Pi
0.00602
MarkerSeek score
42.80
Primer available
yes
Label
ycf1
Feature Metadata
Pi Curve
Haplotype Network
Species Separation
Primer Ranking
| Primer ID | fwd_seq | rev_seq | fwd_gc | rev_gc | fwd_tm | rev_tm | amplicon_size | cross_species_success_rate | primer_score |
|---|---|---|---|---|---|---|---|---|---|
| ycf1_p1 | ACAGATGTCGTTTCTAGTCT | GTGGCCGCGTTTCTTTTTAT | 40.0 | 45.0 | 53.5 | 57.7 | 878 bp | 1.0 | 41.9 |
| ycf1_p2 | AACAGATGTCGTTTCTAGTCT | GTGGCCGCGTTTCTTTTTAT | 38.1 | 45.0 | 54.4 | 57.7 | 879 bp | 1.0 | 41.0 |
| ycf1_p3 | ACAGATGTCGTTTCTAGTCT | TGGCCGCGTTTCTTTTTATC | 40.0 | 45.0 | 53.5 | 57.4 | 877 bp | 1.0 | 40.9 |
| ycf1_p4 | ACAGATGTCGTTTCTAGTCT | TTACGAATGGGGTTGGTGTT | 40.0 | 45.0 | 53.5 | 57.3 | 938 bp | 1.0 | 40.9 |
| ycf1_p5 | AACAGATGTCGTTTCTAGTCT | TGGCCGCGTTTCTTTTTATC | 38.1 | 45.0 | 54.4 | 57.4 | 878 bp | 1.0 | 40.9 |
| ycf1_p1 | TCTTCCTCACTTTCCACCCT | AGGGCCCTCTTATCTCTTCC | 50.0 | 55.0 | 57.9 | 57.9 | 672 bp | 1.0 | 79.5 |
| ycf1_p2 | TCTTCCTCACTTTCCACCCT | GGGCCCTCTTATCTCTTCCT | 50.0 | 55.0 | 57.9 | 57.9 | 671 bp | 1.0 | 79.5 |
| ycf1_p3 | TCTTCCTCACTTTCCACCCT | TCCGAGCTCAGGTTATGGAA | 50.0 | 50.0 | 57.9 | 58.1 | 649 bp | 1.0 | 79.3 |
| ycf1_p4 | TCTTCCTCACTTTCCACCCT | TCGTTGTGGTCGGACTCTAT | 50.0 | 50.0 | 57.9 | 58.2 | 718 bp | 1.0 | 78.9 |
| ycf1_p5 | TCTTCCTCACTTTCCACCCT | ATCAATTCGGTCGTTGTGGT | 50.0 | 45.0 | 57.9 | 57.8 | 728 bp | 1.0 | 78.8 |