feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 14 88 -1 75 LSC 0.013333 1 0 300 5 no 1.000000 2 1.000000 NA 1.000000 45.500000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 89 431 0 343 LSC 0.020958 7 9 45 300 no 1.000000 2 1.000000 NA 0.973761 56.300000 psbA gene psbA psbA 432 1493 -1 1062 LSC 0.003766 4 0 113 68 no 1.000000 2 1.000000 NA 1.000000 51.000000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1494 1754 0 261 LSC 0.019157 5 0 119 65 no 1.000000 2 1.000000 NA 1.000000 53.400000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1755 1783 -1 29 LSC 0.000000 0 0 19 36 no 0.000000 1 0.000000 NA 1.000000 20.200000 matK gene matK matK 2097 3596 -1 1500 LSC 0.013333 20 0 6 4 no 1.000000 2 1.000000 NA 1.000000 51.700000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3597 4314 0 718 LSC 0.018156 13 2 13 11 no 1.000000 2 1.000000 NA 0.997214 55.300000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4315 4351 -1 37 LSC 0.027027 1 0 9 9 no 1.000000 2 1.000000 NA 1.000000 53.700000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4352 5209 0 858 LSC 0.025882 22 8 25 173 no 1.000000 2 1.000000 NA 0.990676 61.400000 rps16 gene rps16 rps16 5210 6349 -1 1140 LSC 0.007227 8 33 22 18 no 1.000000 2 1.000000 NA 0.971053 52.000000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6350 6948 0 599 LSC 0.038917 23 8 145 104 yes 1.000000 2 1.000000 NA 0.986644 75.100000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 6949 7020 -1 72 LSC 0.000000 0 0 147 32 no 0.000000 1 0.000000 NA 1.000000 21.100000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 7021 7531 0 511 LSC 0.015419 7 57 219 3 no 1.000000 2 1.000000 NA 0.888454 53.900000 psbK gene psbK psbK 7532 7717 1 186 LSC 0.010753 2 0 113 4 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_009 igs psbK|trnS-GCU psbK-trnS-GCU 7718 8412 0 695 LSC 0.042151 29 7 53 136 yes 1.000000 2 1.000000 NA 0.989928 72.900000 trnS-GCU tRNA trnS-GCU trnS-GCU 8413 8500 -1 88 LSC 0.000000 0 0 30 48 no 0.000000 1 0.000000 NA 1.000000 21.000000 IGS_010 igs trnS-GCU|trnG-GCC trnS-GCU-trnG-GCC 8501 9155 0 655 LSC 0.057187 37 8 118 40 yes 1.000000 2 1.000000 NA 0.987786 77.500000 trnG-GCC_part1 tRNA trnG-GCC trnG-GCC 9156 9178 1 23 LSC 0.000000 0 0 123 17 no 0.000000 1 0.000000 NA 1.000000 20.000000 trnG-GCC_part2 tRNA trnG-GCC trnG-GCC 9873 9921 1 49 LSC 0.020408 1 0 141 29 no 1.000000 2 1.000000 NA 1.000000 51.400000 IGS_013 igs trnG-GCC|trnR-UCU trnG-GCC-trnR-UCU 9922 10246 0 325 LSC 0.027027 8 29 46 189 no 1.000000 2 1.000000 NA 0.910769 60.500000 trnR-UCU tRNA trnR-UCU trnR-UCU 10247 10318 1 72 LSC 0.000000 0 0 40 117 no 0.000000 1 0.000000 NA 1.000000 21.800000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 10319 10629 0 311 LSC 0.022581 7 1 112 97 no 1.000000 2 1.000000 NA 0.996785 58.300000 atpA gene atpA atpA 10630 12162 -1 1533 LSC 0.006523 10 0 13 26 no 1.000000 2 1.000000 NA 1.000000 48.400000 IGS_015 igs atpA|atpF atpA-atpF 12163 12226 0 64 LSC 0.016129 1 2 53 146 no 1.000000 2 1.000000 NA 0.968750 53.700000 atpF gene atpF atpF 12227 13498 -1 1272 LSC 0.009509 12 10 37 78 no 1.000000 2 1.000000 NA 0.992138 52.700000 IGS_016 igs atpF|atpH atpF-atpH 13499 14066 0 568 LSC 0.040146 22 20 110 228 yes 1.000000 2 1.000000 NA 0.964789 77.700000 atpH gene atpH atpH 14067 14312 -1 246 LSC 0.004065 1 0 13 51 no 1.000000 2 1.000000 NA 1.000000 40.800000 IGS_017 igs atpH|atpI atpH-atpI 14313 15011 0 699 LSC 0.014306 10 0 17 300 no 1.000000 2 1.000000 NA 1.000000 53.300000 atpI gene atpI atpI 15012 15755 -1 744 LSC 0.002688 2 0 14 94 no 1.000000 2 1.000000 NA 1.000000 46.300000 IGS_018 igs atpI|rps2 atpI-rps2 15756 15970 0 215 LSC 0.013953 3 0 94 210 no 1.000000 2 1.000000 NA 1.000000 52.600000 rps2 gene rps2 rps2 15971 16681 -1 711 LSC 0.005626 4 0 16 43 no 1.000000 2 1.000000 NA 1.000000 48.200000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 16682 16908 0 227 LSC 0.018868 4 15 144 195 no 1.000000 2 1.000000 NA 0.933921 63.400000 rpoC2 gene rpoC2 rpoC2 16909 21096 -1 4188 LSC 0.009100 38 12 4 16 no 1.000000 2 1.000000 NA 0.997135 44.600000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 21097 21282 0 186 LSC 0.005376 1 0 239 300 no 1.000000 2 1.000000 NA 1.000000 55.600000 rpoC1 gene rpoC1 rpoC1 21283 24115 -1 2833 LSC 0.009568 27 11 169 300 no 1.000000 2 1.000000 NA 0.996117 59.500000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 24116 24141 0 26 LSC 0.000000 0 0 73 300 no 0.000000 1 0.000000 NA 1.000000 24.200000 rpoB gene rpoB rpoB 24142 27354 -1 3213 LSC 0.004980 16 0 99 29 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 27355 28550 0 1196 LSC 0.015152 18 8 77 15 no 1.000000 2 1.000000 NA 0.993311 54.200000 trnC-GCA tRNA trnC-GCA trnC-GCA 28551 28631 1 81 LSC 0.012346 1 0 58 300 no 1.000000 2 1.000000 NA 1.000000 48.900000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 28632 29722 0 1091 LSC 0.011142 12 14 65 13 no 1.000000 2 1.000000 NA 0.987168 52.400000 petN gene petN petN 29723 29812 1 90 LSC 0.022222 2 0 300 0 no 1.000000 2 1.000000 NA 1.000000 50.300000 IGS_024 igs petN|psbM petN-psbM 29813 31029 0 1217 LSC 0.015139 18 28 69 21 no 1.000000 2 1.000000 NA 0.976993 56.200000 psbM gene psbM psbM 31030 31140 -1 111 LSC 0.019048 2 6 59 72 no 1.000000 2 1.000000 NA 0.945946 57.500000 IGS_025 igs psbM|trnY-GUA psbM-trnY-GUA 31141 32511 0 1371 LSC 0.015015 20 39 87 300 no 1.000000 2 1.000000 NA 0.971554 61.600000 trnY-GUA tRNA trnY-GUA trnY-GUA 32512 32595 -1 84 LSC 0.000000 0 0 54 264 no 0.000000 1 0.000000 NA 1.000000 22.800000 IGS_026 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 32596 32656 0 61 LSC 0.000000 0 1 138 203 no 1.000000 2 1.000000 NA 0.983607 49.400000 trnE-UUC tRNA trnE-UUC trnE-UUC 32657 32729 -1 73 LSC 0.000000 0 0 199 130 no 0.000000 1 0.000000 NA 1.000000 28.500000 IGS_027 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 32730 33527 0 798 LSC 0.015464 12 22 272 66 no 1.000000 2 1.000000 NA 0.972431 60.200000 trnT-GGU tRNA trnT-GGU trnT-GGU 33528 33599 1 72 LSC 0.013889 1 0 31 227 no 1.000000 2 1.000000 NA 1.000000 47.800000 IGS_028 igs trnT-GGU|psbD trnT-GGU-psbD 33600 35064 0 1465 LSC 0.011938 17 41 5 74 no 1.000000 2 1.000000 NA 0.972014 53.700000 psbD gene psbD psbD 35065 36126 1 1062 LSC 0.001883 2 0 147 39 no 1.000000 2 1.000000 NA 1.000000 47.800000 psbC gene psbC psbC 36074 37495 1 1422 LSC 0.002813 4 0 300 225 no 1.000000 2 1.000000 NA 1.000000 60.400000 IGS_030 igs psbC|trnS-UGA psbC-trnS-UGA 37496 37736 0 241 LSC 0.004184 1 2 300 77 no 1.000000 2 1.000000 NA 0.991701 46.500000 trnS-UGA tRNA trnS-UGA trnS-UGA 37737 37829 -1 93 LSC 0.010753 1 0 15 101 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_031 igs trnS-UGA|psbZ trnS-UGA-psbZ 37830 38151 0 322 LSC 0.021944 7 3 15 14 no 1.000000 2 1.000000 NA 0.990683 52.500000 psbZ gene psbZ psbZ 38152 38340 1 189 LSC 0.010582 2 0 21 39 no 1.000000 2 1.000000 NA 1.000000 45.200000 IGS_032 igs psbZ|trnG-UCC psbZ-trnG-UCC 38341 38731 0 391 LSC 0.126374 46 27 99 119 yes 1.000000 2 1.000000 NA 0.930946 86.100000 trnG-UCC tRNA trnG-UCC trnG-UCC 38732 38802 1 71 LSC 0.000000 0 0 11 48 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_033 igs trnG-UCC|trnfM-CAU trnG-UCC-trnfM-CAU 38803 38984 0 182 LSC 0.016575 3 1 82 121 no 1.000000 2 1.000000 NA 0.994505 53.700000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 38985 39058 -1 74 LSC 0.000000 0 0 11 47 no 0.000000 1 0.000000 NA 1.000000 19.600000 IGS_034 igs trnfM-CAU|rps14 trnfM-CAU-rps14 39059 39220 0 162 LSC 0.006173 1 0 85 217 no 1.000000 2 1.000000 NA 1.000000 47.400000 rps14 gene rps14 rps14 39221 39523 -1 303 LSC 0.003300 1 0 114 69 no 1.000000 2 1.000000 NA 1.000000 44.600000 IGS_035 igs rps14|psaB rps14-psaB 39524 39641 0 118 LSC 0.017857 2 6 85 114 no 1.000000 2 1.000000 NA 0.949153 58.800000 psaB gene psaB psaB 39642 41846 -1 2205 LSC 0.003175 7 0 16 300 no 1.000000 2 1.000000 NA 1.000000 45.300000 IGS_036 igs psaB|psaA psaB-psaA 41847 41871 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psaA gene psaA psaA 41872 44124 -1 2253 LSC 0.002663 6 0 300 179 no 1.000000 2 1.000000 NA 1.000000 57.100000 IGS_037 igs psaA|ycf3 psaA-ycf3 44125 44837 0 713 LSC 0.011220 8 0 41 206 no 1.000000 2 1.000000 NA 1.000000 53.300000 ycf3 gene ycf3 ycf3 44838 46861 -1 2024 LSC 0.003974 8 11 27 300 no 1.000000 2 1.000000 NA 0.994565 47.500000 IGS_038 igs ycf3|trnS-GCU ycf3-trnS-GCU 46862 47125 0 264 LSC 0.000000 0 1 98 107 no 1.000000 2 1.000000 NA 0.996212 45.200000 trnS-GCU tRNA trnS-GCU trnS-GCU 47126 47213 1 88 LSC 0.000000 0 0 300 19 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_039 igs trnS-GCU|rps4 trnS-GCU-rps4 47214 47511 0 298 LSC 0.027491 8 7 300 52 no 1.000000 2 1.000000 NA 0.976510 59.400000 rps4 gene rps4 rps4 47512 48117 -1 606 LSC 0.006601 4 0 79 172 no 1.000000 2 1.000000 NA 1.000000 53.500000 IGS_040 igs rps4|trnT-UGU rps4-trnT-UGU 48118 48474 0 357 LSC 0.005650 2 3 47 92 no 1.000000 2 1.000000 NA 0.991597 46.300000 trnT-UGU tRNA trnT-UGU trnT-UGU 48475 48547 -1 73 LSC 0.000000 0 0 119 19 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_041 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 48548 50009 0 1462 LSC 0.025197 32 192 192 61 yes 1.000000 2 1.000000 NA 0.868673 65.000000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 50010 50046 1 37 LSC 0.000000 0 0 108 24 no 0.000000 1 0.000000 NA 1.000000 20.600000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 50590 50639 1 50 LSC 0.000000 0 0 94 38 no 0.000000 1 0.000000 NA 1.000000 21.600000 IGS_044 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 50640 51053 0 414 LSC 0.017032 7 3 144 231 no 1.000000 2 1.000000 NA 0.992754 61.200000 trnF-GAA tRNA trnF-GAA trnF-GAA 51054 51126 1 73 LSC 0.000000 0 0 125 158 no 0.000000 1 0.000000 NA 1.000000 28.100000 IGS_045 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 51127 51861 0 735 LSC 0.013774 10 9 198 174 yes 1.000000 2 1.000000 NA 0.987755 65.900000 ndhJ gene ndhJ ndhJ 51862 52338 -1 477 LSC 0.004202 2 1 47 195 no 1.000000 2 1.000000 NA 0.997904 47.300000 IGS_046 igs ndhJ|ndhK ndhJ-ndhK 52339 52460 0 122 LSC 0.000000 0 12 167 73 no 1.000000 2 1.000000 NA 0.901639 46.500000 ndhK gene ndhK ndhK 52461 53189 -1 729 LSC 0.006859 5 0 289 79 no 1.000000 2 1.000000 NA 1.000000 53.600000 ndhC gene ndhC ndhC 53180 53542 -1 363 LSC 0.005510 2 0 36 20 no 1.000000 2 1.000000 NA 1.000000 43.500000 IGS_048 igs ndhC|trnV-UAC ndhC-trnV-UAC 53543 54251 0 709 LSC 0.034091 24 5 174 28 yes 1.000000 2 1.000000 NA 0.992948 66.100000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 54252 54288 -1 37 LSC 0.027027 1 0 5 98 no 1.000000 2 1.000000 NA 1.000000 53.400000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 54890 54928 -1 39 LSC 0.000000 0 0 59 300 no 0.000000 1 0.000000 NA 1.000000 23.200000 IGS_051 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 54929 55089 0 161 LSC 0.000000 0 0 98 201 no 0.000000 1 0.000000 NA 1.000000 26.100000 trnM-CAU tRNA trnM-CAU trnM-CAU 55090 55158 1 69 LSC 0.000000 0 0 259 132 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_052 igs trnM-CAU|atpE trnM-CAU-atpE 55159 55439 0 281 LSC 0.007117 2 0 300 27 no 1.000000 2 1.000000 NA 1.000000 43.600000 atpE gene atpE atpE 55440 55841 -1 402 LSC 0.004975 2 0 88 266 no 1.000000 2 1.000000 NA 1.000000 49.100000 atpB gene atpB atpB 55838 57334 -1 1497 LSC 0.002004 3 0 216 102 no 1.000000 2 1.000000 NA 1.000000 52.600000 IGS_054 igs atpB|rbcL atpB-rbcL 57335 58092 0 758 LSC 0.006623 5 3 105 83 no 1.000000 2 1.000000 NA 0.996042 54.200000 rbcL gene rbcL rbcL 58093 59520 1 1428 LSC 0.003501 5 0 243 100 no 1.000000 2 1.000000 NA 1.000000 53.300000 IGS_055 igs rbcL|accD rbcL-accD 59521 60447 0 927 LSC 0.026637 24 26 47 165 yes 1.000000 2 1.000000 NA 0.971953 65.200000 accD gene accD accD 60448 61938 1 1491 LSC 0.005366 8 0 184 42 no 1.000000 2 1.000000 NA 1.000000 50.000000 IGS_056 igs accD|psaI accD-psaI 61939 62229 0 291 LSC 0.024055 7 0 56 130 no 1.000000 2 1.000000 NA 1.000000 55.500000 psaI gene psaI psaI 62230 62343 1 114 LSC 0.000000 0 0 119 16 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_057 igs psaI|ycf4 psaI-ycf4 62344 62533 0 190 LSC 0.015789 3 0 233 30 no 1.000000 2 1.000000 NA 1.000000 48.800000 ycf4 gene ycf4 ycf4 62534 63088 1 555 LSC 0.005405 3 0 24 287 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_058 igs ycf4|cemA ycf4-cemA 63089 63544 0 456 LSC 0.002198 1 1 111 4 no 1.000000 2 1.000000 NA 0.997807 42.500000 cemA gene cemA cemA 63545 64234 1 690 LSC 0.015942 11 0 168 53 no 1.000000 2 1.000000 NA 1.000000 56.900000 IGS_059 igs cemA|petA cemA-petA 64235 64440 0 206 LSC 0.024272 5 0 117 26 no 1.000000 2 1.000000 NA 1.000000 53.400000 petA gene petA petA 64441 65403 1 963 LSC 0.007269 7 0 94 87 no 1.000000 2 1.000000 NA 1.000000 54.500000 IGS_060 igs petA|psbJ petA-psbJ 65404 66557 0 1154 LSC 0.009574 11 5 105 192 no 1.000000 2 1.000000 NA 0.995667 57.500000 psbJ gene psbJ psbJ 66558 66680 -1 123 LSC 0.000000 0 0 42 69 no 0.000000 1 0.000000 NA 1.000000 21.900000 IGS_061 igs psbJ|psbF psbJ-psbF 66681 66945 0 265 LSC 0.007547 2 0 165 42 no 1.000000 2 1.000000 NA 1.000000 45.000000 psbF gene psbF psbF 66946 67065 -1 120 LSC 0.008333 1 0 120 60 no 1.000000 2 1.000000 NA 1.000000 46.800000 IGS_062 igs psbF|psbE psbF-psbE 67066 67074 0 9 LSC 0.000000 0 0 77 51 no 0.000000 1 0.000000 NA 1.000000 22.600000 psbE gene psbE psbE 67075 67326 -1 252 LSC 0.003968 1 0 86 180 no 1.000000 2 1.000000 NA 1.000000 46.200000 IGS_063 igs psbE|petL psbE-petL 67327 68186 0 860 LSC 0.011779 10 11 200 168 yes 1.000000 2 1.000000 NA 0.987209 64.300000 petL gene petL petL 68187 68282 1 96 LSC 0.000000 0 0 21 72 no 0.000000 1 0.000000 NA 1.000000 20.300000 IGS_064 igs petL|petG petL-petG 68283 68467 0 185 LSC 0.005405 1 0 117 170 no 1.000000 2 1.000000 NA 1.000000 49.400000 petG gene petG petG 68468 68581 1 114 LSC 0.000000 0 0 112 56 no 0.000000 1 0.000000 NA 1.000000 22.900000 IGS_065 igs petG|trnW-CCA petG-trnW-CCA 68582 68715 0 134 LSC 0.029851 4 0 226 86 no 1.000000 2 1.000000 NA 1.000000 61.100000 trnW-CCA tRNA trnW-CCA trnW-CCA 68716 68787 -1 72 LSC 0.000000 0 0 34 14 no 0.000000 1 0.000000 NA 1.000000 19.800000 IGS_066 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 68788 68971 0 184 LSC 0.027174 5 0 106 82 no 1.000000 2 1.000000 NA 1.000000 59.300000 trnP-UGG tRNA trnP-UGG trnP-UGG 68972 69045 -1 74 LSC 0.000000 0 0 2 8 no 0.000000 1 0.000000 NA 1.000000 18.900000 IGS_067 igs trnP-UGG|psaJ trnP-UGG-psaJ 69046 69465 0 420 LSC 0.031100 13 2 76 281 yes 1.000000 2 1.000000 NA 0.995238 64.000000 psaJ gene psaJ psaJ 69466 69600 1 135 LSC 0.000000 0 0 17 146 no 0.000000 1 0.000000 NA 1.000000 20.000000 IGS_068 igs psaJ|rpl33 psaJ-rpl33 69601 70106 0 506 LSC 0.015810 8 0 152 22 no 1.000000 2 1.000000 NA 1.000000 52.500000 rpl33 gene rpl33 rpl33 70107 70307 1 201 LSC 0.009950 2 0 98 47 no 1.000000 2 1.000000 NA 1.000000 46.700000 IGS_069 igs rpl33|rps18 rpl33-rps18 70308 70511 0 204 LSC 0.029412 6 0 151 20 no 1.000000 2 1.000000 NA 1.000000 55.900000 rps18 gene rps18 rps18 70512 70814 1 303 LSC 0.009901 3 0 22 20 no 1.000000 2 1.000000 NA 1.000000 44.800000 IGS_070 igs rps18|rpl20 rps18-rpl20 70815 71059 0 245 LSC 0.016529 4 3 44 88 no 1.000000 2 1.000000 NA 0.987755 51.500000 rpl20 gene rpl20 rpl20 71060 71419 -1 360 LSC 0.014006 5 3 107 118 no 1.000000 2 1.000000 NA 0.991667 55.600000 IGS_071 igs rpl20|rps12 rpl20-rps12 71420 72180 0 761 LSC 0.010610 8 7 153 300 no 1.000000 2 1.000000 NA 0.990802 62.200000 rps12_part1 gene rps12 rps12 72181 72318 -1 138 LSC 0.000000 0 0 72 300 no 0.000000 1 0.000000 NA 1.000000 24.100000 IGS_072 igs rps12|clpP rps12-clpP 72319 72494 0 176 LSC 0.000000 0 16 210 265 no 1.000000 2 1.000000 NA 0.909091 56.200000 clpP gene clpP clpP 72495 74480 -1 1986 LSC 0.006592 13 14 300 135 no 1.000000 2 1.000000 NA 0.992951 57.300000 IGS_073 igs clpP|psbB clpP-psbB 74481 74959 0 479 LSC 0.008351 4 0 191 29 no 1.000000 2 1.000000 NA 1.000000 48.200000 psbB gene psbB psbB 74960 76486 1 1527 LSC 0.001310 2 0 154 300 no 1.000000 2 1.000000 NA 1.000000 56.000000 IGS_074 igs psbB|psbT psbB-psbT 76487 76675 0 189 LSC 0.000000 0 0 216 162 no 0.000000 1 0.000000 NA 1.000000 30.900000 psbT gene psbT psbT 76676 76783 1 108 LSC 0.000000 0 0 300 54 no 0.000000 1 0.000000 NA 1.000000 22.800000 IGS_075 igs psbT|psbN psbT-psbN 76784 76843 0 60 LSC 0.016667 1 0 300 208 no 1.000000 2 1.000000 NA 1.000000 62.100000 psbN gene psbN psbN 76844 76975 -1 132 LSC 0.000000 0 0 5 76 no 0.000000 1 0.000000 NA 1.000000 19.100000 IGS_076 igs psbN|psbH psbN-psbH 76976 77079 0 104 LSC 0.009615 1 0 137 288 no 1.000000 2 1.000000 NA 1.000000 53.300000 psbH gene psbH psbH 77080 77301 1 222 LSC 0.000000 0 0 27 66 no 0.000000 1 0.000000 NA 1.000000 20.800000 IGS_077 igs psbH|petB psbH-petB 77302 77428 0 127 LSC 0.015748 2 0 249 23 no 1.000000 2 1.000000 NA 1.000000 48.300000 petB gene petB petB 77429 78894 1 1466 LSC 0.008236 12 9 22 300 no 1.000000 2 1.000000 NA 0.993861 50.700000 IGS_078 igs petB|petD petB-petD 78895 79098 0 204 LSC 0.000000 0 0 204 148 no 0.000000 1 0.000000 NA 1.000000 29.800000 petD gene petD petD 79099 80287 1 1189 LSC 0.006728 8 0 300 29 no 1.000000 2 1.000000 NA 1.000000 49.800000 IGS_079 igs petD|rpoA petD-rpoA 80288 80475 0 188 LSC 0.015957 3 0 300 40 no 1.000000 2 1.000000 NA 1.000000 49.700000 rpoA gene rpoA rpoA 80476 81471 -1 996 LSC 0.010040 10 0 90 6 no 1.000000 2 1.000000 NA 1.000000 50.000000 IGS_080 igs rpoA|rps11 rpoA-rps11 81472 81542 0 71 LSC 0.028169 2 0 47 21 no 1.000000 2 1.000000 NA 1.000000 55.300000 rps11 gene rps11 rps11 81543 81959 -1 417 LSC 0.004796 2 0 13 79 no 1.000000 2 1.000000 NA 1.000000 43.700000 IGS_081 igs rps11|rpl36 rps11-rpl36 81960 82112 0 153 LSC 0.045752 7 0 64 186 yes 1.000000 2 1.000000 NA 1.000000 68.600000 rpl36 gene rpl36 rpl36 82113 82226 -1 114 LSC 0.000000 0 0 20 72 no 0.000000 1 0.000000 NA 1.000000 20.200000 IGS_082 igs rpl36|rps8 rpl36-rps8 82227 82708 0 482 LSC 0.020747 10 0 134 123 no 1.000000 2 1.000000 NA 1.000000 62.400000 rps8 gene rps8 rps8 82709 83113 -1 405 LSC 0.009877 4 0 23 13 no 1.000000 2 1.000000 NA 1.000000 46.300000 IGS_083 igs rps8|rpl14 rps8-rpl14 83114 83347 0 234 LSC 0.056522 13 4 14 198 yes 1.000000 2 1.000000 NA 0.982906 69.700000 rpl14 gene rpl14 rpl14 83348 83716 -1 369 LSC 0.008130 3 0 5 87 no 1.000000 2 1.000000 NA 1.000000 44.000000 IGS_084 igs rpl14|rpl16 rpl14-rpl16 83717 83863 0 147 LSC 0.014493 2 9 44 300 no 1.000000 2 1.000000 NA 0.938776 53.600000 rpl16 gene rpl16 rpl16 83864 85349 -1 1486 LSC 0.005424 8 11 54 34 no 1.000000 2 1.000000 NA 0.992598 50.100000 IGS_085 igs rpl16|rps19 rpl16-rps19 85350 86774 0 1425 LSC 0.014265 20 23 134 9 no 1.000000 2 1.000000 NA 0.983860 54.200000 rps19 gene rps19 rps19 86775 87053 -1 279 LSC 0.010753 3 0 44 300 no 1.000000 2 1.000000 NA 1.000000 47.000000 IGS_086 igs rps19|rpl2 rps19-rpl2 87054 87138 0 85 IRb 0.000000 0 24 233 300 no 1.000000 2 1.000000 NA 0.717647 50.800000 rpl2 gene rpl2 rpl2 87139 88639 -1 1501 IRb 0.001332 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.500000 IGS_087 igs rpl2|rpl23 rpl2-rpl23 88640 88657 0 18 IRb 0.000000 0 0 172 300 no 0.000000 1 0.000000 NA 1.000000 31.600000 rpl23 gene rpl23 rpl23 88658 88939 -1 282 IRb 0.000000 0 0 190 53 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_088 igs rpl23|trnI-CAU rpl23-trnI-CAU 88940 89114 0 175 IRb 0.012121 2 10 300 300 no 1.000000 2 1.000000 NA 0.942857 64.000000 trnI-CAU tRNA trnI-CAU trnI-CAU 89115 89188 -1 74 IRb 0.000000 0 0 61 300 no 0.000000 1 0.000000 NA 1.000000 23.300000 IGS_089 igs trnI-CAU|ycf2 trnI-CAU-ycf2 89189 89276 0 88 IRb 0.000000 0 0 135 300 no 0.000000 1 0.000000 NA 1.000000 28.900000 ycf2 gene ycf2 ycf2 89277 96122 1 6846 IRb 0.002048 14 9 223 101 no 1.000000 2 1.000000 NA 0.998685 46.400000 IGS_090 igs ycf2|trnL-CAA ycf2-trnL-CAA 96123 97071 0 949 IRb 0.001055 1 1 300 200 no 1.000000 2 1.000000 NA 0.998946 59.500000 trnL-CAA tRNA trnL-CAA trnL-CAA 97072 97152 -1 81 IRb 0.000000 0 0 300 119 no 0.000000 1 0.000000 NA 1.000000 27.700000 IGS_091 igs trnL-CAA|ndhB trnL-CAA-ndhB 97153 97723 0 571 IRb 0.003503 2 0 300 278 no 1.000000 2 1.000000 NA 1.000000 60.200000 ndhB gene ndhB ndhB 97724 99941 -1 2218 IRb 0.001803 4 0 300 52 no 1.000000 2 1.000000 NA 1.000000 47.200000 IGS_092 igs ndhB|rps7 ndhB-rps7 99942 100260 0 319 IRb 0.006270 2 0 179 300 no 1.000000 2 1.000000 NA 1.000000 54.900000 rps7 gene rps7 rps7 100261 100728 -1 468 IRb 0.000000 0 0 257 300 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_093 igs rps7|rps12 rps7-rps12 100729 101332 0 604 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 rps12_part2 gene rps12 rps12 101333 101575 -1 243 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_094 igs rps12|trnV-GAC rps12-trnV-GAC 101576 103469 0 1894 IRb 0.000000 0 12 300 300 no 1.000000 2 1.000000 NA 0.993664 58.500000 trnV-GAC tRNA trnV-GAC trnV-GAC 103470 103541 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_095 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 103542 103775 0 234 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 103776 105266 1 1491 IRb 0.002012 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.900000 IGS_096 igs rrn16S|trnI-GAU rrn16S-trnI-GAU 105267 105562 0 296 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 105563 105604 1 42 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 106553 106587 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_099 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 106588 106651 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 106652 106689 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 107484 107518 1 35 IRb 0.000000 0 0 300 293 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_102 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 107519 107675 0 157 IRb 0.000000 0 0 300 136 no 0.000000 1 0.000000 NA 1.000000 28.900000 rrn23S rRNA rrn23S rrn23S 107676 110485 1 2810 IRb 0.000712 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 IGS_103 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 110486 110583 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 110584 110687 1 104 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_104 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 110688 110911 0 224 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn5S rRNA rrn5S rrn5S 110912 111032 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_105 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 111033 111285 0 253 IRb 0.000000 0 24 300 205 no 1.000000 2 1.000000 NA 0.905138 56.100000 trnR-ACG tRNA trnR-ACG trnR-ACG 111286 111359 1 74 IRb 0.000000 0 0 300 131 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_106 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 111360 111746 0 387 IRb 0.015544 6 1 300 300 no 1.000000 2 1.000000 NA 0.997416 63.500000 trnN-GUU tRNA trnN-GUU trnN-GUU 111747 111818 -1 72 IRb 0.000000 0 0 191 300 no 0.000000 1 0.000000 NA 1.000000 33.100000 IGS_107 igs trnN-GUU|ndhF trnN-GUU-ndhF 111819 112896 0 1078 IRb 0.019553 21 4 263 3 no 1.000000 2 1.000000 NA 0.996289 55.600000 ndhF gene ndhF ndhF 112897 115137 -1 2241 SSC 0.008925 20 0 1 13 yes 1.000000 2 1.000000 NA 1.000000 47.400000 IGS_108 igs ndhF|rpl32 ndhF-rpl32 115138 115898 0 761 SSC 0.090788 68 12 239 20 yes 1.000000 2 1.000000 NA 0.984231 80.400000 rpl32 gene rpl32 rpl32 115899 116066 1 168 SSC 0.029762 5 0 2 11 no 1.000000 2 1.000000 NA 1.000000 54.800000 IGS_109 igs rpl32|trnL-UAG rpl32-trnL-UAG 116067 116451 0 385 SSC 0.036458 14 1 5 139 no 1.000000 2 1.000000 NA 0.997403 60.800000 trnL-UAG tRNA trnL-UAG trnL-UAG 116452 116531 1 80 SSC 0.000000 0 0 171 59 no 0.000000 1 0.000000 NA 1.000000 23.200000 IGS_110 igs trnL-UAG|ccsA trnL-UAG-ccsA 116532 116632 0 101 SSC 0.010101 1 2 251 41 no 1.000000 2 1.000000 NA 0.980198 48.300000 ccsA gene ccsA ccsA 116633 117604 1 972 SSC 0.012346 12 0 41 17 no 1.000000 2 1.000000 NA 1.000000 52.100000 IGS_111 igs ccsA|ndhD ccsA-ndhD 117605 117915 0 311 SSC 0.033670 10 14 40 120 yes 1.000000 2 1.000000 NA 0.954984 64.300000 ndhD gene ndhD ndhD 117916 119430 -1 1515 SSC 0.007261 11 0 3 4 no 1.000000 2 1.000000 NA 1.000000 48.100000 IGS_112 igs ndhD|psaC ndhD-psaC 119431 119538 0 108 SSC 0.064815 7 0 56 66 yes 1.000000 2 1.000000 NA 1.000000 72.300000 psaC gene psaC psaC 119539 119784 -1 246 SSC 0.016260 4 0 27 25 no 1.000000 2 1.000000 NA 1.000000 48.700000 IGS_113 igs psaC|ndhE psaC-ndhE 119785 120048 0 264 SSC 0.015152 4 0 8 177 no 1.000000 2 1.000000 NA 1.000000 46.800000 ndhE gene ndhE ndhE 120049 120354 -1 306 SSC 0.016340 5 0 9 103 no 1.000000 2 1.000000 NA 1.000000 47.700000 IGS_114 igs ndhE|ndhG ndhE-ndhG 120355 120590 0 236 SSC 0.012712 3 0 14 300 no 1.000000 2 1.000000 NA 1.000000 45.900000 ndhG gene ndhG ndhG 120591 121121 -1 531 SSC 0.005650 3 0 11 88 no 1.000000 2 1.000000 NA 1.000000 46.400000 IGS_115 igs ndhG|ndhI ndhG-ndhI 121122 121459 0 338 SSC 0.127273 42 8 107 218 yes 1.000000 2 1.000000 NA 0.976331 83.600000 ndhI gene ndhI ndhI 121460 121945 -1 486 SSC 0.002058 1 0 15 124 no 1.000000 2 1.000000 NA 1.000000 43.700000 IGS_116 igs ndhI|ndhA ndhI-ndhA 121946 122024 0 79 SSC 0.000000 0 0 267 45 no 0.000000 1 0.000000 NA 1.000000 22.100000 ndhA gene ndhA ndhA 122025 124357 -1 2333 SSC 0.011658 27 17 300 83 no 1.000000 2 1.000000 NA 0.992713 55.600000 IGS_117 igs ndhA|ndhH ndhA-ndhH 124358 124358 0 1 SSC 0.000000 0 0 300 82 no 0.000000 1 0.000000 NA 1.000000 24.900000 ndhH gene ndhH ndhH 124359 125540 -1 1182 SSC 0.005922 7 0 300 11 no 1.000000 2 1.000000 NA 1.000000 48.000000 IGS_118 igs ndhH|rps15 ndhH-rps15 125541 125643 0 103 SSC 0.019417 2 0 38 30 no 1.000000 2 1.000000 NA 1.000000 50.900000 rps15 gene rps15 rps15 125644 125916 -1 273 SSC 0.010989 3 0 79 24 no 1.000000 2 1.000000 NA 1.000000 45.600000 IGS_119 igs rps15|ycf1 rps15-ycf1 125917 126201 0 285 SSC 0.010601 3 2 62 24 no 1.000000 2 1.000000 NA 0.992982 46.100000 ycf1 gene ycf1 ycf1 126202 131613 -1 5412 SSC 0.015353 83 6 29 300 no 1.000000 2 1.000000 NA 0.998891 48.600000 IGS_120 igs ycf1|trnN-GUU ycf1-trnN-GUU 131614 131945 0 332 IRa 0.000000 0 0 300 263 no 0.000000 1 0.000000 NA 1.000000 34.400000 trnN-GUU tRNA trnN-GUU trnN-GUU 131946 132017 1 72 IRa 0.000000 0 0 300 191 no 0.000000 1 0.000000 NA 1.000000 33.100000 IGS_121 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 132018 132404 0 387 IRa 0.015544 6 1 300 300 no 1.000000 2 1.000000 NA 0.997416 63.500000 trnR-ACG tRNA trnR-ACG trnR-ACG 132405 132478 -1 74 IRa 0.000000 0 0 131 300 no 0.000000 1 0.000000 NA 1.000000 28.600000 IGS_122 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 132479 132731 0 253 IRa 0.000000 0 24 205 300 no 1.000000 2 1.000000 NA 0.905138 56.100000 rrn5S rRNA rrn5S rrn5S 132732 132852 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_123 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 132853 133076 0 224 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn4.5S rRNA rrn4.5S rrn4.5S 133077 133180 -1 104 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_124 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 133181 133278 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 133279 136088 -1 2810 IRa 0.000712 2 0 300 300 no 1.000000 2 1.000000 NA 1.000000 56.400000 IGS_125 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 136089 136245 0 157 IRa 0.000000 0 0 136 300 no 0.000000 1 0.000000 NA 1.000000 28.900000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 136246 136280 -1 35 IRa 0.000000 0 0 293 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 137075 137112 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_128 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 137113 137176 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 137177 137211 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 138160 138201 -1 42 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_131 igs trnI-GAU|rrn16S trnI-GAU-rrn16S 138202 138497 0 296 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 138498 139988 -1 1491 IRa 0.002012 3 0 300 300 no 1.000000 2 1.000000 NA 1.000000 59.900000 IGS_132 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 139989 140222 0 234 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 140223 140294 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_133 igs trnV-GAC|rps12 trnV-GAC-rps12 140295 142188 0 1894 IRa 0.000000 0 12 300 300 no 1.000000 2 1.000000 NA 0.993664 58.500000 rps12_part2 gene rps12 rps12 142189 142431 1 243 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 IGS_134 igs rps12|rps7 rps12-rps7 142432 143035 0 604 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 40.000000 rps7 gene rps7 rps7 143036 143503 1 468 IRa 0.000000 0 0 300 257 no 0.000000 1 0.000000 NA 1.000000 37.300000 IGS_135 igs rps7|ndhB rps7-ndhB 143504 143822 0 319 IRa 0.006270 2 0 300 179 no 1.000000 2 1.000000 NA 1.000000 54.900000 ndhB gene ndhB ndhB 143823 146040 1 2218 IRa 0.001803 4 0 52 300 no 1.000000 2 1.000000 NA 1.000000 47.200000 IGS_136 igs ndhB|trnL-CAA ndhB-trnL-CAA 146041 146611 0 571 IRa 0.003503 2 0 278 300 no 1.000000 2 1.000000 NA 1.000000 60.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 146612 146692 1 81 IRa 0.000000 0 0 119 300 no 0.000000 1 0.000000 NA 1.000000 27.700000 IGS_137 igs trnL-CAA|ycf2 trnL-CAA-ycf2 146693 147641 0 949 IRa 0.001055 1 1 200 300 no 1.000000 2 1.000000 NA 0.998946 59.500000 ycf2 gene ycf2 ycf2 147642 154487 -1 6846 IRa 0.002048 14 9 101 223 no 1.000000 2 1.000000 NA 0.998685 46.400000 IGS_138 igs ycf2|trnI-CAU ycf2-trnI-CAU 154488 154575 0 88 IRa 0.000000 0 0 300 135 no 0.000000 1 0.000000 NA 1.000000 28.900000 trnI-CAU tRNA trnI-CAU trnI-CAU 154576 154649 1 74 IRa 0.000000 0 0 300 61 no 0.000000 1 0.000000 NA 1.000000 23.300000 IGS_139 igs trnI-CAU|rpl23 trnI-CAU-rpl23 154650 154824 0 175 IRa 0.012121 2 10 300 300 no 1.000000 2 1.000000 NA 0.942857 64.000000 rpl23 gene rpl23 rpl23 154825 155106 1 282 IRa 0.000000 0 0 53 190 no 0.000000 1 0.000000 NA 1.000000 22.700000 IGS_140 igs rpl23|rpl2 rpl23-rpl2 155107 155124 0 18 IRa 0.000000 0 0 300 172 no 0.000000 1 0.000000 NA 1.000000 31.600000 rpl2 gene rpl2 rpl2 155125 156625 1 1501 IRa 0.001332 2 0 300 230 no 1.000000 2 1.000000 NA 1.000000 59.500000 IGS_141 igs rpl2|trnH-GUG rpl2-trnH-GUG 156626 13 0 201 IRa 0.000000 0 33 300 29 no 1.000000 2 1.000000 NA 0.835821 41.300000