feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 1 58 -1 58 LSC 0.000000 0 0 14 46 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 59 844 0 786 LSC 0.114739 245 382 72 168 yes 1.000000 13 1.000000 0.073293 0.788804 81.500000 psbA gene psbA psbA 845 1906 -1 1062 LSC 0.003670 17 0 53 143 no 0.384615 8 0.625000 0.003670 1.000000 39.800000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1907 2169 0 263 LSC 0.014298 16 31 161 51 no 0.384615 8 0.625000 0.010647 0.935361 47.600000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 2170 2204 -1 35 LSC 0.000000 0 0 41 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 matK gene matK matK 2473 4011 -1 1539 LSC 0.010180 73 0 18 120 no 0.615385 10 0.800000 0.010180 1.000000 48.300000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 4012 4742 0 731 LSC 0.010909 34 0 143 39 no 0.461538 9 0.666667 0.010909 1.000000 47.300000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4743 4779 -1 37 LSC 0.000000 0 1 26 2 no 0.076923 2 0.500000 0.000000 1.000000 23.700000 IGS_006 igs trnK-UUU|trnQ-UUG trnK-UUU-trnQ-UUG 4780 8297 0 3518 LSC 0.028283 343 572 63 178 no 1.000000 13 1.000000 0.022145 0.962763 73.700000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 8298 8369 -1 72 LSC 0.000000 0 0 16 106 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_007 igs trnQ-UUG|psbK trnQ-UUG-psbK 8370 8758 0 389 LSC 0.018465 32 38 88 236 no 0.769231 11 0.909091 0.017264 0.984576 65.700000 psbK gene psbK psbK 8759 8947 1 189 LSC 0.002442 3 0 88 47 no 0.153846 3 0.666667 0.002442 1.000000 28.200000 IGS_008 igs psbK|psbI psbK-psbI 8948 9427 0 480 LSC 0.021283 45 24 277 135 yes 0.846154 12 0.916667 0.021300 0.997917 75.800000 psbI gene psbI psbI 9428 9538 1 111 LSC 0.000000 0 0 143 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_009 igs psbI|trnS-GCU psbI-trnS-GCU 9539 9680 0 142 LSC 0.017970 11 24 254 156 no 0.461538 8 0.750000 0.017951 0.978873 62.000000 trnS-GCU tRNA trnS-GCU trnS-GCU 9681 9768 -1 88 LSC 0.000000 0 0 10 68 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_010 igs trnS-GCU|trnS-CGA trnS-GCU-trnS-CGA 9769 12266 0 2498 LSC 0.108008 650 1395 98 26 yes 1.000000 13 1.000000 0.066831 0.754203 75.500000 trnS-CGA_part1 tRNA trnS-CGA trnS-CGA 12267 12297 1 31 LSC 0.012407 1 0 90 10 no 0.000000 2 0.000000 0.012407 1.000000 29.100000 trnS-CGA_part2 tRNA trnS-CGA trnS-CGA 13018 13077 1 60 LSC 0.000000 0 0 110 56 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 IGS_013 igs trnS-CGA|trnR-UCU trnS-CGA-trnR-UCU 13078 13208 0 131 LSC 0.016210 9 6 170 76 no 0.846154 12 0.916667 0.015938 1.000000 61.800000 trnR-UCU tRNA trnR-UCU trnR-UCU 13209 13280 1 72 LSC 0.002137 1 0 23 4 no 0.076923 2 0.500000 0.002137 1.000000 23.200000 IGS_014 igs trnR-UCU|atpA trnR-UCU-atpA 13281 13431 0 151 LSC 0.018895 14 14 95 66 no 0.307692 8 0.500000 0.018814 0.993377 55.100000 atpA gene atpA atpA 13432 14955 -1 1524 LSC 0.005737 41 0 3 21 no 0.692308 11 0.818182 0.005737 1.000000 44.100000 IGS_015 igs atpA|atpF atpA-atpF 14956 15031 0 76 LSC 0.011808 5 2 71 96 no 0.307692 6 0.666667 0.011944 1.000000 46.500000 atpF gene atpF atpF 15032 16900 -1 1869 LSC 0.062341 318 589 54 71 yes 1.000000 13 1.000000 0.042905 0.931514 84.400000 IGS_016 igs atpF|atpH atpF-atpH 16901 17403 0 503 LSC 0.012693 25 43 14 300 no 0.692308 11 0.818182 0.009005 0.990060 54.500000 atpH gene atpH atpH 17404 17649 -1 246 LSC 0.001251 2 0 51 84 no 0.076923 2 0.500000 0.001251 1.000000 25.600000 IGS_017 igs atpH|atpI atpH-atpI 17650 18543 0 894 LSC 0.011831 45 87 297 113 no 0.846154 12 0.916667 0.012126 0.989933 66.600000 atpI gene atpI atpI 18544 19287 -1 744 LSC 0.005480 21 0 23 147 no 0.615385 10 0.800000 0.005480 1.000000 44.300000 IGS_018 igs atpI|rps2 atpI-rps2 19288 19562 0 275 LSC 0.010293 11 42 122 34 no 0.538462 10 0.700000 0.010268 0.970909 45.600000 rps2 gene rps2 rps2 19563 20273 -1 711 LSC 0.002921 11 0 11 35 no 0.307692 6 0.666667 0.002921 1.000000 34.800000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 20274 20490 0 217 LSC 0.012880 11 8 300 28 no 0.461538 8 0.750000 0.013037 1.000000 46.200000 rpoC2 gene rpoC2 rpoC2 20491 24630 -1 4140 LSC 0.007729 141 0 7 36 no 0.692308 11 0.818182 0.007729 1.000000 41.300000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 24631 24797 0 167 LSC 0.011898 9 10 45 64 no 0.307692 7 0.571429 0.010596 1.000000 45.900000 rpoC1 gene rpoC1 rpoC1 24798 27609 -1 2812 LSC 0.006252 80 21 31 300 no 0.692308 11 0.818182 0.006160 0.998222 44.800000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 27610 27635 0 26 LSC 0.000000 0 0 20 300 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 rpoB gene rpoB rpoB 27636 30854 -1 3219 LSC 0.004636 66 0 46 56 no 0.692308 11 0.818182 0.004636 1.000000 42.600000 IGS_022 igs rpoB|trnC-GCA rpoB-trnC-GCA 30855 32626 0 1772 LSC 0.069074 363 695 55 101 yes 1.000000 13 1.000000 0.049024 0.958239 85.300000 trnC-GCA tRNA trnC-GCA trnC-GCA 32627 32697 1 71 LSC 0.002167 1 0 14 30 no 0.076923 2 0.500000 0.002167 1.000000 24.000000 IGS_023 igs trnC-GCA|petN trnC-GCA-petN 32698 33560 0 863 LSC 0.011883 43 179 85 107 no 0.692308 11 0.818182 0.011981 0.998841 61.600000 petN gene petN petN 33561 33650 1 90 LSC 0.000000 0 0 121 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_024 igs petN|psbM petN-psbM 33651 34294 0 644 LSC 0.015479 38 103 211 162 no 0.846154 12 0.916667 0.012961 0.996894 72.700000 psbM gene psbM psbM 34295 34399 -1 105 LSC 0.004396 3 0 76 57 no 0.230769 4 0.750000 0.004396 1.000000 32.900000 IGS_025 igs psbM|trnD-GUC psbM-trnD-GUC 34400 34857 0 458 LSC 0.008118 18 2 181 76 no 0.538462 9 0.777778 0.008139 1.000000 46.900000 trnD-GUC tRNA trnD-GUC trnD-GUC 34858 34931 -1 74 LSC 0.002079 1 0 53 2 no 0.076923 2 0.500000 0.002079 1.000000 23.000000 IGS_026 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 34932 35260 0 329 LSC 0.011007 13 18 127 153 no 0.307692 8 0.500000 0.011007 0.945289 48.500000 trnY-GUA tRNA trnY-GUA trnY-GUA 35261 35344 -1 84 LSC 0.003663 2 0 33 69 no 0.153846 3 0.666667 0.003663 1.000000 28.700000 IGS_027 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 35345 35599 0 255 LSC 0.047985 45 129 117 73 no 0.461538 9 0.666667 0.046202 0.764706 64.000000 IGS_028 igs trnE-UUC|trnT-GGU trnE-UUC-trnT-GGU 35673 36483 0 811 LSC 0.023796 72 168 165 79 no 0.846154 12 0.916667 0.019827 0.884094 70.000000 trnT-GGU tRNA trnT-GGU trnT-GGU 36484 36555 1 72 LSC 0.006410 3 0 2 7 no 0.076923 2 0.500000 0.006410 1.000000 28.400000 IGS_029 igs trnT-GGU|psbD trnT-GGU-psbD 36556 37672 0 1117 LSC 0.012693 62 40 74 9 no 1.000000 13 1.000000 0.012752 0.993733 61.200000 psbD gene psbD psbD 37673 38734 1 1062 LSC 0.004080 19 0 77 75 no 0.615385 10 0.800000 0.004080 1.000000 46.200000 psbC gene psbC psbC 38682 40103 1 1422 LSC 0.003552 21 0 79 24 no 0.461538 8 0.750000 0.003552 1.000000 38.900000 IGS_031 igs psbC|trnS-UGA psbC-trnS-UGA 40104 40228 0 125 LSC 0.014564 9 3 33 27 no 0.384615 8 0.625000 0.014797 1.000000 46.300000 trnS-UGA tRNA trnS-UGA trnS-UGA 40229 40321 -1 93 LSC 0.004136 1 0 42 31 no 0.000000 2 0.000000 0.004136 1.000000 24.300000 IGS_032 igs trnS-UGA|psbZ trnS-UGA-psbZ 40322 40656 0 335 LSC 0.006812 11 5 65 265 no 0.153846 5 0.400000 0.006875 1.000000 36.200000 psbZ gene psbZ psbZ 40657 40845 1 189 LSC 0.004884 6 0 64 76 no 0.153846 3 0.666667 0.004884 1.000000 32.600000 IGS_033 igs psbZ|trnG-GCC psbZ-trnG-GCC 40846 41142 0 297 LSC 0.009265 15 4 253 12 no 0.692308 11 0.818182 0.009179 0.989899 44.400000 trnG-GCC tRNA trnG-GCC trnG-GCC 41143 41213 1 71 LSC 0.013001 2 0 6 54 no 0.000000 3 0.000000 0.013001 1.000000 28.600000 IGS_034 igs trnG-GCC|trnM-CAU trnG-GCC-trnM-CAU 41214 41381 0 168 LSC 0.037329 15 9 27 105 no 0.538462 9 0.777778 0.021531 0.982143 64.300000 trnM-CAU tRNA trnM-CAU trnM-CAU 41382 41455 -1 74 LSC 0.002079 1 0 11 31 no 0.076923 2 0.500000 0.002079 1.000000 23.600000 IGS_035 igs trnM-CAU|rps14 trnM-CAU-rps14 41456 41608 0 153 LSC 0.011899 6 0 85 138 no 0.230769 7 0.428571 0.011899 1.000000 39.700000 rps14 gene rps14 rps14 41609 41911 -1 303 LSC 0.004231 6 0 4 102 no 0.153846 5 0.400000 0.004231 1.000000 26.400000 IGS_036 igs rps14|psaB rps14-psaB 41912 42057 0 146 LSC 0.011240 9 1 101 114 no 0.461538 7 0.857143 0.011253 1.000000 48.600000 psaB gene psaB psaB 42058 44262 -1 2205 LSC 0.004436 39 0 11 300 no 0.692308 11 0.818182 0.004436 1.000000 41.500000 IGS_037 igs psaB|psaA psaB-psaA 44263 44287 0 25 LSC 0.000000 0 0 290 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 44288 46540 -1 2253 LSC 0.002208 28 0 300 225 no 0.538462 10 0.700000 0.002208 1.000000 51.100000 IGS_038 igs psaA|ycf3 psaA-ycf3 46541 47213 0 673 LSC 0.009011 25 197 201 130 no 0.615385 10 0.800000 0.009092 0.992571 60.300000 ycf3 gene ycf3 ycf3 47214 49288 -1 2075 LSC 0.006444 54 57 16 15 no 0.846154 12 0.916667 0.006374 0.986024 49.700000 IGS_039 igs ycf3|trnS-GGA ycf3-trnS-GGA 49289 50148 0 860 LSC 0.009610 37 22 285 113 no 0.615385 10 0.800000 0.009556 0.994186 57.700000 trnS-GGA tRNA trnS-GGA trnS-GGA 50149 50235 1 87 LSC 0.000000 0 0 27 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_040 igs trnS-GGA|rps4 trnS-GGA-rps4 50236 50560 0 325 LSC 0.006627 10 28 114 135 no 0.384615 8 0.625000 0.006790 1.000000 47.800000 rps4 gene rps4 rps4 50561 51166 -1 606 LSC 0.004274 14 0 176 22 no 0.538462 9 0.777778 0.004274 1.000000 41.600000 IGS_041 igs rps4|trnT-UGU rps4-trnT-UGU 51167 52364 0 1198 LSC 0.089280 289 956 102 4 yes 1.000000 13 1.000000 0.066126 0.655259 74.700000 trnT-UGU tRNA trnT-UGU trnT-UGU 52365 52437 -1 73 LSC 0.005269 1 0 38 129 no 0.000000 2 0.000000 0.005269 1.000000 25.700000 IGS_042 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 52438 53956 0 1519 LSC 0.084907 388 635 68 171 yes 1.000000 13 1.000000 0.060453 0.907176 84.700000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 53957 53991 1 35 LSC 0.004396 1 0 20 136 no 0.076923 2 0.500000 0.004396 1.000000 27.200000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 54630 54679 1 50 LSC 0.000000 0 0 149 50 no 0.000000 1 0.000000 0.000000 1.000000 22.500000 IGS_045 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 54680 55051 0 372 LSC 0.011370 17 37 199 187 no 0.461538 9 0.666667 0.011256 0.997312 59.700000 trnF-GAA tRNA trnF-GAA trnF-GAA 55052 55124 1 73 LSC 0.004215 2 0 72 114 no 0.153846 3 0.666667 0.004215 1.000000 32.400000 IGS_046 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 55125 56245 0 1121 LSC 0.055617 195 414 145 156 yes 1.000000 13 1.000000 0.041492 0.900089 90.500000 ndhJ gene ndhJ ndhJ 56246 56722 -1 477 LSC 0.004139 9 0 39 40 no 0.538462 9 0.777778 0.004139 1.000000 39.700000 IGS_047 igs ndhJ|ndhK ndhJ-ndhK 56723 56826 0 104 LSC 0.008506 4 23 10 98 no 0.153846 4 0.500000 0.008766 1.000000 36.700000 ndhK gene ndhK ndhK 56827 57504 -1 678 LSC 0.004538 16 0 2 80 no 0.692308 11 0.818182 0.004538 1.000000 43.100000 IGS_048 igs ndhK|ndhC ndhK-ndhC 57505 57563 0 59 LSC 0.000000 0 0 300 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 ndhC gene ndhC ndhC 57564 57926 -1 363 LSC 0.007841 11 0 300 0 no 0.307692 8 0.500000 0.007841 1.000000 33.100000 IGS_049 igs ndhC|trnV ndhC-trnV 57927 59277 0 1351 LSC 0.012469 76 46 23 52 no 1.000000 13 1.000000 0.012514 0.997779 62.200000 trnV_part2 tRNA trnV trnV 59278 59308 -1 31 LSC 0.000000 0 0 13 21 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 trnV_part1 tRNA trnV trnV 59913 59942 -1 30 LSC 0.000000 0 0 15 52 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_052 igs trnV|trnM-CAU trnV-trnM-CAU 59943 60125 0 183 LSC 0.012330 9 0 45 122 no 0.461538 8 0.750000 0.012330 1.000000 42.500000 trnM-CAU tRNA trnM-CAU trnM-CAU 60126 60198 1 73 LSC 0.002107 1 0 7 49 no 0.076923 2 0.500000 0.002107 1.000000 23.400000 IGS_053 igs trnM-CAU|atpE trnM-CAU-atpE 60199 60358 0 160 LSC 0.013593 10 2 80 189 no 0.384615 7 0.714286 0.013344 1.000000 47.400000 atpE gene atpE atpE 60359 60766 -1 408 LSC 0.003645 8 0 24 218 no 0.307692 6 0.666667 0.003645 1.000000 32.700000 atpB gene atpB atpB 60763 62259 -1 1497 LSC 0.003468 24 0 175 14 no 0.538462 9 0.777778 0.003468 1.000000 39.700000 IGS_055 igs atpB|rbcL atpB-rbcL 62260 63353 0 1094 LSC 0.067331 177 378 104 53 yes 1.000000 13 1.000000 0.028609 0.851005 82.300000 rbcL gene rbcL rbcL 63354 64817 1 1464 LSC 0.006874 37 0 217 101 no 0.615385 10 0.800000 0.006874 1.000000 50.400000 IGS_056 igs rbcL|accD rbcL-accD 64818 65769 0 952 LSC 0.022364 76 218 27 84 no 0.692308 11 0.818182 0.018083 0.848739 59.600000 accD gene accD accD 65770 67254 1 1485 LSC 0.007261 49 6 10 15 no 0.846154 12 0.916667 0.007268 1.000000 49.500000 IGS_057 igs accD|psaI accD-psaI 67255 69046 0 1792 LSC 0.081230 434 988 1 59 no 1.000000 13 1.000000 0.058881 0.780134 75.500000 psaI gene psaI psaI 69047 69157 1 111 LSC 0.005429 3 0 39 81 no 0.230769 4 0.750000 0.005429 1.000000 31.800000 IGS_058 igs psaI|ycf4 psaI-ycf4 69158 69530 0 373 LSC 0.007540 15 16 51 300 no 0.461538 9 0.666667 0.007005 1.000000 46.300000 ycf4 gene ycf4 ycf4 69531 70091 1 561 LSC 0.002792 10 6 52 40 no 0.384615 6 0.833333 0.002716 1.000000 39.200000 IGS_059 igs ycf4|petA ycf4-petA 70092 72289 0 2198 LSC 0.027523 160 419 300 10 no 1.000000 13 1.000000 0.012854 0.887625 66.100000 petA gene petA petA 72290 73252 1 963 LSC 0.006710 28 0 77 11 no 0.538462 10 0.700000 0.006710 1.000000 42.600000 IGS_060 igs petA|psbJ petA-psbJ 73253 74188 0 936 LSC 0.029454 120 505 33 27 no 0.692308 11 0.818182 0.030249 0.948718 68.300000 psbJ gene psbJ psbJ 74189 74311 -1 123 LSC 0.003544 2 0 61 300 no 0.076923 3 0.333333 0.003544 1.000000 28.400000 IGS_061 igs psbJ|psbL psbJ-psbL 74312 74436 0 125 LSC 0.002462 2 0 95 300 no 0.153846 3 0.666667 0.002462 1.000000 31.900000 psbL gene psbL psbL 74437 74553 -1 117 LSC 0.001315 1 0 220 203 no 0.076923 2 0.500000 0.001315 1.000000 36.900000 IGS_062 igs psbL|psbF psbL-psbF 74554 74575 0 22 LSC 0.000000 0 0 300 181 no 0.000000 1 0.000000 0.000000 1.000000 32.300000 psbF gene psbF psbF 74576 74695 -1 120 LSC 0.000000 0 0 300 61 no 0.000000 1 0.000000 0.000000 1.000000 23.300000 IGS_063 igs psbF|psbE psbF-psbE 74696 74705 0 10 LSC 0.000000 0 0 300 51 no 0.000000 1 0.000000 NA 1.000000 22.600000 psbE gene psbE psbE 74706 74957 -1 252 LSC 0.002951 4 0 300 181 no 0.230769 4 0.750000 0.002951 1.000000 40.000000 IGS_064 igs psbE|petL psbE-petL 74958 76665 0 1708 LSC 0.044462 209 583 200 178 yes 0.846154 12 0.916667 0.021904 0.835480 85.500000 petL gene petL petL 76666 76761 1 96 LSC 0.000000 0 0 38 82 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_065 igs petL|petG petL-petG 76762 76930 0 169 LSC 0.007738 5 0 134 142 no 0.230769 6 0.500000 0.007738 1.000000 40.300000 petG gene petG petG 76931 77044 1 114 LSC 0.000000 0 0 35 28 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_066 igs petG|trnW-CCA petG-trnW-CCA 77045 77170 0 126 LSC 0.005902 4 4 149 112 no 0.461538 7 0.857143 0.006067 1.000000 46.100000 trnW-CCA tRNA trnW-CCA trnW-CCA 77171 77244 -1 74 LSC 0.000000 0 0 97 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_067 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 77245 77408 0 164 LSC 0.017276 10 0 171 134 no 0.538462 9 0.777778 0.017276 1.000000 54.300000 trnP-UGG tRNA trnP-UGG trnP-UGG 77409 77482 -1 74 LSC 0.000000 0 1 32 60 no 0.000000 2 0.000000 0.000000 0.986486 22.400000 IGS_068 igs trnP-UGG|psaJ trnP-UGG-psaJ 77483 77859 0 377 LSC 0.015474 23 17 106 149 no 0.846154 12 0.916667 0.015764 0.976127 63.400000 psaJ gene psaJ psaJ 77860 77988 1 129 LSC 0.001193 1 0 6 20 no 0.076923 2 0.500000 0.001193 1.000000 22.100000 IGS_069 igs psaJ|rpl33 psaJ-rpl33 77989 78438 0 450 LSC 0.020253 36 58 135 211 yes 1.000000 13 1.000000 0.016605 1.000000 75.600000 rpl33 gene rpl33 rpl33 78439 78639 1 201 LSC 0.012246 16 0 5 10 no 0.461538 7 0.857143 0.012246 1.000000 43.200000 IGS_070 igs rpl33|rps18 rpl33-rps18 78640 79213 0 574 LSC 0.105198 154 406 206 259 yes 0.692308 11 0.818182 0.075606 0.721254 84.000000 rps18 gene rps18 rps18 79214 79519 1 306 LSC 0.005363 9 0 25 8 no 0.384615 8 0.625000 0.005363 1.000000 32.800000 IGS_071 igs rps18|rpl20 rps18-rpl20 79520 79785 0 266 LSC 0.013254 16 9 24 8 no 0.461538 8 0.750000 0.013522 1.000000 45.500000 rpl20 gene rpl20 rpl20 79786 80139 -1 354 LSC 0.006084 9 0 138 78 no 0.307692 7 0.571429 0.006084 1.000000 37.400000 IGS_072 igs rpl20|rps12 rpl20-rps12 80140 80955 0 816 LSC 0.007651 29 7 50 39 no 1.000000 13 1.000000 0.007152 1.000000 55.600000 rps12_part1 gene rps12 rps12 80956 81069 -1 114 LSC 0.004723 2 0 148 117 no 0.076923 3 0.333333 0.004723 1.000000 33.300000 IGS_073 igs rps12|clpP rps12-clpP 81070 81242 0 173 LSC 0.006596 5 23 74 5 no 0.461538 9 0.666667 0.006901 1.000000 39.200000 clpP gene clpP clpP 81243 83305 -1 2063 LSC 0.010843 103 56 16 21 no 0.846154 12 0.916667 0.010608 0.997576 55.200000 IGS_074 igs clpP|psbB clpP-psbB 83306 83764 0 459 LSC 0.014804 34 3 34 65 no 0.615385 10 0.800000 0.014951 1.000000 52.800000 psbB gene psbB psbB 83765 85291 1 1527 LSC 0.004047 29 0 122 41 no 0.384615 9 0.555556 0.004047 1.000000 39.400000 IGS_075 igs psbB|psbT psbB-psbT 85292 85482 0 191 LSC 0.010337 10 5 186 148 no 0.230769 5 0.600000 0.010461 1.000000 48.600000 psbT gene psbT psbT 85483 85584 1 102 LSC 0.001508 1 0 108 46 no 0.076923 2 0.500000 0.001508 1.000000 25.500000 IGS_076 igs psbT|psbN psbT-psbN 85585 85656 0 72 LSC 0.011752 3 0 210 154 no 0.153846 4 0.500000 0.011752 1.000000 43.700000 psbN gene psbN psbN 85657 85788 -1 132 LSC 0.002331 2 0 25 22 no 0.076923 2 0.500000 0.002331 1.000000 24.800000 IGS_077 igs psbN|psbH psbN-psbH 85789 85893 0 105 LSC 0.016484 6 0 157 254 no 0.384615 7 0.714286 0.016484 1.000000 52.300000 psbH gene psbH psbH 85894 86115 1 222 LSC 0.004851 7 0 11 32 no 0.307692 5 0.800000 0.004851 1.000000 31.500000 IGS_078 igs psbH|rpoA psbH-rpoA 86116 89486 0 3371 LSC 0.016140 193 222 233 36 no 1.000000 13 1.000000 0.011613 0.974785 62.400000 rpoA gene rpoA rpoA 89487 90506 -1 1020 LSC 0.006687 32 0 52 57 no 0.692308 11 0.818182 0.006687 1.000000 48.800000 IGS_079 igs rpoA|rps11 rpoA-rps11 90507 90579 0 73 LSC 0.014752 5 0 191 186 no 0.230769 5 0.600000 0.014752 1.000000 52.200000 rps11 gene rps11 rps11 90580 90996 -1 417 LSC 0.006272 12 24 15 69 no 0.307692 7 0.571429 0.006205 1.000000 40.600000 IGS_080 igs rps11|rpl36 rps11-rpl36 90997 91111 0 115 LSC 0.006709 4 3 203 48 no 0.384615 7 0.714286 0.006329 0.991304 39.800000 rpl36 gene rpl36 rpl36 91112 91225 -1 114 LSC 0.003824 2 0 45 74 no 0.076923 3 0.333333 0.003824 1.000000 27.500000 IGS_081 igs rpl36|rps8 rpl36-rps8 91226 91699 0 474 LSC 0.016940 37 27 65 75 no 0.846154 12 0.916667 0.017430 0.991561 66.200000 rps8 gene rps8 rps8 91700 92098 -1 399 LSC 0.006362 9 0 17 0 no 0.153846 7 0.285714 0.006362 1.000000 29.400000 IGS_082 igs rps8|rpl14 rps8-rpl14 92099 92263 0 165 LSC 0.009790 6 9 66 225 no 0.384615 8 0.625000 0.009892 1.000000 45.900000 rpl14 gene rpl14 rpl14 92264 92632 -1 369 LSC 0.004378 9 0 18 21 no 0.307692 5 0.800000 0.004378 1.000000 32.300000 IGS_083 igs rpl14|rpl16 rpl14-rpl16 92633 92757 0 125 LSC 0.017026 6 0 143 52 no 0.153846 6 0.333333 0.017026 1.000000 39.200000 rpl16 gene rpl16 rpl16 92758 93168 -1 411 LSC 0.004866 10 0 26 11 no 0.384615 6 0.833333 0.004866 1.000000 34.300000 IGS_084 igs rpl16|rps3 rpl16-rps3 93169 94454 0 1286 LSC 0.030889 143 165 300 30 yes 1.000000 13 1.000000 0.022408 0.951788 76.200000 rps3 gene rps3 rps3 94455 95111 -1 657 LSC 0.004722 14 0 43 53 no 0.153846 5 0.400000 0.004722 1.000000 35.900000 IGS_085 igs rps3|rpl22 rps3-rpl22 95112 95176 0 65 LSC 0.005917 1 0 99 13 no 0.000000 2 0.000000 0.005917 1.000000 24.300000 rpl22 gene rpl22 rpl22 95177 95485 -1 309 LSC 0.009128 12 0 11 84 no 0.461538 7 0.857143 0.009128 1.000000 37.400000 IGS_086 igs rpl22|rps19 rpl22-rps19 95486 95644 0 159 LSC 0.007257 6 31 44 219 no 0.538462 9 0.777778 0.007456 0.993711 45.700000 rps19 gene rps19 rps19 95645 95923 -1 279 LSC 0.007260 10 0 74 3 no 0.384615 8 0.625000 0.007260 1.000000 33.900000 IGS_087 igs rps19|trnM-CAU rps19-trnM-CAU 95924 97959 0 2036 IRb 0.002838 25 14 23 300 no 0.846154 12 0.916667 0.002802 0.997053 45.000000 trnM-CAU tRNA trnM-CAU trnM-CAU 97960 98033 -1 74 IRb 0.000000 0 0 186 300 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 IGS_088 igs trnM-CAU|ycf2 trnM-CAU-ycf2 98034 98101 0 68 IRb 0.000000 0 0 260 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 98102 105019 1 6918 IRb 0.004587 175 105 300 151 no 0.846154 12 0.916667 0.004606 1.000000 53.000000 IGS_089 igs ycf2|trnL-CAA ycf2-trnL-CAA 105020 106039 0 1020 IRb 0.002137 9 49 237 247 no 0.538462 9 0.777778 0.002194 0.978431 57.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 106040 106120 -1 81 IRb 0.000000 0 0 3 166 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_090 igs trnL-CAA|ndhB trnL-CAA-ndhB 106121 107010 0 890 IRb 0.026025 64 285 84 300 no 0.769231 11 0.909091 0.016245 0.914607 68.400000 ndhB gene ndhB ndhB 107011 109225 -1 2215 IRb 0.000868 11 7 234 300 no 0.153846 4 0.500000 0.000870 1.000000 42.800000 IGS_091 igs ndhB|rps7 ndhB-rps7 109226 109509 0 284 IRb 0.001083 2 9 113 300 no 0.461538 9 0.666667 0.001100 0.985915 40.600000 rps7 gene rps7 rps7 109510 109977 -1 468 IRb 0.001260 3 0 300 69 no 0.153846 4 0.500000 0.001260 1.000000 31.700000 IGS_092 igs rps7|rps12 rps7-rps12 109978 110031 0 54 IRb 0.000000 0 0 65 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 rps12_part2 gene rps12 rps12 110032 110818 -1 787 IRb 0.000554 2 0 119 300 no 0.153846 3 0.666667 0.000554 1.000000 37.400000 IGS_093 igs rps12|trnV-GAC rps12-trnV-GAC 110819 112696 0 1878 IRb 0.001857 16 26 300 98 no 0.538462 10 0.700000 0.001863 1.000000 45.300000 trnV-GAC tRNA trnV-GAC trnV-GAC 112697 112768 1 72 IRb 0.000000 0 0 300 26 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_094 igs trnV-GAC|rrn16S trnV-GAC-rrn16S 112769 112995 0 227 IRb 0.006438 6 0 300 300 no 0.307692 7 0.571429 0.006438 1.000000 45.700000 rrn16S rRNA rrn16S rrn16S 112996 114486 1 1491 IRb 0.025693 249 1 166 104 no 0.230769 4 0.750000 0.025710 1.000000 61.300000 IGS_095 igs rrn16S|trnE-UUC rrn16S-trnE-UUC 114487 114771 0 285 IRb 0.030229 38 9 300 300 no 0.307692 5 0.800000 0.030837 1.000000 69.500000 trnE-UUC_part1 tRNA trnE-UUC trnE-UUC 114772 114803 1 32 IRb 0.000000 0 0 77 300 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 trnE-UUC_part2 tRNA trnE-UUC trnE-UUC 115752 115791 1 40 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_098 igs trnE-UUC|trnA-UGC trnE-UUC-trnA-UGC 115792 115855 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 115856 115892 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 116692 116727 1 36 IRb 0.000000 0 0 159 300 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 IGS_101 igs trnA-UGC|rrn23S trnA-UGC-rrn23S 116728 116872 0 145 IRb 0.001061 1 0 195 300 no 0.076923 2 0.500000 0.001061 1.000000 36.200000 rrn23S rRNA rrn23S rrn23S 116873 119677 1 2805 IRb 0.037593 680 70 300 23 no 0.384615 7 0.714286 0.038543 1.000000 63.700000 IGS_102 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 119678 119781 0 104 IRb 0.048323 31 14 300 300 no 0.076923 3 0.333333 0.055457 1.000000 75.400000 rrn4.5S rRNA rrn4.5S rrn4.5S 119782 119884 1 103 IRb 0.000000 0 0 80 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_103 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 119885 120108 0 224 IRb 0.009615 14 0 183 191 no 0.230769 4 0.750000 0.009615 1.000000 48.900000 rrn5S rRNA rrn5S rrn5S 120109 120229 1 121 IRb 0.000000 0 0 300 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_104 igs rrn5S|trnR-ACG rrn5S-trnR-ACG 120230 120493 0 264 IRb 0.006646 5 23 300 211 no 0.769231 11 0.909091 0.006684 0.924242 56.600000 trnR-ACG tRNA trnR-ACG trnR-ACG 120494 120567 1 74 IRb 0.000000 0 0 70 137 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_105 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 120568 121141 0 574 IRb 0.006089 13 26 144 272 no 0.615385 10 0.800000 0.006078 1.000000 57.900000 trnN-GUU tRNA trnN-GUU trnN-GUU 121142 121213 -1 72 IRb 0.000000 0 0 271 200 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_106 igs trnN-GUU|ndhF trnN-GUU-ndhF 121214 122365 0 1152 IRb 0.090286 353 737 300 1 yes 1.000000 13 1.000000 0.082351 0.908854 78.700000 ndhF gene ndhF ndhF 122366 124573 -1 2208 SSC 0.010283 102 0 34 13 no 1.000000 13 1.000000 0.010283 1.000000 53.700000 IGS_107 igs ndhF|trnL-UAA ndhF-trnL-UAA 124574 124886 0 313 SSC 0.015865 21 10 71 6 no 0.692308 11 0.818182 0.015764 1.000000 51.700000 IGS_108 igs trnL-UAA|trnL-UAG trnL-UAA-trnL-UAG 124959 126882 0 1924 SSC 0.032877 215 477 47 104 no 0.846154 12 0.916667 0.024435 0.959979 74.800000 trnL-UAG tRNA trnL-UAG trnL-UAG 126883 126962 1 80 SSC 0.000000 0 0 72 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_109 igs trnL-UAG|ccsA trnL-UAG-ccsA 126963 127111 0 149 SSC 0.053383 34 86 152 96 no 0.615385 10 0.800000 0.053780 0.919463 73.900000 ccsA gene ccsA ccsA 127112 128083 1 972 SSC 0.008943 38 0 35 4 no 0.615385 10 0.800000 0.008943 1.000000 45.700000 IGS_110 igs ccsA|psaC ccsA-psaC 128084 129923 0 1840 SSC 0.007919 64 11 33 300 no 1.000000 13 1.000000 0.007707 0.998370 54.100000 psaC gene psaC psaC 129924 130169 -1 246 SSC 0.002502 4 0 84 93 no 0.230769 4 0.750000 0.002502 1.000000 32.500000 IGS_111 igs psaC|ndhE psaC-ndhE 130170 131012 0 843 SSC 0.047523 150 190 300 60 yes 0.846154 12 0.916667 0.046800 0.928826 82.100000 ndhE gene ndhE ndhE 131013 131318 -1 306 SSC 0.005028 7 0 92 61 no 0.307692 6 0.666667 0.005028 1.000000 34.300000 IGS_112 igs ndhE|ndhG ndhE-ndhG 131319 132285 0 967 SSC 0.093413 237 745 113 300 yes 0.769231 11 0.909091 0.058086 0.691830 79.000000 ndhG gene ndhG ndhG 132286 132816 -1 531 SSC 0.004732 14 0 8 70 no 0.307692 5 0.800000 0.004732 1.000000 35.400000 IGS_113 igs ndhG|ndhI ndhG-ndhI 132817 133514 0 698 SSC 0.123026 259 454 19 25 yes 1.000000 13 1.000000 0.088372 0.746418 77.000000 ndhI gene ndhI ndhI 133515 134054 -1 540 SSC 0.005176 13 0 32 288 no 0.384615 8 0.625000 0.005176 1.000000 38.700000 IGS_114 igs ndhI|ndhA ndhI-ndhA 134055 134151 0 97 SSC 0.004758 3 0 17 191 no 0.153846 3 0.666667 0.004758 1.000000 28.900000 ndhA gene ndhA ndhA 134152 136343 -1 2192 SSC 0.010766 108 67 114 149 no 0.692308 11 0.818182 0.010714 1.000000 59.800000 IGS_115 igs ndhA|ndhH ndhA-ndhH 136344 136344 0 1 SSC 0.000000 0 0 33 148 no 0.000000 1 0.000000 NA 1.000000 21.200000 ndhH gene ndhH ndhH 136345 137526 -1 1182 SSC 0.004729 29 0 34 10 no 0.538462 9 0.777778 0.004729 1.000000 41.000000 IGS_116 igs ndhH|rps15 ndhH-rps15 137527 137640 0 114 SSC 0.015182 8 9 300 36 no 0.307692 8 0.500000 0.015614 0.991228 48.600000 rps15 gene rps15 rps15 137641 137919 -1 279 SSC 0.009742 13 0 40 12 no 0.307692 7 0.571429 0.009742 1.000000 35.600000 IGS_117 igs rps15|ycf1 rps15-ycf1 137920 139144 0 1225 SSC 0.113351 412 934 92 0 yes 1.000000 13 1.000000 0.101870 0.717551 75.200000 ycf1 gene ycf1 ycf1 139145 144178 -1 5034 SSC 0.015686 350 120 14 17 no 0.846154 12 0.916667 0.015355 0.998808 54.300000 IGS_118 igs ycf1|trnN-GUU ycf1-trnN-GUU 144179 146194 0 2016 IRa 0.042507 267 1118 55 300 yes 0.846154 12 0.916667 0.032638 0.916171 76.000000 trnN-GUU tRNA trnN-GUU trnN-GUU 146195 146266 1 72 IRa 0.000000 0 0 200 271 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_119 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 146267 146840 0 574 IRa 0.006089 13 26 272 144 no 0.615385 10 0.800000 0.006078 1.000000 57.900000 trnR-ACG tRNA trnR-ACG trnR-ACG 146841 146914 -1 74 IRa 0.000000 0 0 137 70 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_120 igs trnR-ACG|rrn5S trnR-ACG-rrn5S 146915 147178 0 264 IRa 0.005975 5 22 211 300 no 0.615385 10 0.800000 0.005786 0.924242 53.500000 rrn5S rRNA rrn5S rrn5S 147179 147299 -1 121 IRa 0.000000 0 0 70 300 no 0.000000 1 0.000000 0.000000 1.000000 24.000000 IGS_121 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 147300 147523 0 224 IRa 0.009615 14 0 191 183 no 0.230769 4 0.750000 0.009615 1.000000 48.900000 rrn4.5S rRNA rrn4.5S rrn4.5S 147524 147626 -1 103 IRa 0.000000 0 0 300 80 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_122 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 147627 147730 0 104 IRa 0.048323 31 14 300 300 no 0.076923 3 0.333333 0.055457 1.000000 75.400000 rrn23S rRNA rrn23S rrn23S 147731 150535 -1 2805 IRa 0.037813 684 67 23 300 no 0.384615 7 0.714286 0.038726 1.000000 63.700000 IGS_123 igs rrn23S|trnA-UGC rrn23S-trnA-UGC 150536 150680 0 145 IRa 0.001061 1 0 300 195 no 0.076923 2 0.500000 0.001061 1.000000 36.200000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 150681 150716 -1 36 IRa 0.000000 0 0 300 159 no 0.000000 1 0.000000 0.000000 1.000000 30.700000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 151516 151552 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_126 igs trnA-UGC|trnE-UUC trnA-UGC-trnE-UUC 151553 151616 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnE-UUC_part2 tRNA trnE-UUC trnE-UUC 151617 151656 -1 40 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnE-UUC_part1 tRNA trnE-UUC trnE-UUC 152605 152636 -1 32 IRa 0.000000 0 0 300 77 no 0.000000 1 0.000000 0.000000 1.000000 24.500000 IGS_129 igs trnE-UUC|rrn16S trnE-UUC-rrn16S 152637 152921 0 285 IRa 0.030229 38 9 300 300 no 0.307692 5 0.800000 0.030837 1.000000 69.500000 rrn16S rRNA rrn16S rrn16S 152922 154412 -1 1491 IRa 0.025693 249 1 104 166 no 0.230769 4 0.750000 0.025710 1.000000 61.300000 IGS_130 igs rrn16S|trnV-GAC rrn16S-trnV-GAC 154413 154639 0 227 IRa 0.006438 6 0 300 300 no 0.307692 7 0.571429 0.006438 1.000000 45.700000 trnV-GAC tRNA trnV-GAC trnV-GAC 154640 154711 -1 72 IRa 0.000000 0 0 26 300 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 IGS_131 igs trnV-GAC|rps12 trnV-GAC-rps12 154712 156589 0 1878 IRa 0.001857 16 26 98 300 no 0.538462 10 0.700000 0.001863 1.000000 45.300000 rps12_part2 gene rps12 rps12 156590 157376 1 787 IRa 0.000554 2 0 300 119 no 0.153846 3 0.666667 0.000554 1.000000 37.400000 IGS_132 igs rps12|rps7 rps12-rps7 157377 157430 0 54 IRa 0.000000 0 0 15 65 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 rps7 gene rps7 rps7 157431 157898 1 468 IRa 0.001260 3 0 69 214 no 0.153846 4 0.500000 0.001260 1.000000 31.700000 IGS_133 igs rps7|ndhB rps7-ndhB 157899 158182 0 284 IRa 0.001715 2 7 300 113 no 0.461538 9 0.666667 0.000778 0.985915 40.000000 ndhB gene ndhB ndhB 158183 160397 1 2215 IRa 0.000868 11 7 69 300 no 0.153846 4 0.500000 0.000870 1.000000 33.000000 IGS_134 igs ndhB|trnL-CAA ndhB-trnL-CAA 160398 161287 0 890 IRa 0.027018 70 266 300 84 no 0.615385 10 0.800000 0.017517 0.905618 66.600000 trnL-CAA tRNA trnL-CAA trnL-CAA 161288 161368 1 81 IRa 0.000000 0 0 166 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_135 igs trnL-CAA|ycf2 trnL-CAA-ycf2 161369 162388 0 1020 IRa 0.002137 9 48 247 237 no 0.538462 9 0.777778 0.002194 0.978431 57.100000 ycf2 gene ycf2 ycf2 162389 169306 -1 6918 IRa 0.004587 175 106 151 300 no 0.846154 12 0.916667 0.004606 1.000000 53.000000 IGS_136 igs ycf2|trnM-CAU ycf2-trnM-CAU 169307 169374 0 68 IRa 0.000000 0 0 300 260 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnM-CAU tRNA trnM-CAU trnM-CAU 169375 169448 1 74 IRa 0.000000 0 0 300 186 no 0.000000 1 0.000000 0.000000 1.000000 32.700000 IGS_137 igs trnM-CAU|trnH-GUG trnM-CAU-trnH-GUG 169449 171454 0 2006 IRa 0.002678 12304 17645 300 104 no 1.000000 13 1.000000 0.013956 0.969982 69.000000