Hotspot

psbM-trnD-GUC

LSC · 31224-32404 · 1181 bp

Back to Atalantia

Pi 0.119

MarkerSeek score 81.60

Primer available yes

Label psbM-trnD-GUC

Feature Metadata

label_name: psbM-trnD-GUC
feature_type: igs
region: LSC
length_bp: 1181
variable_sites: 305
pi: 0.119
unique_haplotype_count: 8
primer_available: yes
alignment_reliability: 0.98
markerseek_score: 81.60

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
psbM-trnD-GUC_p1	TGCGAGAATATTTACTTCCA	TTCAATTGGTCAGAGCACCG	35.0	50.0	52.0	58.5	746-1266 bp	1.0	52.0
psbM-trnD-GUC_p2	ATGCGAGAATATTTACTTCCA	TTCAATTGGTCAGAGCACCG	33.3	50.0	52.7	58.5	747-1267 bp	1.0	52.0
psbM-trnD-GUC_p3	TGCGAGAATATTTACTTCCAT	TTCAATTGGTCAGAGCACCG	33.3	50.0	52.7	58.5	746-1266 bp	1.0	52.0
psbM-trnD-GUC_p4	AATGCGAGAATATTTACTTCCA	TTCAATTGGTCAGAGCACCG	31.8	50.0	53.6	58.5	748-1268 bp	1.0	52.0
psbM-trnD-GUC_p5	TGCGAGAATATTTACTTCCA	GTTCAATTGGTCAGAGCACC	35.0	50.0	52.0	57.0	747-1267 bp	1.0	52.0