0.029219 1.000000 58.200000 rps2 gene rps2 rps2 14892 15602 -1 711 LSC 0.007267 10 0 21 73 no 1.000000 4 1.000000 0.007267 1.000000 50.400000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 15603 15816 0 214 LSC 0.018692 8 12 50 5 no 1.000000 4 1.000000 0.019414 1.000000 56.800000 rpoC2 gene rpoC2 rpoC2 15817 19959 -1 4143 LSC 0.013477 102 0 16 62 no 1.000000 4 1.000000 0.013477 1.000000 49.200000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 19960 20141 0 182 LSC 0.020147 6 1 36 15 no 0.500000 3 0.666667 0.015628 0.994505 43.000000 rpoC1 gene rpoC1 rpoC1 20142 22968 -1 2827 LSC 0.010321 52 5 19 4 no 1.000000 4 1.000000 0.010329 0.999293 48.400000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 22969 22994 0 26 LSC 0.019231 1 0 62 236 no 0.250000 2 0.500000 0.019231 1.000000 41.500000 rpoB gene rpoB rpoB 22995 26213 -1 3219 LSC 0.007093 41 0 21 68 no 1.000000 4 1.000000 0.007093 1.000000 46.600000 IGS_022 igs rpoB|trnC rpoB-trnC 26214 27302 0 1089 LSC 0.030609 60 13 107 83 no 1.000000 4 1.000000 0.030476 0.998163 72.000000 trnC tRNA trnC trnC 27303 27374 1 72 LSC 0.000000 0 0 5 11 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_023 igs trnC|ycf6 trnC-ycf6 27375 28051 0 677 LSC 0.020640 24 37 77 99 no 1.000000 4 1.000000 0.020224 0.952733 67.700000 ycf6 gene ycf6 ycf6 28052 28141 1 90 LSC 0.000000 0 0 92 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_024 igs ycf6|psbM ycf6-psbM 28142 28697 0 556 LSC 0.020871 21 12 182 18 no 1.000000 4 1.000000 0.021066 0.980216 60.400000 psbM gene psbM psbM 28698 28802 -1 105 LSC 0.011111 2 0 23 65 no 0.500000 3 0.666667 0.011111 1.000000 37.200000 IGS_025 igs psbM|trnD psbM-trnD 28803 29841 0 1039 LSC 0.029802 54 189 8 80 no 1.000000 4 1.000000 0.031564 0.835419 65.700000 trnD tRNA trnD trnD 29842 29918 -1 77 LSC 0.000000 0 0 18 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_026 igs trnD|trnY trnD-trnY 29919 30353 0 435 LSC 0.033643 26 4 95 119 no 1.000000 4 1.000000 0.033643 0.990805 70.900000 trnY tRNA trnY trnY 30354 30439 -1 86 LSC 0.000000 0 0 50 33 no 0.000000 1 0.000000 0.000000 1.000000 21.200000 IGS_027 igs trnY|trnE trnY-trnE 30440 30496 0 57 LSC 0.023392 2 0 136 80 no 0.000000 2 0.000000 0.023392 1.000000 39.700000 IGS_028 igs trnE|trnT trnE-trnT 30572 31396 0 825 LSC 0.027329 41 24 84 81 no 1.000000 4 1.000000 0.027430 0.972121 71.000000 IGS_029 igs trnT|psbD trnT-psbD 31471 32612 0 1142 LSC 0.026401 51 32 80 122 no 1.000000 4 1.000000 0.024454 0.982487 70.100000 psbD gene psbD psbD 32613 33674 1 1062 LSC 0.005807 11 0 2 39 no 1.000000 4 1.000000 0.005807 1.000000 47.800000 psbC gene psbC psbC 33622 35043 1 1422 LSC 0.008673 22 0 88 22 no 1.000000 4 1.000000 0.008673 1.000000 51.200000 IGS_031 igs psbC|trnS psbC-trnS 35044 35223 0 180 LSC 0.023148 8 0 12 100 no 0.500000 3 0.666667 0.023148 1.000000 45.000000 trnS tRNA trnS trnS 35224 35316 -1 93 LSC 0.000000 0 0 15 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_032 igs trnS|ycf9 trnS-ycf9 35317 35659 0 343 LSC 0.023392 15 1 108 74 no 1.000000 4 1.000000 0.023392 0.997085 60.200000 ycf9 gene ycf9 ycf9 35660 35848 1 189 LSC 0.012346 4 0 24 47 no 0.500000 3 0.666667 0.012346 1.000000 38.100000 IGS_033 igs ycf9|trnG ycf9-trnG 35849 36314 0 466 LSC 0.023963 20 14 27 92 no 1.000000 4 1.000000 0.022904 0.989270 62.400000 trnG tRNA trnG trnG 36315 36386 1 72 LSC 0.000000 0 0 5 20 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_034 igs trnG|trnM trnG-trnM 36387 36525 0 139 LSC 0.010791 3 0 77 59 no 1.000000 4 1.000000 0.010791 1.000000 49.500000 trnM tRNA trnM trnM 36526 36600 -1 75 LSC 0.006667 1 0 2 125 no 0.250000 2 0.500000 0.006667 1.000000 28.300000 IGS_035 igs trnM|rps14 trnM-rps14 36601 36759 0 159 LSC 0.006289 2 0 15 57 no 0.500000 3 0.666667 0.006289 1.000000 33.700000 rps14 gene rps14 rps14 36760 37062 -1 303 LSC 0.008801 5 0 6 94 no 1.000000 4 1.000000 0.008801 1.000000 44.000000 IGS_036 igs rps14|psaB rps14-psaB 37063 37196 0 134 LSC 0.008706 2 0 96 45 no 0.500000 3 0.666667 0.008706 1.000000 37.300000 psaB gene psaB psaB 37197 39401 -1 2205 LSC 0.003477 14 0 16 94 no 1.000000 4 1.000000 0.003477 1.000000 45.800000 IGS_037 igs psaB|psaA psaB-psaA 39402 39426 0 25 LSC 0.000000 0 0 257 69 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 psaA gene psaA psaA 39427 41679 -1 2253 LSC 0.005918 25 0 282 56 no 1.000000 4 1.000000 0.005918 1.000000 50.400000 IGS_038 igs psaA|ycf3 psaA-ycf3 41680 42398 0 719 LSC 0.026573 34 23 29 15 no 1.000000 4 1.000000 0.026588 0.979138 66.000000 ycf3 gene ycf3 ycf3 42399 43570 -1 1172 LSC 0.010390 22 5 12 79 no 1.000000 4 1.000000 0.010419 0.995734 52.100000 IGS_039 igs ycf3|trnS ycf3-trnS 43571 44671 0 1101 LSC 0.006784 13 24 107 86 no 1.000000 4 1.000000 0.006794 0.981835 56.800000 trnS tRNA trnS trnS 44672 44757 1 86 LSC 0.000000 0 0 300 0 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_040 igs trnS|rps4 trnS-rps4 44758 45068 0 311 LSC 0.025723 15 0 300 105 no 0.500000 3 0.666667 0.025723 1.000000 53.800000 rps4 gene rps4 rps4 45069 45674 -1 606 LSC 0.005776 7 0 5 16 no 1.000000 4 1.000000 0.005776 1.000000 48.200000 IGS_041 igs rps4|trnT rps4-trnT 45675 46066 0 392 LSC 0.019481 13 7 35 88 no 1.000000 4 1.000000 0.019481 0.982143 56.500000 IGS_042 igs trnT|trnL trnT-trnL 46142 46959 0 818 LSC 0.025358 37 91 107 132 no 1.000000 4 1.000000 0.026707 0.896088 72.100000 trnL_part1 tRNA trnL trnL 46960 46994 1 35 LSC 0.000000 0 0 0 97 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnL_part2 tRNA trnL trnL 47316 47365 1 50 LSC 0.000000 0 0 24 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_045 igs trnL|trnF trnL-trnF 47366 47713 0 348 LSC 0.030829 20 2 74 80 no 1.000000 4 1.000000 0.030829 0.994253 65.600000 trnF tRNA trnF trnF 47714 47786 1 73 LSC 0.000000 0 0 72 7 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_046 igs trnF|ndhJ trnF-ndhJ 47787 48360 0 574 LSC 0.021053 23 11 145 99 no 1.000000 4 1.000000 0.021177 0.991289 67.100000 ndhJ gene ndhJ ndhJ 48361 48837 -1 477 LSC 0.009434 8 0 26 44 no 1.000000 4 1.000000 0.009434 1.000000 49.500000 IGS_047 igs ndhJ|psbG ndhJ-psbG 48838 48939 0 102 LSC 0.011438 2 6 5 48 no 0.500000 3 0.666667 0.011744 1.000000 41.900000 psbG gene psbG psbG 48940 49617 -1 678 LSC 0.007866 10 0 6 30 no 1.000000 4 1.000000 0.007866 1.000000 49.600000 IGS_048 igs psbG|ndhC psbG-ndhC 49618 49681 0 64 LSC 0.039062 4 6 26 87 no 1.000000 4 1.000000 0.029993 1.000000 70.400000 ndhC gene ndhC ndhC 49682 50044 -1 363 LSC 0.009642 6 0 2 51 no 1.000000 4 1.000000 0.009642 1.000000 45.400000 IGS_049 igs ndhC|trnV ndhC-trnV 50045 50797 0 753 LSC 0.041332 55 21 8 98 yes 1.000000 4 1.000000 0.039784 0.984064 75.000000 trnV_part2 tRNA trnV trnV 50798 50832 -1 35 LSC 0.000000 0 0 11 63 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 trnV_part1 tRNA trnV trnV 51439 51477 -1 39 LSC 0.000000 0 0 25 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_052 igs trnV|trnM trnV-trnM 51478 51661 0 184 LSC 0.011775 4 0 64 110 no 1.000000 4 1.000000 0.011775 1.000000 50.300000 trnM tRNA trnM trnM 51662 51734 1 73 LSC 0.000000 0 0 5 37 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_053 igs trnM|atpE trnM-atpE 51735 51818 0 84 LSC 0.005952 1 0 78 63 no 0.250000 2 0.500000 0.005952 1.000000 32.300000 atpE gene atpE atpE 51819 52217 -1 399 LSC 0.004177 3 0 46 1 no 1.000000 4 1.000000 0.004177 1.000000 42.500000 IGS_054 igs atpE|atpB atpE-atpB 52218 52237 0 20 LSC 0.025000 1 0 125 2 no 0.250000 2 0.500000 0.025000 1.000000 41.100000 atpB gene atpB atpB 52238 53710 -1 1473 LSC 0.008033 22 0 18 83 no 1.000000 4 1.000000 0.008033 1.000000 50.600000 IGS_055 igs atpB|rbcL atpB-rbcL 53711 54499 0 789 LSC 0.020487 30 27 22 40 no 1.000000 4 1.000000 0.019775 0.969582 62.700000 rbcL gene rbcL rbcL 54500 55939 1 1440 LSC 0.004167 11 0 45 8 no 1.000000 4 1.000000 0.004167 1.000000 47.200000 IGS_056 igs rbcL|accD rbcL-accD 55940 56623 0 684 LSC 0.022549 26 9 24 23 no 1.000000 4 1.000000 0.022159 0.991228 61.700000 accD gene accD accD 56624 58078 1 1455 LSC 0.010997 29 0 68 8 no 1.000000 4 1.000000 0.010997 1.000000 51.800000 IGS_057 igs accD|psaI accD-psaI 58079 58764 0 686 LSC 0.018245 23 13 56 26 no 1.000000 4 1.000000 0.018294 0.985423 59.900000 psaI gene psaI psaI 58765 58878 1 114 LSC 0.017544 4 0 156 13 no 0.500000 3 0.666667 0.017544 1.000000 41.400000 IGS_058 igs psaI|ycf4 psaI-ycf4 58879 59294 0 416 LSC 0.025485 19 4 36 44 no 1.000000 4 1.000000 0.025485 0.990385 60.700000 ycf4 gene ycf4 ycf4 59295 59852 1 558 LSC 0.010454 11 0 20 3 no 1.000000 4 1.000000 0.010454 1.000000 50.300000 IGS_059 igs ycf4|ycf10 ycf4-ycf10 59853 60307 0 455 LSC 0.029304 24 10 6 4 no 1.000000 4 1.000000 0.029797 0.980220 63.000000 ycf10 gene ycf10 ycf10 60308 60997 1 690 LSC 0.006522 8 0 2 23 no 1.000000 4 1.000000 0.006522 1.000000 48.300000 IGS_060 igs ycf10|petA ycf10-petA 60998 61211 0 214 LSC 0.016355 6 1 129 17 no 1.000000 4 1.000000 0.014823 1.000000 50.200000 petA gene petA petA 61212 62174 1 963 LSC 0.008134 14 0 16 27 no 1.000000 4 1.000000 0.008134 1.000000 50.400000 IGS_061 igs petA|psbJ petA-psbJ 62175 63147 0 973 LSC 0.024863 43 30 99 146 no 1.000000 4 1.000000 0.024524 0.978417 71.100000 psbJ gene psbJ psbJ 63148 63270 -1 123 LSC 0.000000 0 0 5 23 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_062 igs psbJ|psbL psbJ-psbL 63271 63416 0 146 LSC 0.010417 2 2 128 300 no 0.500000 3 0.666667 0.010417 0.986301 45.300000 psbL gene psbL psbL 63417 63533 -1 117 LSC 0.000000 0 0 50 288 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_063 igs psbL|psbF psbL-psbF 63534 63554 0 21 LSC 0.000000 0 0 167 267 no 0.000000 1 0.000000 0.000000 1.000000 31.300000 psbF gene psbF psbF 63555 63674 -1 120 LSC 0.000000 0 0 188 147 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 IGS_064 igs psbF|psbE psbF-psbE 63675 63683 0 9 LSC 0.000000 0 0 300 138 no 0.000000 1 0.000000 NA 1.000000 29.100000 psbE gene psbE psbE 63684 63935 -1 252 LSC 0.002646 1 0 300 120 no 0.000000 2 0.000000 0.002646 1.000000 29.400000 IGS_065 igs psbE|ORF31 psbE-ORF31 63936 64864 0 929 LSC 0.020654 35 16 113 188 no 1.000000 4 1.000000 0.020825 0.997847 68.200000 ORF31 gene ORF31 ORF31 64865 64960 1 96 LSC 0.000000 0 0 4 92 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_066 igs ORF31|petG ORF31-petG 64961 65147 0 187 LSC 0.019608 6 0 100 35 no 1.000000 4 1.000000 0.019608 1.000000 53.000000 petG gene petG petG 65148 65261 1 114 LSC 0.010234 2 0 35 22 no 0.500000 3 0.666667 0.010234 1.000000 36.600000 IGS_067 igs petG|trnW petG-trnW 65262 65390 0 129 LSC 0.047804 11 0 21 84 no 1.000000 4 1.000000 0.047804 1.000000 71.200000 trnW tRNA trnW trnW 65391 65463 -1 73 LSC 0.000000 0 0 15 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_068 igs trnW|trnP trnW-trnP 65464 65661 0 198 LSC 0.053229 19 7 88 102 yes 1.000000 4 1.000000 0.053229 0.964646 81.700000 trnP tRNA trnP trnP 65662 65736 -1 75 LSC 0.000000 0 0 12 27 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_069 igs trnP|psaJ trnP-psaJ 65737 66080 0 344 LSC 0.027697 17 8 87 127 no 1.000000 4 1.000000 0.026067 0.988372 66.000000 psaJ gene psaJ psaJ 66081 66209 1 129 LSC 0.003876 1 0 7 16 no 0.250000 2 0.500000 0.003876 1.000000 26.700000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 66210 66647 0 438 LSC 0.030338 25 10 1 74 no 1.000000 4 1.000000 0.030582 0.990868 63.700000 rpl33 gene rpl33 rpl33 66648 66848 1 201 LSC 0.013267 5 0 27 2 no 1.000000 4 1.000000 0.013267 1.000000 46.700000 IGS_071 igs rpl33|rps18 rpl33-rps18 66849 67071 0 223 LSC 0.028401 12 0 41 300 no 1.000000 4 1.000000 0.028401 1.000000 60.100000 rps18 gene rps18 rps18 67072 67377 1 306 LSC 0.000000 0 0 20 4 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_072 igs rps18|rpl20 rps18-rpl20 67378 67668 0 291 LSC 0.024628 12 2 300 18 no 1.000000 4 1.000000 0.024782 0.993127 55.800000 rpl20 gene rpl20 rpl20 67669 68022 -1 354 LSC 0.012241 7 0 9 32 no 0.500000 3 0.666667 0.012241 1.000000 37.900000 IGS_073 igs rpl20|rps12 rpl20-rps12 68023 68785 0 763 LSC 0.017717 25 3 80 36 no 1.000000 4 1.000000 0.017745 0.997379 58.900000 rps12_part1 gene rps12 rps12 68786 68899 -1 114 LSC 0.004386 1 0 37 1 no 0.250000 2 0.500000 0.004386 1.000000 26.600000 IGS_074 igs rps12|clpP rps12-clpP 68900 69083 0 184 LSC 0.044384 15 0 77 9 no 0.500000 3 0.666667 0.044384 1.000000 59.000000 clpP gene clpP clpP 69084 71153 -1 2070 LSC 0.019412 72 38 4 88 no 1.000000 4 1.000000 0.018959 0.986957 57.800000 IGS_075 igs clpP|psbB clpP-psbB 71154 71656 0 503 LSC 0.021462 19 12 98 89 no 1.000000 4 1.000000 0.019285 0.980119 65.100000 psbB gene psbB psbB 71657 73183 1 1527 LSC 0.007095 20 0 26 16 no 1.000000 4 1.000000 0.007095 1.000000 49.700000 IGS_076 igs psbB|psbT psbB-psbT 73184 73372 0 189 LSC 0.007937 3 0 30 56 no 0.500000 3 0.666667 0.007937 1.000000 35.900000 psbT gene psbT psbT 73373 73474 1 102 LSC 0.004902 1 0 90 10 no 0.250000 2 0.500000 0.004902 1.000000 27.600000 IGS_077 igs psbT|psbN psbT-psbN 73475 73539 0 65 LSC 0.010256 1 0 45 119 no 0.000000 2 0.000000 0.010256 1.000000 28.700000 psbN gene psbN psbN 73540 73671 -1 132 LSC 0.003788 1 0 54 7 no 0.250000 2 0.500000 0.003788 1.000000 26.600000 IGS_078 igs psbN|psbH psbN-psbH 73672 73775 0 104 LSC 0.009615 2 0 12 45 no 0.250000 2 0.500000 0.009615 1.000000 31.100000 psbH gene psbH psbH 73776 73997 1 222 LSC 0.017267 6 0 4 32 no 0.500000 3 0.666667 0.017267 1.000000 39.600000 IGS_079 igs psbH|petB psbH-petB 73998 74137 0 140 LSC 0.021583 6 1 9 107 no 1.000000 4 1.000000 0.021583 0.992857 53.900000 petB gene petB petB 74138 75584 1 1447 LSC 0.011057 30 2 23 13 no 1.000000 4 1.000000 0.011067 1.000000 52.500000 IGS_080 igs petB|petD petB-petD 75585 75781 0 197 LSC 0.041455 13 13 57 152 yes 1.000000 4 1.000000 0.044205 0.934010 73.100000 petD gene petD petD 75782 76973 1 1192 LSC 0.010487 23 0 34 2 no 1.000000 4 1.000000 0.010487 1.000000 51.000000 IGS_081 igs petD|rpoA petD-rpoA 76974 77186 0 213 LSC 0.024257 10 10 62 135 no 1.000000 4 1.000000 0.023490 0.957746 63.600000 rpoA gene rpoA rpoA 77187 78170 -1 984 LSC 0.007791 14 1 19 8 no 1.000000 4 1.000000 0.007795 1.000000 49.800000 IGS_082 igs rpoA|rps11 rpoA-rps11 78171 78239 0 69 LSC 0.009662 1 1 71 60 no 0.500000 3 0.666667 0.009733 1.000000 40.500000 rps11 gene rps11 rps11 78240 78656 -1 417 LSC 0.005596 4 0 60 44 no 1.000000 4 1.000000 0.005596 1.000000 47.000000 IGS_083 igs rps11|rpl36 rps11-rpl36 78657 78769 0 113 LSC 0.023599 5 5 13 27 no 1.000000 4 1.000000 0.020922 1.000000 59.800000 rpl36 gene rpl36 rpl36 78770 78883 -1 114 LSC 0.008772 2 0 24 22 no 0.250000 2 0.500000 0.008772 1.000000 31.200000 IGS_084 igs rpl36|rps8 rpl36-rps8 78884 79365 0 482 LSC 0.043022 35 23 62 126 yes 1.000000 4 1.000000 0.042416 0.956432 78.700000 rps8 gene rps8 rps8 79366 79770 -1 405 LSC 0.018107 14 0 5 8 no 1.000000 4 1.000000 0.018107 1.000000 52.500000 IGS_085 igs rps8|rpl14 rps8-rpl14 79771 79985 0 215 LSC 0.032558 11 1 58 78 no 1.000000 4 1.000000 0.028791 0.995349 63.300000 rpl14 gene rpl14 rpl14 79986 80354 -1 369 LSC 0.004517 3 0 11 41 no 1.000000 4 1.000000 0.004517 1.000000 42.800000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 80355 80476 0 122 LSC 0.023224 5 0 131 138 no 1.000000 4 1.000000 0.023224 1.000000 62.900000 rpl16 gene rpl16 rpl16 80477 82016 -1 1540 LSC 0.017384 47 13 3 11 no 1.000000 4 1.000000 0.017439 0.993506 56.400000 IGS_087 igs rpl16|rps3 rpl16-rps3 82017 82191 0 175 LSC 0.025862 8 6 60 6 no 0.500000 3 0.666667 0.026344 0.994286 49.800000 rps3 gene rps3 rps3 82192 82848 -1 657 LSC 0.011923 14 0 9 34 no 1.000000 4 1.000000 0.011923 1.000000 52.500000 rpl22 gene rpl22 rpl22 82833 83315 -1 483 LSC 0.013112 11 0 28 39 no 1.000000 4 1.000000 0.013112 1.000000 52.200000 IGS_089 igs rpl22|rps19 rpl22-rps19 83316 83375 0 60 LSC 0.047222 5 2 11 9 yes 1.000000 4 1.000000 0.048755 0.966667 73.100000 rps19 gene rps19 rps19 83376 83654 -1 279 LSC 0.011947 6 0 1 42 no 1.000000 4 1.000000 0.011947 1.000000 45.600000 IGS_090 igs rps19|rpl2 rps19-rpl2 83655 83707 0 53 IRb 0.012579 1 0 167 7 no 0.000000 2 0.000000 0.012579 1.000000 27.300000 rpl2 gene rpl2 rpl2 83708 85214 -1 1507 IRb 0.002875 7 0 10 131 no 0.500000 3 0.666667 0.002875 1.000000 37.000000 IGS_091 igs rpl2|rpl23 rpl2-rpl23 85215 85232 0 18 IRb 0.000000 0 0 300 113 no 0.000000 1 0.000000 NA 1.000000 27.200000 rpl23 gene rpl23 rpl23 85233 85514 -1 282 IRb 0.001773 1 0 300 4 no 0.250000 2 0.500000 0.001773 1.000000 25.000000 IGS_092 igs rpl23|trnM rpl23-trnM 85515 85681 0 167 IRb 0.005988 2 0 168 300 no 0.500000 3 0.666667 0.005988 1.000000 44.900000 trnM tRNA trnM trnM 85682 85756 -1 75 IRb 0.000000 0 0 74 300 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_093 igs trnM|ycf2 trnM-ycf2 85757 85844 0 88 IRb 0.000000 0 0 149 218 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 ycf2 gene ycf2 ycf2 85845 92687 1 6843 IRb 0.003629 47 57 237 277 no 1.000000 4 1.000000 0.003598 1.000000 56.000000 IGS_094 igs ycf2|orf77 ycf2-orf77 92688 92824 0 137 IRb 0.000000 0 0 89 140 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 orf77 gene orf77 orf77 92825 93058 1 234 IRb 0.004274 2 0 226 30 no 0.500000 3 0.666667 0.004274 1.000000 33.400000 IGS_095 igs orf77|trnL orf77-trnL 93059 93593 0 535 IRb 0.006854 7 0 20 203 no 1.000000 4 1.000000 0.006854 1.000000 48.600000 IGS_096 igs trnL|ndhB trnL-ndhB 93677 94263 0 587 IRb 0.004574 5 6 146 217 no 1.000000 4 1.000000 0.004580 0.993186 58.600000 ndhB gene ndhB ndhB 94264 96118 -1 1855 IRb 0.000809 3 0 110 138 no 0.500000 3 0.666667 0.000809 1.000000 42.500000 IGS_097 igs ndhB|rps7 ndhB-rps7 96119 96801 0 683 IRb 0.002440 3 2 300 77 no 1.000000 4 1.000000 0.002445 1.000000 51.500000 rps7 gene rps7 rps7 96802 97269 -1 468 IRb 0.001068 1 0 226 300 no 0.250000 2 0.500000 0.001068 1.000000 42.700000 IGS_098 igs rps7|trnV rps7-trnV 97270 100028 0 2759 IRb 0.003807 20 1 300 101 no 1.000000 4 1.000000 0.003807 0.999638 51.400000 IGS_099 igs trnV|rrn16S trnV-rrn16S 100101 100331 0 231 IRb 0.006494 3 0 239 300 no 1.000000 4 1.000000 0.006494 1.000000 57.000000 rrn16S rRNA rrn16S rrn16S 100332 101822 1 1491 IRb 0.000447 1 0 66 1 no 0.000000 2 0.000000 0.000447 1.000000 25.400000 IGS_100 igs rrn16S|trnE rrn16S-trnE 101823 102045 0 223 IRb 0.002990 1 0 300 226 no 0.000000 2 0.000000 0.002990 1.000000 35.700000 trnE_part1 tRNA trnE trnE 102046 102077 1 32 IRb 0.000000 0 0 221 194 no 0.000000 1 0.000000 0.000000 1.000000 33.300000 orf133 gene orf133 orf133 102427 102666 1 240 IRb 0.000000 0 0 154 300 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 IGS_103 igs orf133|trnE orf133-trnE 102667 103024 0 358 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 35.000000 trnE_part2 tRNA trnE trnE 103025 103064 1 40 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_104 igs trnE|trnA trnE-trnA 103065 103128 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 103129 103165 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 103965 104000 1 36 IRb 0.000000 0 0 217 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_107 igs trnA|rrn23S trnA-rrn23S 104001 104152 0 152 IRb 0.000000 0 0 253 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 104153 106962 1 2810 IRb 0.000178 1 0 300 300 no 0.250000 2 0.500000 0.000178 1.000000 42.100000 IGS_108 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 106963 107060 0 98 IRb 0.000000 0 0 168 221 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 rrn4.5S rRNA rrn4.5S rrn4.5S 107061 107163 1 103 IRb 0.000000 0 0 266 118 no 0.000000 1 0.000000 0.000000 1.000000 27.600000 IGS_109 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107164 107411 0 248 IRb 0.004032 2 0 300 282 no 0.500000 3 0.666667 0.004032 1.000000 45.900000 rrn5S rRNA rrn5S rrn5S 107412 107532 1 121 IRb 0.000000 0 0 52 161 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_110 igs rrn5S|trnR rrn5S-trnR 107533 107777 0 245 IRb 0.002041 1 0 173 127 no 0.250000 2 0.500000 0.002041 1.000000 34.400000 trnR tRNA trnR trnR 107778 107852 1 75 IRb 0.000000 0 0 83 52 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_111 igs trnR|trnN trnR-trnN 107853 108487 0 635 IRb 0.012275 12 301 158 300 no 1.000000 4 1.000000 0.014516 0.952756 64.800000 trnN tRNA trnN trnN 108488 108561 -1 74 IRb 0.000000 0 0 3 300 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_112 igs trnN|ycf1 trnN-ycf1 108562 108880 0 319 IRb 0.000000 0 0 77 300 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 ycf1 gene ycf1 ycf1 108881 109843 1 963 IRb 0.011423 19 15 300 6 no 1.000000 4 1.000000 0.011191 0.993769 53.500000 ndhF gene ndhF ndhF 109805 112045 -1 2241 SSC 0.015618 65 0 3 29 no 1.000000 4 1.000000 0.015618 1.000000 53.100000 IGS_114 igs ndhF|rpl32 ndhF-rpl32 112046 112956 0 911 SSC 0.047507 72 86 104 11 yes 1.000000 4 1.000000 0.046590 0.928650 79.400000 rpl32 gene rpl32 rpl32 112957 113115 1 159 SSC 0.020430 6 4 65 13 no 1.000000 4 1.000000 0.020430 0.974843 54.600000 IGS_115 igs rpl32|trnL rpl32-trnL 113116 114072 0 957 SSC 0.050655 84 46 3 128 yes 1.000000 4 1.000000 0.049902 0.978056 82.500000 IGS_116 igs trnL|ycf5 trnL-ycf5 114155 114270 0 116 SSC 0.015015 3 5 130 13 no 0.500000 3 0.666667 0.015015 0.956897 42.900000 ycf5 gene ycf5 ycf5 114271 115257 1 987 SSC 0.015736 29 2 34 11 no 1.000000 4 1.000000 0.015736 0.997974 55.500000 IGS_117 igs ycf5|ndhD ycf5-ndhD 115258 115478 0 221 SSC 0.019878 8 14 6 84 no 1.000000 4 1.000000 0.020652 0.941176 55.900000 ndhD gene ndhD ndhD 115479 116999 -1 1521 SSC 0.012492 36 0 12 5 no 1.000000 4 1.000000 0.012492 1.000000 52.700000 IGS_118 igs ndhD|psaC ndhD-psaC 117000 117135 0 136 SSC 0.030864 8 1 89 21 no 1.000000 4 1.000000 0.030864 0.992647 61.000000 psaC gene psaC psaC 117136 117381 -1 246 SSC 0.006775 3 0 28 13 no 0.500000 3 0.666667 0.006775 1.000000 33.700000 IGS_119 igs psaC|ndhE psaC-ndhE 117382 117621 0 240 SSC 0.021008 9 3 161 93 no 1.000000 4 1.000000 0.021085 0.987500 59.800000 ndhE gene ndhE ndhE 117622 117927 -1 306 SSC 0.003268 2 0 9 3 no 0.250000 2 0.500000 0.003268 1.000000 26.100000 IGS_120 igs ndhE|ndhG ndhE-ndhG 117928 118092 0 165 SSC 0.026263 8 0 108 78 no 1.000000 4 1.000000 0.026263 1.000000 61.200000 ndhG gene ndhG ndhG 118093 118623 -1 531 SSC 0.009416 9 0 15 25 no 0.500000 3 0.666667 0.009416 1.000000 40.400000 IGS_121 igs ndhG|ndhI ndhG-ndhI 118624 118964 0 341 SSC 0.034907 22 3 49 33 no 1.000000 4 1.000000 0.034989 0.991202 65.400000 ndhI gene ndhI ndhI 118965 119468 -1 504 SSC 0.008929 8 0 10 15 no 0.500000 3 0.666667 0.008929 1.000000 39.100000 IGS_122 igs ndhI|ndhA ndhI-ndhA 119469 119556 0 88 SSC 0.011905 2 4 12 3 no 0.250000 2 0.500000 0.011905 0.954545 35.900000 ndhA gene ndhA ndhA 119557 121716 -1 2160 SSC 0.018141 71 20 59 112 no 1.000000 4 1.000000 0.017543 0.996296 60.100000 IGS_123 igs ndhA|ndhH ndhA-ndhH 121717 121717 0 1 SSC 0.000000 0 0 29 111 no 0.000000 1 0.000000 NA 1.000000 20.900000 ndhH gene ndhH ndhH 121718 122899 -1 1182 SSC 0.008460 18 0 30 90 no 1.000000 4 1.000000 0.008460 1.000000 51.700000 IGS_124 igs ndhH|rps15 ndhH-rps15 122900 123001 0 102 SSC 0.011438 2 0 7 143 no 0.500000 3 0.666667 0.011438 1.000000 36.200000 rps15 gene rps15 rps15 123002 123268 -1 267 SSC 0.004370 2 0 4 41 no 0.500000 3 0.666667 0.004370 1.000000 31.300000 IGS_125 igs rps15|ycf1 rps15-ycf1 123269 123603 0 335 SSC 0.042564 24 40 122 11 no 1.000000 4 1.000000 0.043756 0.889552 70.000000 ycf1 gene ycf1 ycf1 123604 128802 -1 5199 SSC 0.059362 548 72 1 300 yes 1.000000 4 1.000000 0.059127 0.991344 74.000000 IGS_126 igs ycf1|trnN ycf1-trnN 128803 129121 0 319 IRa 0.000000 0 0 300 77 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 trnN tRNA trnN trnN 129122 129195 1 74 IRa 0.000000 0 0 300 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_127 igs trnN|trnR trnN-trnR 129196 129830 0 635 IRa 0.007638 8 306 300 158 no 1.000000 4 1.000000 0.009838 0.960630 62.000000 trnR tRNA trnR trnR 129831 129905 -1 75 IRa 0.000000 0 0 52 83 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_128 igs trnR|rrn5S trnR-rrn5S 129906 130150 0 245 IRa 0.002041 1 0 127 173 no 0.250000 2 0.500000 0.002041 1.000000 34.400000 rrn5S rRNA rrn5S rrn5S 130151 130271 -1 121 IRa 0.000000 0 0 161 52 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_129 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130272 130519 0 248 IRa 0.004032 2 0 282 300 no 0.500000 3 0.666667 0.004032 1.000000 45.900000 rrn4.5S rRNA rrn4.5S rrn4.5S 130520 130622 -1 103 IRa 0.000000 0 0 118 266 no 0.000000 1 0.000000 0.000000 1.000000 27.600000 IGS_130 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 130623 130720 0 98 IRa 0.000000 0 0 221 168 no 0.000000 1 0.000000 0.000000 1.000000 31.400000 rrn23S rRNA rrn23S rrn23S 130721 133530 -1 2810 IRa 0.000178 1 0 300 300 no 0.250000 2 0.500000 0.000178 1.000000 42.100000 IGS_131 igs rrn23S|trnA rrn23S-trnA 133531 133682 0 152 IRa 0.000000 0 0 300 253 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 133683 133718 -1 36 IRa 0.000000 0 0 300 217 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 134518 134554 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnA|trnE trnA-trnE 134555 134618 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnE_part2 tRNA trnE trnE 134619 134658 -1 40 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 orf133 gene orf133 orf133 135017 135256 -1 240 IRa 0.000000 0 0 300 154 no 0.000000 1 0.000000 0.000000 1.000000 30.300000 IGS_137 igs orf133|trnE orf133-trnE 135257 135605 0 349 IRa 0.001433 1 0 300 253 no 0.250000 2 0.500000 0.001433 1.000000 40.500000 trnE_part1 tRNA trnE trnE 135606 135637 -1 32 IRa 0.000000 0 0 194 221 no 0.000000 1 0.000000 0.000000 1.000000 33.300000 IGS_138 igs trnE|rrn16S trnE-rrn16S 135638 135860 0 223 IRa 0.002990 1 0 226 300 no 0.000000 2 0.000000 0.002990 1.000000 35.700000 rrn16S rRNA rrn16S rrn16S 135861 137351 -1 1491 IRa 0.000447 1 0 1 66 no 0.000000 2 0.000000 0.000447 1.000000 25.400000 IGS_139 igs rrn16S|trnV rrn16S-trnV 137352 137582 0 231 IRa 0.006494 3 0 300 239 no 1.000000 4 1.000000 0.006494 1.000000 57.000000 IGS_140 igs trnV|rps12 trnV-rps12 137655 139565 0 1911 IRa 0.005497 20 1 101 300 no 1.000000 4 1.000000 0.005497 0.999477 54.300000 rps12_part2 gene rps12 rps12 139566 140360 1 795 IRa 0.000000 0 0 31 300 no 0.000000 1 0.000000 0.000000 1.000000 27.300000 IGS_141 igs rps12|rps7 rps12-rps7 140361 140413 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 140414 140881 1 468 IRa 0.001068 1 0 300 226 no 0.250000 2 0.500000 0.001068 1.000000 42.700000 IGS_142 igs rps7|ndhB rps7-ndhB 140882 141564 0 683 IRa 0.002440 3 2 77 300 no 1.000000 4 1.000000 0.002445 1.000000 51.500000 ndhB gene ndhB ndhB 141565 143419 1 1855 IRa 0.000809 3 0 138 110 no 0.500000 3 0.666667 0.000809 1.000000 42.500000 IGS_143 igs ndhB|trnL ndhB-trnL 143420 144006 0 587 IRa 0.004574 5 6 217 146 no 1.000000 4 1.000000 0.004580 0.993186 58.600000 IGS_144 igs trnL|orf77 trnL-orf77 144090 144624 0 535 IRa 0.006854 7 0 203 20 no 1.000000 4 1.000000 0.006854 1.000000 48.600000 orf77 gene orf77 orf77 144625 144858 -1 234 IRa 0.004274 2 0 30 226 no 0.500000 3 0.666667 0.004274 1.000000 33.400000 IGS_145 igs orf77|ycf2 orf77-ycf2 144859 144995 0 137 IRa 0.000000 0 0 140 89 no 0.000000 1 0.000000 0.000000 1.000000 25.400000 ycf2 gene ycf2 ycf2 144996 151838 -1 6843 IRa 0.003629 47 57 277 237 no 1.000000 4 1.000000 0.003598 1.000000 56.000000 IGS_146 igs ycf2|trnM ycf2-trnM 151839 151926 0 88 IRa 0.000000 0 0 218 149 no 0.000000 1 0.000000 0.000000 1.000000 29.900000 trnM tRNA trnM trnM 151927 152001 1 75 IRa 0.000000 0 0 300 74 no 0.000000 1 0.000000 0.000000 1.000000 24.300000 IGS_147 igs trnM|rpl23 trnM-rpl23 152002 152168 0 167 IRa 0.005988 2 0 300 168 no 0.500000 3 0.666667 0.005988 1.000000 44.900000 rpl23 gene rpl23 rpl23 152169 152450 1 282 IRa 0.001773 1 0 4 300 no 0.250000 2 0.500000 0.001773 1.000000 25.000000 IGS_148 igs rpl23|rpl2 rpl23-rpl2 152451 152468 0 18 IRa 0.000000 0 0 113 300 no 0.000000 1 0.000000 NA 1.000000 27.200000 rpl2 gene rpl2 rpl2 152469 153975 1 1507 IRa 0.002875 7 0 131 10 no 0.500000 3 0.666667 0.002875 1.000000 37.000000 IGS_149 igs rpl2|trnH rpl2-trnH 153976 154138 0 163 IRa 0.004090 3728 2195 7 50 no 1.000000 4 1.000000 0.013268 0.993072 58.300000