feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 3 76 -1 74 LSC 0.000000 0 0 1 5 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_001 igs trnH|psbA trnH-psbA 77 359 0 283 LSC 0.056268 36 11 75 57 yes 0.714286 6 0.833333 0.039738 0.964664 75.000000 psbA gene psbA psbA 360 1421 -1 1062 LSC 0.002152 5 0 22 112 no 0.428571 5 0.600000 0.002152 1.000000 36.200000 IGS_002 igs psbA|trnK psbA-trnK 1422 1690 0 269 LSC 0.023367 16 10 113 201 no 0.428571 5 0.600000 0.024098 0.966543 56.800000 trnK_part2 tRNA trnK trnK 1691 1726 -1 36 LSC 0.000000 0 0 4 165 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 matK gene matK matK 2025 3539 -1 1515 LSC 0.011881 45 6 2 13 no 0.714286 6 0.833333 0.011920 0.996040 47.900000 IGS_005 igs matK|trnK matK-trnK 3540 4282 0 743 LSC 0.010846 22 13 5 46 no 0.714286 6 0.833333 0.010788 0.997308 49.400000 trnK_part1 tRNA trnK trnK 4283 4319 -1 37 LSC 0.000000 0 0 140 9 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_006 igs trnK|rps16 trnK-rps16 4320 4927 0 608 LSC 0.019787 35 13 177 32 no 0.714286 6 0.833333 0.019615 0.995066 59.200000 rps16 gene rps16 rps16 4928 6097 -1 1170 LSC 0.014306 44 26 54 28 no 1.000000 7 1.000000 0.014186 0.984615 59.100000 IGS_007 igs rps16|trnQ rps16-trnQ 6098 6518 0 421 LSC 0.024943 26 17 60 83 yes 0.714286 6 0.833333 0.022869 0.978622 62.300000 trnQ tRNA trnQ trnQ 6519 6590 -1 72 LSC 0.000000 0 0 8 11 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_008 igs trnQ|psbK trnQ-psbK 6591 6911 0 321 LSC 0.011571 8 0 80 65 no 0.428571 4 0.750000 0.011571 1.000000 40.400000 psbK gene psbK psbK 6912 7097 1 186 LSC 0.004608 2 0 2 4 no 0.142857 3 0.333333 0.004608 1.000000 25.000000 IGS_009 igs psbK|psbI psbK-psbI 7098 7485 0 388 LSC 0.018949 17 8 39 11 no 1.000000 7 1.000000 0.019167 0.992268 56.400000 psbI gene psbI psbI 7486 7596 1 111 LSC 0.002574 1 0 14 16 no 0.142857 2 0.500000 0.002574 1.000000 24.800000 IGS_010 igs psbI|trnS psbI-trnS 7597 7684 0 88 LSC 0.036449 7 8 99 93 no 0.142857 4 0.250000 0.036640 0.920455 57.800000 trnS tRNA trnS trnS 7685 7773 -1 89 LSC 0.000000 0 0 36 4 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_011 igs trnS|trnT trnS-trnT 7774 8432 0 659 LSC 0.026664 40 18 125 65 yes 1.000000 7 1.000000 0.024019 0.980273 70.900000 trnT_part1 tRNA trnT trnT 8433 8466 1 34 LSC 0.000000 0 0 16 31 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 trnT_part2 tRNA trnT trnT 9180 9222 1 43 LSC 0.000000 0 0 40 14 no 0.000000 1 0.000000 0.000000 1.000000 19.800000 IGS_014 igs trnT|trnR trnT-trnR 9223 9352 0 130 LSC 0.032484 11 1 83 83 no 0.428571 4 0.750000 0.032484 0.992308 58.900000 trnR tRNA trnR trnR 9353 9424 1 72 LSC 0.000000 0 0 7 11 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_015 igs trnR|atpA trnR-atpA 9425 9715 0 291 LSC 0.038582 27 31 79 0 yes 0.714286 6 0.833333 0.039677 0.924399 64.300000 atpA gene atpA atpA 9716 11239 -1 1524 LSC 0.003942 16 2 18 273 no 0.714286 6 0.833333 0.003942 0.998688 42.900000 IGS_016 igs atpA|atpF atpA-atpF 11240 11305 0 66 LSC 0.000000 0 1 13 207 no 0.000000 2 0.000000 0.000000 0.984848 21.100000 atpF gene atpF atpF 11306 12611 -1 1306 LSC 0.007297 22 48 79 41 no 0.428571 5 0.600000 0.006454 0.977029 45.100000 IGS_017 igs atpF|atpH atpF-atpH 12612 13071 0 460 LSC 0.011180 12 7 148 42 no 0.714286 6 0.833333 0.011316 0.986957 48.400000 atpH gene atpH atpH 13072 13317 -1 246 LSC 0.007743 5 0 3 48 no 0.428571 4 0.750000 0.007743 1.000000 33.000000 IGS_018 igs atpH|atpI atpH-atpI 13318 13810 0 493 LSC 0.016845 23 9 146 75 no 0.714286 6 0.833333 0.016619 0.995943 57.200000 atpI gene atpI atpI 13811 14560 -1 750 LSC 0.003048 5 0 13 14 no 0.142857 3 0.333333 0.003048 1.000000 30.900000 IGS_019 igs atpI|rps2 atpI-rps2 14561 14803 0 243 LSC 0.021164 13 1 71 27 no 0.571429 5 0.800000 0.021245 0.995885 48.100000 rps2 gene rps2 rps2 14804 15514 -1 711 LSC 0.005626 11 0 22 24 no 0.428571 4 0.750000 0.005626 1.000000 39.200000 IGS_020 igs rps2|rpoC2 rps2-rpoC2 15515 15747 0 233 LSC 0.007766 5 0 239 39 no 0.571429 5 0.800000 0.007766 1.000000 38.600000 rpoC2 gene rpoC2 rpoC2 15748 19872 -1 4125 LSC 0.007678 85 7 57 39 no 0.714286 6 0.833333 0.007678 0.998303 42.600000 IGS_021 igs rpoC2|rpoC1 rpoC2-rpoC1 19873 20059 0 187 LSC 0.012628 5 6 142 174 no 0.428571 4 0.750000 0.012628 0.967914 49.200000 rpoC1 gene rpoC1 rpoC1 20060 22899 -1 2840 LSC 0.005207 40 9 56 121 no 0.714286 6 0.833333 0.005211 0.997887 44.200000 IGS_022 igs rpoC1|rpoB rpoC1-rpoB 22900 22925 0 26 LSC 0.000000 0 0 149 95 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 rpoB gene rpoB rpoB 22926 26144 -1 3219 LSC 0.003284 31 0 175 160 no 0.714286 6 0.833333 0.003284 1.000000 49.600000 IGS_023 igs rpoB|trnC rpoB-trnC 26145 27244 0 1100 LSC 0.014935 46 13 200 85 yes 1.000000 7 1.000000 0.014920 0.997273 63.400000 trnC tRNA trnC trnC 27245 27316 1 72 LSC 0.000000 0 0 2 13 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_024 igs trnC|ycf6 trnC-ycf6 27317 27961 0 645 LSC 0.012255 19 9 74 115 no 0.714286 6 0.833333 0.012294 1.000000 54.800000 ycf6 gene ycf6 ycf6 27962 28051 1 90 LSC 0.000000 0 0 119 25 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_025 igs ycf6|psbM ycf6-psbM 28052 28597 0 546 LSC 0.018115 24 21 209 0 no 0.714286 6 0.833333 0.018182 0.970696 54.500000 psbM gene psbM psbM 28598 28702 -1 105 LSC 0.004535 1 0 8 74 no 0.000000 2 0.000000 0.004535 1.000000 22.600000 IGS_026 igs psbM|trnD psbM-trnD 28703 29703 0 1001 LSC 0.014386 34 31 104 93 no 0.714286 6 0.833333 0.014133 0.992008 59.500000 trnD tRNA trnD trnD 29704 29780 -1 77 LSC 0.000000 0 0 10 16 no 0.000000 1 0.000000 0.000000 1.000000 19.500000 IGS_027 igs trnD|trnY trnD-trnY 29781 30217 0 437 LSC 0.024191 26 11 87 34 no 0.714286 6 0.833333 0.024596 0.997712 58.700000 trnY tRNA trnY trnY 30218 30303 -1 86 LSC 0.005537 1 0 0 84 no 0.000000 2 0.000000 0.005537 1.000000 22.700000 IGS_028 igs trnY|trnE trnY-trnE 30304 30360 0 57 LSC 0.000000 0 0 51 27 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 trnE tRNA trnE trnE 30361 30435 -1 75 LSC 0.006349 1 0 108 48 no 0.000000 2 0.000000 0.006349 1.000000 26.900000 IGS_029 igs trnE|trnT trnE-trnT 30436 31255 0 820 LSC 0.016596 36 17 47 78 yes 1.000000 7 1.000000 0.016681 0.986585 62.300000 IGS_030 igs trnT|psbD trnT-psbD 31330 32461 0 1132 LSC 0.016258 42 82 80 300 yes 0.714286 6 0.833333 0.015936 0.978799 61.500000 psbD gene psbD psbD 32462 33523 1 1062 LSC 0.000986 3 0 33 27 no 0.142857 3 0.333333 0.000986 1.000000 30.500000 psbC gene psbC psbC 33471 34892 1 1422 LSC 0.004554 17 0 127 23 no 1.000000 7 1.000000 0.004554 1.000000 49.000000 IGS_032 igs psbC|trnS psbC-trnS 34893 35072 0 180 LSC 0.020106 12 0 63 124 no 0.428571 5 0.600000 0.020106 1.000000 48.900000 trnS tRNA trnS trnS 35073 35164 -1 92 LSC 0.000000 0 0 12 32 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_033 igs trnS|ycf9 trnS-ycf9 35165 35510 0 346 LSC 0.014038 13 5 104 107 no 0.428571 5 0.600000 0.014155 1.000000 48.200000 ycf9 gene ycf9 ycf9 35511 35699 1 189 LSC 0.001512 1 0 50 3 no 0.142857 2 0.500000 0.001512 1.000000 23.000000 IGS_034 igs ycf9|trnG ycf9-trnG 35700 36180 0 481 LSC 0.020635 24 2 81 104 no 0.714286 6 0.833333 0.020669 0.997921 57.900000 trnG tRNA trnG trnG 36181 36252 1 72 LSC 0.000000 0 0 2 32 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_035 igs trnG|trnM trnG-trnM 36253 36394 0 142 LSC 0.010731 4 1 74 100 no 0.428571 4 0.750000 0.010798 1.000000 41.500000 trnM tRNA trnM trnM 36395 36469 -1 75 LSC 0.000000 0 0 38 25 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_036 igs trnM|rps14 trnM-rps14 36470 36628 0 159 LSC 0.004792 2 1 113 300 no 0.285714 4 0.500000 0.004798 1.000000 37.100000 rps14 gene rps14 rps14 36629 36931 -1 303 LSC 0.000000 0 0 44 75 no 0.000000 1 0.000000 0.000000 1.000000 22.100000 IGS_037 igs rps14|psaB rps14-psaB 36932 37065 0 134 LSC 0.006397 3 0 300 6 no 0.285714 3 0.666667 0.006397 1.000000 30.200000 psaB gene psaB psaB 37066 39270 -1 2205 LSC 0.002851 16 0 39 300 no 0.571429 5 0.800000 0.002851 1.000000 39.400000 IGS_038 igs psaB|psaA psaB-psaA 39271 39295 0 25 LSC 0.000000 0 0 80 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 psaA gene psaA psaA 39296 41548 -1 2253 LSC 0.002494 15 0 105 39 no 0.428571 5 0.600000 0.002494 1.000000 36.300000 IGS_039 igs psaA|ycf3 psaA-ycf3 41549 42265 0 717 LSC 0.011855 20 43 173 298 yes 1.000000 7 1.000000 0.012430 0.947001 70.100000 ycf3 gene ycf3 ycf3 42266 44274 -1 2009 LSC 0.006214 33 19 63 28 no 0.714286 6 0.833333 0.006228 0.995022 45.300000 IGS_040 igs ycf3|trnS ycf3-trnS 44275 44510 0 236 LSC 0.007295 5 1 11 105 no 0.428571 4 0.750000 0.007295 0.995763 33.900000 trnS tRNA trnS trnS 44511 44597 1 87 LSC 0.000000 0 0 16 18 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_041 igs trnS|rps4 trnS-rps4 44598 44913 0 316 LSC 0.017782 15 1 103 109 no 0.571429 5 0.800000 0.017827 0.996835 51.800000 rps4 gene rps4 rps4 44914 45519 -1 606 LSC 0.002672 5 0 19 25 no 0.428571 4 0.750000 0.002672 1.000000 36.700000 IGS_042 igs rps4|trnT rps4-trnT 45520 45905 0 386 LSC 0.011596 12 2 38 84 no 0.714286 6 0.833333 0.011641 0.997409 46.400000 IGS_043 igs trnT|trnL trnT-trnL 45981 46767 0 787 LSC 0.025908 49 27 77 109 yes 0.714286 6 0.833333 0.022303 0.993647 67.400000 trnL_part1 tRNA trnL trnL 46768 46802 1 35 LSC 0.000000 0 0 21 74 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 trnL_part2 tRNA trnL trnL 47307 47356 1 50 LSC 0.005714 1 0 172 39 no 0.142857 2 0.500000 0.005714 1.000000 29.400000 IGS_046 igs trnL|trnF trnL-trnF 47357 48189 0 833 LSC 0.095058 139 299 32 76 yes 0.714286 6 0.833333 0.082725 0.744298 72.600000 trnF tRNA trnF trnF 48190 48262 1 73 LSC 0.000000 0 0 0 3 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_047 igs trnF|ndhJ trnF-ndhJ 48263 48854 0 592 LSC 0.015548 25 84 73 141 yes 0.714286 6 0.833333 0.014995 0.981419 60.800000 ndhJ gene ndhJ ndhJ 48855 49331 -1 477 LSC 0.003794 5 0 12 16 no 0.142857 3 0.333333 0.003794 1.000000 29.000000 IGS_048 igs ndhJ|psbG ndhJ-psbG 49332 49433 0 102 LSC 0.015873 5 0 182 29 no 0.285714 4 0.500000 0.015873 1.000000 39.600000 psbG gene psbG psbG 49434 50111 -1 678 LSC 0.003652 7 0 17 24 no 0.428571 4 0.750000 0.003652 1.000000 37.200000 IGS_049 igs psbG|ndhC psbG-ndhC 50112 50178 0 67 LSC 0.028860 5 3 20 162 no 0.714286 6 0.833333 0.029431 0.970149 60.300000 ndhC gene ndhC ndhC 50179 50541 -1 363 LSC 0.004198 4 0 34 68 no 0.142857 4 0.250000 0.004198 1.000000 28.600000 IGS_050 igs ndhC|trnV ndhC-trnV 50542 51375 0 834 LSC 0.022074 47 8 75 46 no 0.428571 5 0.600000 0.021124 0.997602 54.500000 trnV_part2 tRNA trnV trnV 51376 51410 -1 35 LSC 0.000000 0 0 34 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 trnV_part1 tRNA trnV trnV 52018 52056 -1 39 LSC 0.000000 0 0 148 160 no 0.000000 1 0.000000 0.000000 1.000000 29.800000 IGS_053 igs trnV|trnM trnV-trnM 52057 52240 0 184 LSC 0.003106 2 0 187 91 no 0.285714 3 0.666667 0.003106 1.000000 33.700000 trnM tRNA trnM trnM 52241 52313 1 73 LSC 0.000000 0 0 22 18 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_054 igs trnM|atpE trnM-atpE 52314 52454 0 141 LSC 0.060447 11 60 95 6 no 0.714286 6 0.833333 0.027889 0.595745 59.800000 atpE gene atpE atpE 52455 52853 -1 399 LSC 0.010025 9 0 10 167 no 0.428571 5 0.600000 0.010025 1.000000 36.900000 atpB gene atpB atpB 52850 54346 -1 1497 LSC 0.004390 17 0 29 16 no 0.428571 5 0.600000 0.004390 1.000000 37.600000 IGS_056 igs atpB|rbcL atpB-rbcL 54347 55143 0 797 LSC 0.013726 25 13 56 300 no 0.714286 6 0.833333 0.013814 0.986198 54.200000 rbcL gene rbcL rbcL 55144 56583 1 1440 LSC 0.003770 14 0 84 65 no 0.571429 5 0.800000 0.003770 1.000000 43.500000 IGS_057 igs rbcL|accD rbcL-accD 56584 57280 0 697 LSC 0.017067 30 29 43 8 no 0.714286 6 0.833333 0.017054 0.969871 56.000000 accD gene accD accD 57281 58744 1 1464 LSC 0.010343 39 0 17 13 no 0.571429 5 0.800000 0.010343 1.000000 44.700000 IGS_058 igs accD|psaI accD-psaI 58745 59361 0 617 LSC 0.010220 17 141 6 137 no 0.714286 6 0.833333 0.009483 0.987034 50.800000 psaI gene psaI psaI 59362 59475 1 114 LSC 0.000000 0 0 67 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_059 igs psaI|ycf4 psaI-ycf4 59476 59877 0 402 LSC 0.011846 14 2 181 296 yes 1.000000 7 1.000000 0.011860 1.000000 63.500000 ycf4 gene ycf4 ycf4 59878 60432 1 555 LSC 0.002746 4 0 1 13 no 0.285714 4 0.500000 0.002746 1.000000 31.600000 IGS_060 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 60433 60862 0 430 LSC 0.021064 22 10 78 191 no 0.714286 6 0.833333 0.021146 0.988372 59.000000 ycf10/cemA gene ycf10/cemA ycf10/cemA 60863 61552 1 690 LSC 0.002899 5 0 73 12 no 0.142857 4 0.250000 0.002899 1.000000 30.800000 IGS_061 igs ycf10/cemA|petA ycf10/cemA-petA 61553 61774 0 222 LSC 0.006006 4 10 24 269 no 0.714286 6 0.833333 0.006134 1.000000 44.300000 petA gene petA petA 61775 62737 1 963 LSC 0.003956 9 0 9 24 no 0.428571 5 0.600000 0.003956 1.000000 36.700000 IGS_062 igs petA|psbJ petA-psbJ 62738 63724 0 987 LSC 0.023524 53 28 231 64 yes 0.714286 6 0.833333 0.020838 0.980750 63.400000 psbJ gene psbJ psbJ 63725 63847 -1 123 LSC 0.003871 1 0 79 3 no 0.000000 2 0.000000 0.003871 1.000000 21.700000 IGS_063 igs psbJ|psbL psbJ-psbL 63848 63990 0 143 LSC 0.003996 2 0 58 18 no 0.142857 2 0.500000 0.003996 1.000000 26.300000 psbL gene psbL psbL 63991 64107 -1 117 LSC 0.004070 1 0 7 261 no 0.000000 2 0.000000 0.004070 1.000000 22.200000 IGS_064 igs psbL|psbF psbL-psbF 64108 64128 0 21 LSC 0.000000 0 0 98 240 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 psbF gene psbF psbF 64129 64248 -1 120 LSC 0.000000 0 0 119 120 no 0.000000 1 0.000000 0.000000 1.000000 27.700000 IGS_065 igs psbF|psbE psbF-psbE 64249 64257 0 9 LSC 0.000000 0 0 239 111 no 0.000000 1 0.000000 NA 1.000000 27.100000 psbE gene psbE psbE 64258 64509 -1 252 LSC 0.003023 2 0 248 58 no 0.285714 3 0.666667 0.003023 1.000000 30.800000 IGS_066 igs psbE|ORF31 psbE-ORF31 64510 65907 0 1398 LSC 0.016382 58 454 53 47 no 0.714286 6 0.833333 0.017737 0.987124 57.500000 ORF31 gene ORF31 ORF31 65908 66003 1 96 LSC 0.002976 1 0 9 12 no 0.142857 2 0.500000 0.002976 1.000000 24.700000 IGS_067 igs ORF31|petG ORF31-petG 66004 66191 0 188 LSC 0.012223 7 11 48 50 no 0.428571 4 0.750000 0.012626 0.994681 46.100000 petG gene petG petG 66192 66305 1 114 LSC 0.002506 1 0 2 29 no 0.142857 2 0.500000 0.002506 1.000000 23.800000 IGS_068 igs petG|trnW petG-trnW 66306 66433 0 128 LSC 0.020833 6 0 63 87 no 0.142857 3 0.333333 0.020833 1.000000 41.400000 trnW tRNA trnW trnW 66434 66507 -1 74 LSC 0.000000 0 0 27 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_069 igs trnW|trnP trnW-trnP 66508 66693 0 186 LSC 0.015361 7 0 101 104 no 0.428571 5 0.600000 0.015361 1.000000 46.000000 trnP tRNA trnP trnP 66694 66768 -1 75 LSC 0.000000 0 0 71 29 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 IGS_070 igs trnP|psaJ trnP-psaJ 66769 67144 0 376 LSC 0.012322 13 10 146 119 no 0.428571 5 0.600000 0.010865 0.978723 49.700000 psaJ gene psaJ psaJ 67145 67273 1 129 LSC 0.004430 2 0 116 66 no 0.142857 2 0.500000 0.004430 1.000000 30.300000 IGS_071 igs psaJ|rpl33 psaJ-rpl33 67274 67714 0 441 LSC 0.013447 16 13 1 8 no 1.000000 7 1.000000 0.012888 0.988662 54.200000 rpl33 gene rpl33 rpl33 67715 67915 1 201 LSC 0.011846 6 0 55 33 no 0.142857 4 0.250000 0.011846 1.000000 33.000000 IGS_072 igs rpl33|rps18 rpl33-rps18 67916 68139 0 224 LSC 0.008503 5 42 9 161 no 0.571429 5 0.800000 0.009220 1.000000 41.900000 rps18 gene rps18 rps18 68140 68445 1 306 LSC 0.002490 2 0 116 15 no 0.142857 3 0.333333 0.002490 1.000000 24.600000 IGS_073 igs rps18|rpl20 rps18-rpl20 68446 68743 0 298 LSC 0.017637 12 2 39 39 no 0.428571 5 0.600000 0.017665 0.996644 43.400000 rpl20 gene rpl20 rpl20 68744 69097 -1 354 LSC 0.002959 3 0 26 38 no 0.285714 4 0.500000 0.002959 1.000000 29.600000 IGS_074 igs rpl20|rps12 rpl20-rps12 69098 69854 0 757 LSC 0.014254 28 8 197 166 yes 0.714286 6 0.833333 0.014060 1.000000 63.100000 rps12_part1 gene rps12 rps12 69855 69968 -1 114 LSC 0.000000 0 0 27 52 no 0.000000 1 0.000000 0.000000 1.000000 20.800000 IGS_075 igs rps12|clpP rps12-clpP 69969 70149 0 181 LSC 0.028414 15 0 141 231 yes 0.571429 5 0.800000 0.028414 1.000000 63.200000 clpP gene clpP clpP 70150 72202 -1 2053 LSC 0.009384 50 33 17 20 no 0.714286 6 0.833333 0.009268 0.992694 47.500000 IGS_076 igs clpP|psbB clpP-psbB 72203 72690 0 488 LSC 0.008018 8 2 95 95 no 0.428571 5 0.600000 0.008028 0.997951 43.900000 psbB gene psbB psbB 72691 74217 1 1527 LSC 0.003617 14 0 15 45 no 0.714286 6 0.833333 0.003617 1.000000 42.200000 IGS_077 igs psbB|psbT psbB-psbT 74218 74393 0 176 LSC 0.004870 3 3 116 82 no 0.428571 4 0.750000 0.004884 1.000000 39.300000 psbT gene psbT psbT 74394 74495 1 102 LSC 0.004669 1 0 66 9 no 0.000000 2 0.000000 0.004669 1.000000 22.800000 IGS_078 igs psbT|psbN psbT-psbN 74496 74560 0 65 LSC 0.017582 4 0 19 75 no 0.428571 4 0.750000 0.018598 1.000000 43.400000 psbN gene psbN psbN 74561 74692 -1 132 LSC 0.002165 1 0 2 7 no 0.142857 2 0.500000 0.002165 1.000000 23.500000 IGS_079 igs psbN|psbH psbN-psbH 74693 74796 0 104 LSC 0.002747 1 0 56 144 no 0.142857 2 0.500000 0.002747 1.000000 28.100000 psbH gene psbH psbH 74797 75018 1 222 LSC 0.001287 1 2 96 3 no 0.142857 3 0.333333 0.001291 1.000000 23.800000 IGS_080 igs psbH|petB psbH-petB 75019 75153 0 135 LSC 0.006490 2 8 77 116 no 0.142857 3 0.333333 0.005160 1.000000 37.700000 petB gene petB petB 75154 76596 1 1443 LSC 0.004161 15 8 69 76 no 0.714286 6 0.833333 0.004168 0.999307 47.400000 IGS_081 igs petB|petD petB-petD 76597 76777 0 181 LSC 0.003157 2 0 12 28 no 0.285714 3 0.666667 0.003157 1.000000 27.800000 petD gene petD petD 76778 77981 1 1204 LSC 0.007877 25 8 66 55 no 0.714286 6 0.833333 0.007906 0.997508 49.400000 IGS_082 igs petD|rpoA petD-rpoA 77982 78181 0 200 LSC 0.012381 8 1 51 45 no 1.000000 7 1.000000 0.012431 0.995000 51.900000 rpoA gene rpoA rpoA 78182 79165 -1 984 LSC 0.006485 19 0 31 55 no 0.571429 5 0.800000 0.006485 1.000000 43.400000 IGS_083 igs rpoA|rps11 rpoA-rps11 79166 79224 0 59 LSC 0.004843 1 0 38 60 no 0.142857 2 0.500000 0.004843 1.000000 28.600000 rps11 gene rps11 rps11 79225 79641 -1 417 LSC 0.006852 7 0 3 43 no 0.428571 5 0.600000 0.006852 1.000000 34.600000 IGS_084 igs rps11|rpl36 rps11-rpl36 79642 79758 0 117 LSC 0.009768 4 2 63 63 no 0.571429 5 0.800000 0.009902 0.991453 44.600000 rpl36 gene rpl36 rpl36 79759 79872 -1 114 LSC 0.002506 1 0 30 80 no 0.142857 2 0.500000 0.002506 1.000000 25.900000 IGS_085 igs rpl36|rps8 rpl36-rps8 79873 80337 0 465 LSC 0.020775 22 4 50 180 no 0.428571 5 0.600000 0.019614 0.991398 50.000000 rps8 gene rps8 rps8 80338 80742 -1 405 LSC 0.005409 7 0 35 51 no 0.428571 4 0.750000 0.005409 1.000000 36.200000 IGS_086 igs rps8|rpl14 rps8-rpl14 80743 80953 0 211 LSC 0.020763 11 0 80 9 no 1.000000 7 1.000000 0.020763 1.000000 54.000000 rpl14 gene rpl14 rpl14 80954 81322 -1 369 LSC 0.007227 7 0 22 75 no 0.428571 4 0.750000 0.007227 1.000000 35.500000 IGS_087 igs rpl14|rpl16 rpl14-rpl16 81323 81446 0 124 LSC 0.006969 2 6 56 35 no 0.428571 5 0.600000 0.007100 0.991935 39.900000 rpl16 gene rpl16 rpl16 81447 82955 -1 1509 LSC 0.014518 56 67 28 91 yes 1.000000 7 1.000000 0.013536 0.966865 61.400000 IGS_088 igs rpl16|rps3 rpl16-rps3 82956 83123 0 168 LSC 0.006803 4 0 63 51 no 0.285714 3 0.666667 0.006803 1.000000 34.000000 rps3 gene rps3 rps3 83124 83780 -1 657 LSC 0.004929 8 0 25 28 no 0.428571 5 0.600000 0.004929 1.000000 38.700000 rpl22 gene rpl22 rpl22 83765 84247 -1 483 LSC 0.008873 13 0 33 13 no 0.571429 5 0.800000 0.008873 1.000000 41.600000 IGS_090 igs rpl22|rps19 rpl22-rps19 84248 84303 0 56 LSC 0.005102 1 2 50 102 no 0.428571 4 0.750000 0.005149 1.000000 39.300000 rps19 gene rps19 rps19 84304 84582 -1 279 LSC 0.003072 3 0 42 4 no 0.428571 4 0.750000 0.003072 1.000000 29.800000 IGS_091 igs rps19|rpl2 rps19-rpl2 84583 84636 0 54 IRb 0.010582 2 0 116 300 no 0.285714 3 0.666667 0.010582 1.000000 42.200000 rpl2 gene rpl2 rpl2 84637 86143 -1 1507 IRb 0.000695 3 6 2 300 no 0.428571 4 0.750000 0.000697 1.000000 34.200000 IGS_092 igs rpl2|rpl23 rpl2-rpl23 86144 86161 0 18 IRb 0.000000 0 0 51 287 no 0.000000 1 0.000000 NA 1.000000 22.600000 rpl23 gene rpl23 rpl23 86162 86443 -1 282 IRb 0.000000 0 0 69 5 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_093 igs rpl23|trnM rpl23-trnM 86444 86610 0 167 IRb 0.006273 2 0 300 300 no 0.142857 3 0.333333 0.006273 1.000000 40.700000 trnM tRNA trnM trnM 86611 86685 -1 75 IRb 0.000000 0 0 63 300 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_094 igs trnM|ycf2 trnM-ycf2 86686 86773 0 88 IRb 0.000000 0 0 138 249 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 ycf2 gene ycf2 ycf2 86774 93649 1 6876 IRb 0.001662 27 9 226 13 no 0.714286 6 0.833333 0.001664 0.999127 34.500000 IGS_095 igs ycf2|orf77 ycf2-orf77 93650 93785 0 136 IRb 0.006303 2 0 12 11 no 0.142857 3 0.333333 0.006303 1.000000 26.900000 orf77 gene orf77 orf77 93786 94019 1 234 IRb 0.004070 2 0 24 237 no 0.000000 2 0.000000 0.004070 1.000000 23.400000 IGS_096 igs orf77|trnL orf77-trnL 94020 94565 0 546 IRb 0.000523 1 0 79 194 no 0.142857 2 0.500000 0.000523 1.000000 32.900000 IGS_097 igs trnL|ndhB trnL-ndhB 94649 95227 0 579 IRb 0.001809 3 6 300 0 no 0.428571 4 0.750000 0.001813 1.000000 35.300000 ndhB gene ndhB ndhB 95228 97451 -1 2224 IRb 0.001713 11 6 79 10 no 0.714286 6 0.833333 0.001717 0.997302 39.300000 IGS_098 igs ndhB|rps7 ndhB-rps7 97452 97764 0 313 IRb 0.006694 5 0 35 114 no 0.428571 5 0.600000 0.006694 1.000000 34.700000 rps7 gene rps7 rps7 97765 98232 -1 468 IRb 0.000611 1 0 56 300 no 0.142857 2 0.500000 0.000611 1.000000 29.700000 IGS_099 igs rps7|trnV rps7-trnV 98233 100992 0 2760 IRb 0.002019 15 17 300 300 no 0.714286 6 0.833333 0.001989 1.000000 53.100000 IGS_100 igs trnV|rrn16S trnV-rrn16S 101065 101295 0 231 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 101296 102786 1 1491 IRb 0.000192 1 0 300 291 no 0.142857 2 0.500000 0.000192 1.000000 42.800000 IGS_101 igs rrn16S|trnI rrn16S-trnI 102787 103084 0 298 IRb 0.000959 1 0 300 283 no 0.142857 2 0.500000 0.000959 1.000000 37.300000 trnI_part1 tRNA trnI trnI 103085 103116 1 32 IRb 0.000000 0 0 6 251 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 orf133 gene orf133 orf133 103466 103801 1 336 IRb 0.000850 1 0 97 300 no 0.142857 2 0.500000 0.000850 1.000000 30.200000 IGS_104 igs orf133|trnI orf133-trnI 103802 104063 0 262 IRb 0.000000 0 1 82 300 no 0.000000 2 0.000000 0.000000 1.000000 25.300000 trnI_part2 tRNA trnI trnI 104064 104103 1 40 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_105 igs trnI|trnA trnI-trnA 104104 104167 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 104168 104204 1 37 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 105008 105043 1 36 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_108 igs trnA|rrn23S trnA-rrn23S 105044 105195 0 152 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23S rRNA rrn23S rrn23S 105196 108005 1 2810 IRb 0.000102 1 0 300 115 no 0.142857 2 0.500000 0.000102 1.000000 33.700000 IGS_109 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 108006 108103 0 98 IRb 0.000000 0 0 300 17 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 rrn4.5S rRNA rrn4.5S rrn4.5S 108104 108206 1 103 IRb 0.002774 1 0 300 90 no 0.142857 2 0.500000 0.002774 1.000000 30.600000 IGS_110 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 108207 108453 0 247 IRb 0.002313 2 0 85 112 no 0.285714 3 0.666667 0.002313 1.000000 32.500000 rrn5S rRNA rrn5S rrn5S 108454 108574 1 121 IRb 0.002361 1 0 36 300 no 0.142857 2 0.500000 0.002361 1.000000 26.200000 IGS_111 igs rrn5S|trnR rrn5S-trnR 108575 108823 0 249 IRb 0.000000 0 9 8 176 no 0.000000 3 0.000000 0.000000 1.000000 23.500000 trnR tRNA trnR trnR 108824 108898 1 75 IRb 0.000000 0 0 257 101 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 IGS_112 igs trnR|trnN trnR-trnN 108899 109521 0 623 IRb 0.002752 5 10 300 214 no 0.428571 5 0.600000 0.002786 0.985554 51.800000 trnN tRNA trnN trnN 109522 109595 -1 74 IRb 0.000000 0 0 142 140 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_113 igs trnN|ycf1 trnN-ycf1 109596 109920 0 325 IRb 0.002687 2 6 216 300 no 0.142857 3 0.333333 0.002687 0.981538 40.500000 ycf1 gene ycf1 ycf1 109921 110952 1 1032 IRb 0.002510 8 0 137 36 no 0.428571 5 0.600000 0.002308 1.000000 37.800000 ndhF gene ndhF ndhF 110914 113154 -1 2241 SSC 0.008891 53 0 19 71 no 0.714286 6 0.833333 0.008799 1.000000 45.200000 IGS_115 igs ndhF|rpl32 ndhF-rpl32 113155 113989 0 835 SSC 0.026975 55 13 105 98 yes 0.714286 6 0.833333 0.026045 0.998802 67.900000 rpl32 gene rpl32 rpl32 113990 114148 1 159 SSC 0.005391 2 0 16 40 no 0.142857 3 0.333333 0.005391 1.000000 26.600000 IGS_116 igs rpl32|trnL rpl32-trnL 114149 114932 0 784 SSC 0.037625 73 19 15 50 yes 1.000000 7 1.000000 0.036131 0.994898 76.100000 IGS_117 igs trnL|ycf5 trnL-ycf5 115015 115129 0 115 SSC 0.021450 5 4 31 107 no 0.142857 4 0.250000 0.021450 0.965217 41.800000 ycf5 gene ycf5 ycf5 115130 116116 1 987 SSC 0.013316 33 0 18 5 no 0.714286 6 0.833333 0.013316 1.000000 48.900000 IGS_118 igs ycf5|ndhD ycf5-ndhD 116117 116336 0 220 SSC 0.011255 7 1 51 3 no 0.714286 6 0.833333 0.011302 0.995455 41.800000 ndhD gene ndhD ndhD 116337 117857 -1 1521 SSC 0.007076 28 0 135 29 no 1.000000 7 1.000000 0.007076 1.000000 51.400000 IGS_119 igs ndhD|psaC ndhD-psaC 117858 117993 0 136 SSC 0.008403 4 0 2 57 no 0.285714 3 0.666667 0.008403 1.000000 31.700000 psaC gene psaC psaC 117994 118239 -1 246 SSC 0.001161 1 0 22 14 no 0.142857 2 0.500000 0.001161 1.000000 23.500000 IGS_120 igs psaC|ndhE psaC-ndhE 118240 118479 0 240 SSC 0.007937 6 0 188 93 no 0.571429 5 0.800000 0.007937 1.000000 43.100000 ndhE gene ndhE ndhE 118480 118785 -1 306 SSC 0.004980 3 0 22 3 no 0.142857 3 0.333333 0.004980 1.000000 25.200000 IGS_121 igs ndhE|ndhG ndhE-ndhG 118786 119030 0 245 SSC 0.027017 17 1 173 15 no 0.714286 6 0.833333 0.027052 1.000000 54.600000 ndhG gene ndhG ndhG 119031 119561 -1 531 SSC 0.007533 11 0 8 24 no 0.714286 6 0.833333 0.007538 1.000000 43.500000 IGS_122 igs ndhG|ndhI ndhG-ndhI 119562 119875 0 314 SSC 0.017288 14 1 57 1 no 0.714286 6 0.833333 0.015507 0.996815 46.200000 ndhI gene ndhI ndhI 119876 120394 -1 519 SSC 0.007340 10 0 40 52 no 0.571429 5 0.800000 0.007340 1.000000 42.700000 IGS_123 igs ndhI|ndhA ndhI-ndhA 120395 120478 0 84 SSC 0.022676 4 0 50 3 no 0.285714 4 0.500000 0.022676 1.000000 40.500000 ndhA gene ndhA ndhA 120479 122630 -1 2152 SSC 0.010055 56 9 9 217 no 1.000000 7 1.000000 0.009814 0.996283 51.200000 IGS_124 igs ndhA|ndhH ndhA-ndhH 122631 122631 0 1 SSC 0.000000 0 0 16 216 no 0.000000 1 0.000000 NA 1.000000 20.000000 ndhH gene ndhH ndhH 122632 123813 -1 1182 SSC 0.007010 19 0 17 2 no 0.714286 6 0.833333 0.007010 1.000000 43.700000 IGS_125 igs ndhH|rps15 ndhH-rps15 123814 123915 0 102 SSC 0.021475 5 0 19 18 no 0.285714 4 0.500000 0.021475 1.000000 41.200000 rps15 gene rps15 rps15 123916 124182 -1 267 SSC 0.003924 3 0 3 27 no 0.285714 4 0.500000 0.003924 1.000000 27.500000 IGS_126 igs rps15|ycf1 rps15-ycf1 124183 124507 0 325 SSC 0.023004 18 14 19 50 no 0.714286 6 0.833333 0.023087 1.000000 56.600000 ycf1 gene ycf1 ycf1 124508 129886 -1 5379 SSC 0.014577 208 52 1 137 yes 1.000000 7 1.000000 0.014568 1.000000 50.100000 IGS_127 igs ycf1|trnN ycf1-trnN 129887 130211 0 325 IRa 0.002687 2 6 300 216 no 0.142857 3 0.333333 0.002687 0.981538 40.500000 trnN tRNA trnN trnN 130212 130285 1 74 IRa 0.000000 0 0 140 142 no 0.000000 1 0.000000 0.000000 1.000000 29.200000 IGS_128 igs trnN|trnR trnN-trnR 130286 130908 0 623 IRa 0.003210 6 10 214 300 no 0.428571 5 0.600000 0.003249 0.985554 52.200000 trnR tRNA trnR trnR 130909 130983 -1 75 IRa 0.000000 0 0 101 257 no 0.000000 1 0.000000 0.000000 1.000000 26.300000 IGS_129 igs trnR|rrn5S trnR-rrn5S 130984 131232 0 249 IRa 0.000000 0 8 176 8 no 0.000000 3 0.000000 0.000000 0.995984 23.000000 rrn5S rRNA rrn5S rrn5S 131233 131353 -1 121 IRa 0.002361 1 0 300 36 no 0.142857 2 0.500000 0.002361 1.000000 26.200000 IGS_130 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 131354 131600 0 247 IRa 0.002313 2 0 112 85 no 0.285714 3 0.666667 0.002313 1.000000 32.500000 rrn4.5S rRNA rrn4.5S rrn4.5S 131601 131703 -1 103 IRa 0.002774 1 0 90 300 no 0.142857 2 0.500000 0.002774 1.000000 30.600000 IGS_131 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 131704 131801 0 98 IRa 0.000000 0 0 17 300 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 rrn23S rRNA rrn23S rrn23S 131802 134611 -1 2810 IRa 0.000102 1 0 115 300 no 0.142857 2 0.500000 0.000102 1.000000 33.700000 IGS_132 igs rrn23S|trnA rrn23S-trnA 134612 134763 0 152 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 134764 134799 -1 36 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part1 tRNA trnA trnA 135603 135639 -1 37 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_135 igs trnA|trnI trnA-trnI 135640 135703 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI_part2 tRNA trnI trnI 135704 135743 -1 40 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 orf133 gene orf133 orf133 136006 136341 -1 336 IRa 0.000850 1 0 300 97 no 0.142857 2 0.500000 0.000850 1.000000 30.200000 IGS_138 igs orf133|trnI orf133-trnI 136342 136690 0 349 IRa 0.000819 1 0 253 300 no 0.142857 2 0.500000 0.000819 1.000000 38.200000 trnI_part1 tRNA trnI trnI 136691 136722 -1 32 IRa 0.000000 0 0 251 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_139 igs trnI|rrn16S trnI-rrn16S 136723 137020 0 298 IRa 0.000000 0 0 283 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16S rRNA rrn16S rrn16S 137021 138511 -1 1491 IRa 0.000192 1 0 300 300 no 0.142857 2 0.500000 0.000192 1.000000 42.800000 IGS_140 igs rrn16S|trnV rrn16S-trnV 138512 138742 0 231 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_141 igs trnV|rps12 trnV-rps12 138815 140726 0 1912 IRa 0.002615 14 17 300 180 no 0.714286 6 0.833333 0.002574 1.000000 54.200000 rps12_part2 gene rps12 rps12 140727 141521 1 795 IRa 0.001078 2 0 99 300 no 0.142857 3 0.333333 0.001078 1.000000 35.900000 IGS_142 igs rps12|rps7 rps12-rps7 141522 141574 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 141575 142042 1 468 IRa 0.000611 1 0 300 56 no 0.142857 2 0.500000 0.000611 1.000000 29.700000 IGS_143 igs rps7|ndhB rps7-ndhB 142043 142355 0 313 IRa 0.006694 5 0 114 35 no 0.428571 5 0.600000 0.006694 1.000000 34.700000 ndhB gene ndhB ndhB 142356 144579 1 2224 IRa 0.001713 11 6 10 79 no 0.714286 6 0.833333 0.001717 0.997302 39.300000 IGS_144 igs ndhB|trnL ndhB-trnL 144580 145158 0 579 IRa 0.001809 3 6 0 300 no 0.428571 4 0.750000 0.001813 1.000000 35.300000 IGS_145 igs trnL|orf77 trnL-orf77 145242 145787 0 546 IRa 0.000523 1 0 194 79 no 0.142857 2 0.500000 0.000523 1.000000 32.900000 orf77 gene orf77 orf77 145788 146021 -1 234 IRa 0.004070 2 0 237 24 no 0.000000 2 0.000000 0.004070 1.000000 23.400000 IGS_146 igs orf77|ycf2 orf77-ycf2 146022 146157 0 136 IRa 0.006303 2 0 11 12 no 0.142857 3 0.333333 0.006303 1.000000 26.900000 ycf2 gene ycf2 ycf2 146158 153033 -1 6876 IRa 0.001662 27 9 13 226 no 0.714286 6 0.833333 0.001664 0.999127 34.500000 IGS_147 igs ycf2|trnM ycf2-trnM 153034 153121 0 88 IRa 0.000000 0 0 249 138 no 0.000000 1 0.000000 0.000000 1.000000 29.100000 trnM tRNA trnM trnM 153122 153196 1 75 IRa 0.000000 0 0 300 63 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 IGS_148 igs trnM|rpl23 trnM-rpl23 153197 153363 0 167 IRa 0.006273 2 0 300 300 no 0.142857 3 0.333333 0.006273 1.000000 40.700000 rpl23 gene rpl23 rpl23 153364 153645 1 282 IRa 0.000000 0 0 5 69 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_149 igs rpl23|rpl2 rpl23-rpl2 153646 153663 0 18 IRa 0.000000 0 0 287 51 no 0.000000 1 0.000000 NA 1.000000 22.600000 rpl2 gene rpl2 rpl2 153664 155170 1 1507 IRa 0.000695 3 6 300 2 no 0.428571 4 0.750000 0.000697 1.000000 34.200000 IGS_150 igs rpl2|trnH rpl2-trnH 155171 2 0 169 IRa 0.008171 4 0 300 79 no 0.428571 4 0.750000 0.007641 1.000000 39.300000