feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH-GUG tRNA trnH-GUG trnH-GUG 54 127 -1 74 LSC 0.000000 0 0 1 45 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_001 igs trnH-GUG|psbA trnH-GUG-psbA 128 485 0 358 LSC 0.012492 20 44 75 162 yes 0.555556 7 0.714286 0.013283 0.997207 54.200000 psbA gene psbA psbA 486 1547 -1 1062 LSC 0.001622 7 0 46 64 no 0.111111 3 0.333333 0.001622 1.000000 32.100000 IGS_002 igs psbA|trnK-UUU psbA-trnK-UUU 1548 1794 0 247 LSC 0.003486 3 4 206 70 no 0.333333 4 0.750000 0.003505 1.000000 35.300000 trnK-UUU_part2 tRNA trnK-UUU trnK-UUU 1795 1823 -1 29 LSC 0.000000 0 0 0 41 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 matK gene matK matK 2097 3605 -1 1509 LSC 0.002319 15 0 29 21 no 0.444444 5 0.800000 0.002319 1.000000 37.200000 IGS_005 igs matK|trnK-UUU matK-trnK-UUU 3606 4336 0 731 LSC 0.002052 6 0 119 61 no 0.111111 3 0.333333 0.002052 1.000000 33.600000 trnK-UUU_part1 tRNA trnK-UUU trnK-UUU 4337 4373 -1 37 LSC 0.000000 0 0 275 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_006 igs trnK-UUU|rps16 trnK-UUU-rps16 4374 5297 0 924 LSC 0.006235 25 200 300 54 yes 0.555556 6 0.833333 0.006382 0.996753 50.400000 rps16 gene rps16 rps16 5298 6474 -1 1177 LSC 0.002360 10 8 11 22 no 0.333333 5 0.600000 0.002371 1.000000 35.000000 IGS_007 igs rps16|trnQ-UUG rps16-trnQ-UUG 6475 8732 0 2258 LSC 0.008522 74 704 132 88 yes 1.000000 9 1.000000 0.008432 0.999557 60.600000 trnQ-UUG tRNA trnQ-UUG trnQ-UUG 8733 8804 -1 72 LSC 0.000000 0 0 23 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_008 igs trnQ-UUG|psbK trnQ-UUG-psbK 8805 9152 0 348 LSC 0.002554 4 2 95 57 no 0.111111 2 0.500000 0.002569 1.000000 29.400000 psbK gene psbK psbK 9153 9338 1 186 LSC 0.005078 3 0 27 11 no 0.222222 4 0.500000 0.005078 1.000000 28.000000 IGS_009 igs psbK|trnS-GCU psbK-trnS-GCU 9339 10001 0 663 LSC 0.003687 9 13 50 32 no 0.777778 8 0.875000 0.003728 1.000000 47.700000 trnS-GCU tRNA trnS-GCU trnS-GCU 10002 10089 -1 88 LSC 0.002525 1 0 49 184 no 0.111111 2 0.500000 0.002525 1.000000 27.100000 IGS_010 igs trnS-GCU|trnR-UCU trnS-GCU-trnR-UCU 10090 12063 0 1974 LSC 0.003932 30 93 55 73 yes 1.000000 9 1.000000 0.004017 0.988855 55.900000 trnR-UCU tRNA trnR-UCU trnR-UCU 12064 12135 1 72 LSC 0.000000 0 0 49 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_011 igs trnR-UCU|atpA trnR-UCU-atpA 12136 12321 0 186 LSC 0.008363 7 2 121 131 no 0.111111 3 0.333333 0.008454 1.000000 39.600000 atpA gene atpA atpA 12322 13845 -1 1524 LSC 0.001568 10 0 28 111 no 0.222222 3 0.666667 0.001568 1.000000 32.700000 IGS_012 igs atpA|atpF atpA-atpF 13846 13913 0 68 LSC 0.000000 0 0 86 43 no 0.000000 1 0.000000 0.000000 1.000000 22.000000 atpF gene atpF atpF 13914 15209 -1 1296 LSC 0.001200 7 1 154 180 no 0.111111 3 0.333333 0.001201 1.000000 39.900000 IGS_013 igs atpF|atpI atpF-atpI 15210 16833 0 1624 LSC 0.002155 15 14 198 300 yes 0.666667 7 0.857143 0.002167 0.999384 55.200000 atpI gene atpI atpI 16834 17577 -1 744 LSC 0.001120 3 0 15 31 no 0.222222 4 0.500000 0.001120 1.000000 31.300000 IGS_014 igs atpI|rps2 atpI-rps2 17578 17791 0 214 LSC 0.003115 3 0 92 300 no 0.111111 2 0.500000 0.003115 1.000000 30.900000 rps2 gene rps2 rps2 17792 18502 -1 711 LSC 0.001250 4 0 71 39 no 0.222222 3 0.666667 0.001250 1.000000 33.400000 IGS_015 igs rps2|rpoC2 rps2-rpoC2 18503 18713 0 211 LSC 0.001053 1 2 26 101 no 0.222222 4 0.500000 0.001059 1.000000 27.000000 rpoC2 gene rpoC2 rpoC2 18714 22889 -1 4176 LSC 0.001423 26 0 171 270 no 0.555556 7 0.714286 0.001423 1.000000 44.700000 IGS_016 igs rpoC2|rpoC1 rpoC2-rpoC1 22890 23054 0 165 LSC 0.000000 0 0 300 105 no 0.000000 1 0.000000 0.000000 1.000000 26.600000 rpoC1 gene rpoC1 rpoC1 23055 25866 -1 2812 LSC 0.001284 15 1 300 300 no 0.333333 4 0.750000 0.001285 1.000000 44.800000 IGS_017 igs rpoC1|rpoB rpoC1-rpoB 25867 25897 0 31 LSC 0.000000 0 0 287 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpoB gene rpoB rpoB 25898 29110 -1 3213 LSC 0.000605 8 0 300 40 no 0.333333 4 0.750000 0.000605 1.000000 31.400000 IGS_018 igs rpoB|trnC-GCA rpoB-trnC-GCA 29111 30393 0 1283 LSC 0.002972 15 223 300 141 yes 0.666667 7 0.857143 0.002762 0.998441 55.600000 trnC-GCA tRNA trnC-GCA trnC-GCA 30394 30464 1 71 LSC 0.000000 0 0 31 70 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_019 igs trnC-GCA|petN trnC-GCA-petN 30465 31315 0 851 LSC 0.004961 19 0 102 105 no 0.333333 4 0.750000 0.004961 1.000000 43.900000 petN gene petN petN 31316 31405 1 90 LSC 0.000000 0 0 177 15 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 IGS_020 igs petN|psbM petN-psbM 31406 32640 0 1235 LSC 0.003396 18 5 267 300 no 0.333333 4 0.750000 0.003408 1.000000 50.100000 psbM gene psbM psbM 32641 32745 -1 105 LSC 0.000000 0 0 46 300 no 0.000000 1 0.000000 0.000000 1.000000 22.200000 IGS_021 igs psbM|trnD-GUC psbM-trnD-GUC 32746 33928 0 1183 LSC 0.004750 22 92 151 129 yes 0.777778 8 0.875000 0.004470 0.999155 59.400000 trnD-GUC tRNA trnD-GUC trnD-GUC 33929 34002 -1 74 LSC 0.000000 0 0 5 55 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 IGS_022 igs trnD-GUC|trnY-GUA trnD-GUC-trnY-GUA 34003 34446 0 444 LSC 0.004880 9 0 79 68 yes 0.444444 5 0.800000 0.004880 1.000000 39.900000 trnY-GUA tRNA trnY-GUA trnY-GUA 34447 34530 -1 84 LSC 0.004630 1 0 71 300 no 0.000000 2 0.000000 0.004630 1.000000 27.600000 IGS_023 igs trnY-GUA|trnE-UUC trnY-GUA-trnE-UUC 34531 34584 0 54 LSC 0.000000 0 0 15 281 no 0.000000 1 0.000000 0.000000 1.000000 19.900000 trnE-UUC tRNA trnE-UUC trnE-UUC 34585 34657 -1 73 LSC 0.000000 0 0 69 208 no 0.000000 1 0.000000 0.000000 1.000000 23.900000 IGS_024 igs trnE-UUC|psbD trnE-UUC-psbD 34658 36929 0 2272 LSC 0.003399 32 39 142 72 yes 0.555556 7 0.714286 0.003376 1.000000 44.600000 psbD gene psbD psbD 36930 37991 1 1062 LSC 0.001726 7 0 183 22 no 0.333333 4 0.750000 0.001726 1.000000 34.500000 psbC gene psbC psbC 37939 39360 1 1422 LSC 0.001485 7 18 300 31 no 0.111111 4 0.250000 0.001497 1.000000 32.200000 IGS_026 igs psbC|trnS-UGA psbC-trnS-UGA 39361 39599 0 239 LSC 0.012087 13 8 300 300 yes 0.111111 2 0.500000 0.012506 1.000000 52.100000 trnS-UGA tRNA trnS-UGA trnS-UGA 39600 39692 -1 93 LSC 0.000000 0 0 81 300 no 0.000000 1 0.000000 0.000000 1.000000 24.800000 IGS_027 igs trnS-UGA|psbZ trnS-UGA-psbZ 39693 39977 0 285 LSC 0.000000 0 3 174 131 no 0.111111 2 0.500000 0.000000 1.000000 31.900000 psbZ gene psbZ psbZ 39978 40166 1 189 LSC 0.003821 2 0 300 109 no 0.111111 3 0.333333 0.003821 1.000000 32.100000 IGS_028 igs psbZ|trnfM-CAU psbZ-trnfM-CAU 40167 41088 0 922 LSC 0.019945 66 145 39 213 yes 0.777778 8 0.875000 0.019161 0.992408 65.500000 trnfM-CAU tRNA trnfM-CAU trnfM-CAU 41089 41162 -1 74 LSC 0.000000 0 0 11 139 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_029 igs trnfM-CAU|rps14 trnfM-CAU-rps14 41163 41334 0 172 LSC 0.001292 1 0 85 73 no 0.111111 2 0.500000 0.001292 1.000000 27.600000 rps14 gene rps14 rps14 41335 41637 -1 303 LSC 0.002200 3 0 32 179 no 0.111111 2 0.500000 0.002200 1.000000 25.500000 IGS_030 igs rps14|psaB rps14-psaB 41638 41768 0 131 LSC 0.000000 0 0 29 48 no 0.000000 1 0.000000 0.000000 1.000000 20.900000 psaB gene psaB psaB 41769 43973 -1 2205 LSC 0.000831 7 0 160 300 no 0.111111 3 0.333333 0.000831 1.000000 38.400000 IGS_031 igs psaB|psaA psaB-psaA 43974 43998 0 25 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 psaA gene psaA psaA 43999 46251 -1 2253 LSC 0.000592 6 0 300 77 no 0.111111 2 0.500000 0.000592 1.000000 31.900000 IGS_032 igs psaA|ycf3 psaA-ycf3 46252 46968 0 717 LSC 0.002170 7 5 54 279 no 0.222222 3 0.666667 0.002183 1.000000 36.300000 ycf3 gene ycf3 ycf3 46969 48943 -1 1975 LSC 0.000338 3 16 97 143 no 0.111111 2 0.500000 0.000340 1.000000 34.700000 IGS_033 igs ycf3|trnS-GGA ycf3-trnS-GGA 48944 49843 0 900 LSC 0.003827 12 255 300 103 yes 0.666667 7 0.857143 0.003436 1.000000 52.200000 trnS-GGA tRNA trnS-GGA trnS-GGA 49844 49930 1 87 LSC 0.000000 0 0 197 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_034 igs trnS-GGA|rps4 trnS-GGA-rps4 49931 50205 0 275 LSC 0.002424 3 8 284 12 no 0.111111 2 0.500000 0.002497 1.000000 27.700000 rps4 gene rps4 rps4 50206 50811 -1 606 LSC 0.001100 3 0 93 34 no 0.111111 2 0.500000 0.001100 1.000000 30.700000 IGS_035 igs rps4|trnT-UGU rps4-trnT-UGU 50812 51112 0 301 LSC 0.003691 5 0 73 233 no 0.333333 4 0.750000 0.003691 1.000000 34.200000 trnT-UGU tRNA trnT-UGU trnT-UGU 51113 51185 -1 73 LSC 0.000000 0 0 32 160 no 0.000000 1 0.000000 0.000000 1.000000 21.100000 IGS_036 igs trnT-UGU|trnL-UAA trnT-UGU-trnL-UAA 51186 52203 0 1018 LSC 0.005602 22 67 105 239 yes 0.666667 7 0.857143 0.005674 1.000000 56.600000 trnL-UAA_part1 tRNA trnL-UAA trnL-UAA 52204 52240 1 37 LSC 0.000000 0 0 55 202 no 0.000000 1 0.000000 0.000000 1.000000 22.900000 trnL-UAA_part2 tRNA trnL-UAA trnL-UAA 52757 52806 1 50 LSC 0.000000 0 0 300 38 no 0.000000 1 0.000000 0.000000 1.000000 21.600000 IGS_039 igs trnL-UAA|trnF-GAA trnL-UAA-trnF-GAA 52807 53184 0 378 LSC 0.003181 5 84 300 125 no 0.555556 6 0.833333 0.003106 0.997354 47.800000 trnF-GAA tRNA trnF-GAA trnF-GAA 53185 53257 1 73 LSC 0.000000 0 0 249 52 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_040 igs trnF-GAA|ndhJ trnF-GAA-ndhJ 53258 53967 0 710 LSC 0.003443 11 11 300 199 yes 0.444444 5 0.800000 0.003481 1.000000 53.600000 ndhJ gene ndhJ ndhJ 53968 54444 -1 477 LSC 0.000466 1 0 14 76 no 0.111111 2 0.500000 0.000466 1.000000 26.000000 IGS_041 igs ndhJ|ndhK ndhJ-ndhK 54445 54538 0 94 LSC 0.002364 1 0 277 124 no 0.111111 2 0.500000 0.002364 1.000000 32.500000 ndhK gene ndhK ndhK 54539 55390 -1 852 LSC 0.000717 2 0 17 119 no 0.111111 3 0.333333 0.000717 1.000000 29.000000 ndhC gene ndhC ndhC 55270 55632 -1 363 LSC 0.001837 3 0 300 14 no 0.111111 2 0.500000 0.001837 1.000000 25.100000 IGS_043 igs ndhC|trnV-UAC ndhC-trnV-UAC 55633 56782 0 1150 LSC 0.003406 16 32 86 227 no 0.444444 6 0.666667 0.003479 0.995652 46.200000 trnV-UAC_part2 tRNA trnV-UAC trnV-UAC 56783 56819 -1 37 LSC 0.000000 0 0 57 190 no 0.000000 1 0.000000 0.000000 1.000000 23.000000 trnV-UAC_part1 tRNA trnV-UAC trnV-UAC 57394 57432 -1 39 LSC 0.000000 0 0 48 80 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_046 igs trnV-UAC|trnM-CAU trnV-UAC-trnM-CAU 57433 57605 0 173 LSC 0.002569 2 0 87 188 no 0.111111 2 0.500000 0.002569 1.000000 30.000000 trnM-CAU tRNA trnM-CAU trnM-CAU 57606 57678 1 73 LSC 0.000000 0 0 30 115 no 0.000000 1 0.000000 0.000000 1.000000 21.000000 IGS_047 igs trnM-CAU|atpE trnM-CAU-atpE 57679 57921 0 243 LSC 0.000914 1 0 103 78 no 0.111111 2 0.500000 0.000914 1.000000 27.600000 atpE gene atpE atpE 57922 58323 -1 402 LSC 0.000553 1 0 127 300 no 0.111111 2 0.500000 0.000553 1.000000 33.000000 atpB gene atpB atpB 58320 59816 -1 1497 LSC 0.000779 4 0 300 50 no 0.111111 3 0.333333 0.000779 1.000000 31.500000 IGS_049 igs atpB|rbcL atpB-rbcL 59817 60579 0 763 LSC 0.001238 3 0 70 81 no 0.111111 3 0.333333 0.001238 1.000000 33.400000 rbcL gene rbcL rbcL 60580 62007 1 1428 LSC 0.001206 7 0 264 168 no 0.222222 3 0.666667 0.001206 1.000000 42.900000 IGS_050 igs rbcL|accD rbcL-accD 62008 62602 0 595 LSC 0.001494 4 0 300 95 no 0.111111 2 0.500000 0.001494 1.000000 35.600000 accD gene accD accD 62603 64120 1 1518 LSC 0.001171 8 0 73 11 no 0.111111 2 0.500000 0.001171 1.000000 29.100000 IGS_051 igs accD|psaI accD-psaI 64121 64917 0 797 LSC 0.003904 14 56 42 114 no 0.333333 5 0.600000 0.004058 1.000000 44.300000 psaI gene psaI psaI 64918 65028 1 111 LSC 0.000000 0 0 176 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_052 igs psaI|ycf4 psaI-ycf4 65029 65447 0 419 LSC 0.002784 4 0 287 105 no 0.111111 3 0.333333 0.002784 1.000000 33.600000 ycf4 gene ycf4 ycf4 65448 66008 1 561 LSC 0.000792 2 0 258 153 no 0.111111 2 0.500000 0.000792 1.000000 38.500000 IGS_053 igs ycf4|cemA ycf4-cemA 66009 66860 0 852 LSC 0.003586 13 11 102 300 no 0.222222 4 0.500000 0.003625 1.000000 41.900000 cemA gene cemA cemA 66861 67550 1 690 LSC 0.000322 1 0 37 92 no 0.111111 2 0.500000 0.000322 1.000000 30.200000 IGS_054 igs cemA|petA cemA-petA 67551 67777 0 227 LSC 0.006853 5 0 300 92 no 0.111111 4 0.250000 0.006853 1.000000 33.600000 petA gene petA petA 67778 68740 1 963 LSC 0.001154 5 0 16 41 no 0.222222 3 0.666667 0.001154 1.000000 31.500000 IGS_055 igs petA|psbJ petA-psbJ 68741 69801 0 1061 LSC 0.001728 7 3 297 300 no 0.444444 5 0.800000 0.001730 1.000000 50.300000 psbJ gene psbJ psbJ 69802 69924 -1 123 LSC 0.000000 0 0 196 300 no 0.000000 1 0.000000 0.000000 1.000000 33.500000 IGS_056 igs psbJ|psbF psbJ-psbF 69925 70212 0 288 LSC 0.000000 0 6 300 300 no 0.111111 2 0.500000 0.000000 1.000000 38.400000 psbF gene psbF psbF 70213 70332 -1 120 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_057 igs psbF|psbE psbF-psbE 70333 70341 0 9 LSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 70342 70593 -1 252 LSC 0.000000 0 0 300 85 no 0.000000 1 0.000000 0.000000 1.000000 25.100000 IGS_058 igs psbE|petL psbE-petL 70594 71936 0 1343 LSC 0.001386 6 363 300 8 no 0.666667 7 0.857143 0.001572 0.968727 43.700000 petL gene petL petL 71937 72032 1 96 LSC 0.002315 1 0 215 20 no 0.111111 2 0.500000 0.002315 1.000000 24.700000 IGS_059 igs petL|petG petL-petG 72033 72210 0 178 LSC 0.003745 3 0 87 169 no 0.222222 3 0.666667 0.003745 1.000000 33.200000 petG gene petG petG 72211 72324 1 114 LSC 0.000000 0 0 13 55 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_060 igs petG|trnW-CCA petG-trnW-CCA 72325 72454 0 130 LSC 0.005128 3 0 127 209 no 0.111111 2 0.500000 0.005128 1.000000 35.600000 trnW-CCA tRNA trnW-CCA trnW-CCA 72455 72528 -1 74 LSC 0.000000 0 0 19 135 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_061 igs trnW-CCA|trnP-UGG trnW-CCA-trnP-UGG 72529 72699 0 171 LSC 0.003899 3 0 93 164 no 0.222222 3 0.666667 0.003899 1.000000 33.800000 trnP-UGG tRNA trnP-UGG trnP-UGG 72700 72772 -1 73 LSC 0.000000 0 0 7 91 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_062 igs trnP-UGG|psaJ trnP-UGG-psaJ 72773 73168 0 396 LSC 0.002946 4 18 80 48 no 0.333333 5 0.600000 0.002966 1.000000 38.700000 psaJ gene psaJ psaJ 73169 73300 1 132 LSC 0.001684 1 5 7 97 no 0.111111 2 0.500000 0.001750 1.000000 27.700000 IGS_063 igs psaJ|rpl33 psaJ-rpl33 73301 73739 0 439 LSC 0.007087 14 24 83 252 no 0.444444 5 0.800000 0.007276 1.000000 49.400000 rpl33 gene rpl33 rpl33 73740 73940 1 201 LSC 0.000000 0 0 80 51 no 0.000000 1 0.000000 0.000000 1.000000 22.600000 IGS_064 igs rpl33|rps18 rpl33-rps18 73941 74166 0 226 LSC 0.008112 8 30 281 300 no 0.222222 3 0.666667 0.008523 1.000000 51.800000 rps18 gene rps18 rps18 74167 74472 1 306 LSC 0.000000 0 0 103 81 no 0.000000 1 0.000000 0.000000 1.000000 24.900000 IGS_065 igs rps18|rpl20 rps18-rpl20 74473 74757 0 285 LSC 0.002339 3 0 300 46 no 0.111111 2 0.500000 0.002339 1.000000 26.700000 rpl20 gene rpl20 rpl20 74758 75111 -1 354 LSC 0.003296 4 0 75 85 no 0.333333 4 0.750000 0.003296 1.000000 34.600000 IGS_066 igs rpl20|rps12 rpl20-rps12 75112 75909 0 798 LSC 0.002228 8 1 143 300 no 0.111111 2 0.500000 0.002231 1.000000 40.200000 rps12_part1 gene rps12 rps12 75910 76023 -1 114 LSC 0.000000 0 0 75 300 no 0.000000 1 0.000000 0.000000 1.000000 24.400000 IGS_067 igs rps12|clpP rps12-clpP 76024 76166 0 143 LSC 0.000000 0 1 189 263 no 0.111111 2 0.500000 0.000000 1.000000 35.900000 clpP gene clpP clpP 76167 78224 -1 2058 LSC 0.003239 25 18 300 102 yes 0.444444 6 0.666667 0.003251 0.999028 43.800000 IGS_068 igs clpP|psbB clpP-psbB 78225 78667 0 443 LSC 0.002383 4 0 202 287 no 0.222222 4 0.500000 0.002383 1.000000 43.100000 psbB gene psbB psbB 78668 80194 1 1527 LSC 0.000582 4 0 74 68 no 0.222222 3 0.666667 0.000582 1.000000 34.800000 IGS_069 igs psbB|psbT psbB-psbT 80195 80381 0 187 LSC 0.005942 5 0 300 99 no 0.444444 5 0.800000 0.005942 1.000000 40.500000 psbT gene psbT psbT 80382 80489 1 108 LSC 0.003601 1 0 60 164 no 0.000000 2 0.000000 0.003601 1.000000 26.000000 IGS_070 igs psbT|psbN psbT-psbN 80490 80548 0 59 LSC 0.000000 0 0 8 105 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 psbN gene psbN psbN 80549 80680 -1 132 LSC 0.001684 1 0 67 179 no 0.111111 2 0.500000 0.001684 1.000000 27.600000 IGS_071 igs psbN|psbH psbN-psbH 80681 80764 0 84 LSC 0.000000 0 0 26 95 no 0.000000 1 0.000000 0.000000 1.000000 20.700000 psbH gene psbH psbH 80765 81004 1 240 LSC 0.000926 1 0 110 51 no 0.111111 2 0.500000 0.000926 1.000000 25.600000 IGS_072 igs psbH|petD psbH-petD 81005 83342 0 2338 LSC 0.001806 19 8 144 200 no 0.555556 6 0.833333 0.001810 1.000000 46.700000 petD gene petD petD 83343 83867 1 525 LSC 0.000423 1 0 183 158 no 0.111111 2 0.500000 0.000423 1.000000 37.800000 IGS_073 igs petD|rpoA petD-rpoA 83868 84074 0 207 LSC 0.003221 3 8 300 300 no 0.222222 3 0.666667 0.003278 1.000000 45.900000 rpoA gene rpoA rpoA 84075 85070 -1 996 LSC 0.001339 6 0 46 92 no 0.333333 4 0.750000 0.001339 1.000000 36.100000 IGS_074 igs rpoA|rps11 rpoA-rps11 85071 85150 0 80 LSC 0.000000 0 0 41 12 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 rps11 gene rps11 rps11 85151 85567 -1 417 LSC 0.000933 1 0 121 100 no 0.000000 2 0.000000 0.000933 1.000000 29.400000 IGS_075 igs rps11|rpl36 rps11-rpl36 85568 85681 0 114 LSC 0.001949 1 0 300 151 no 0.111111 2 0.500000 0.001949 1.000000 34.100000 rpl36 gene rpl36 rpl36 85682 85795 -1 114 LSC 0.000000 0 0 13 37 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_076 igs rpl36|infA rpl36-infA 85796 85919 0 124 LSC 0.005376 3 0 127 300 no 0.222222 3 0.666667 0.005376 1.000000 37.900000 infA gene infA infA 85920 86153 -1 234 LSC 0.000000 0 0 19 183 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_077 igs infA|rps8 infA-rps8 86154 86274 0 121 LSC 0.000000 0 0 253 62 no 0.000000 1 0.000000 0.000000 1.000000 23.400000 rps8 gene rps8 rps8 86275 86679 -1 405 LSC 0.002058 3 0 300 56 no 0.111111 3 0.333333 0.002058 1.000000 29.100000 IGS_078 igs rps8|rpl14 rps8-rpl14 86680 86847 0 168 LSC 0.001323 1 0 80 66 no 0.111111 2 0.500000 0.001323 1.000000 27.100000 rpl14 gene rpl14 rpl14 86848 87216 -1 369 LSC 0.000602 1 0 111 15 no 0.111111 2 0.500000 0.000602 1.000000 24.000000 IGS_079 igs rpl14|rpl16 rpl14-rpl16 87217 87346 0 130 LSC 0.001709 1 2 300 300 no 0.222222 4 0.500000 0.001721 0.992308 41.300000 rpl16 gene rpl16 rpl16 87347 87706 -1 360 LSC 0.000000 0 0 114 160 no 0.000000 1 0.000000 0.000000 1.000000 28.600000 IGS_080 igs rpl16|rps3 rpl16-rps3 87707 89008 0 1302 LSC 0.004529 24 25 300 6 yes 0.444444 6 0.666667 0.004482 1.000000 40.400000 rps3 gene rps3 rps3 89009 89665 -1 657 LSC 0.001353 4 0 17 3 no 0.333333 4 0.750000 0.001353 1.000000 32.800000 rpl22 gene rpl22 rpl22 89650 90204 -1 555 LSC 0.001602 4 15 160 28 no 0.444444 5 0.800000 0.001607 1.000000 39.400000 IGS_082 igs rpl22|rps19 rpl22-rps19 90205 90251 0 47 LSC 0.004728 1 0 3 105 no 0.111111 2 0.500000 0.004728 1.000000 25.800000 rps19 gene rps19 rps19 90252 90530 -1 279 LSC 0.001593 2 0 18 27 no 0.111111 2 0.500000 0.001593 1.000000 23.800000 IGS_083 igs rps19|rpl2 rps19-rpl2 90531 90602 0 72 IRb 0.005787 1 1 161 300 no 0.222222 3 0.666667 0.005831 1.000000 41.000000 rpl2 gene rpl2 rpl2 90603 92102 -1 1500 IRb 0.000148 1 11 44 300 no 0.111111 2 0.500000 0.000149 1.000000 31.400000 IGS_084 igs rpl2|rpl23 rpl2-rpl23 92103 92120 0 18 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl23 gene rpl23 rpl23 92121 92402 -1 282 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_085 igs rpl23|trnI-CAU rpl23-trnI-CAU 92403 92567 0 165 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 92568 92641 -1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_086 igs trnI-CAU|ycf2 trnI-CAU-ycf2 92642 92729 0 88 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 92730 99632 1 6903 IRb 0.000258 8 0 300 300 no 0.333333 4 0.750000 0.000258 1.000000 40.300000 IGS_087 igs ycf2|ycf15 ycf2-ycf15 99633 99773 0 141 IRb 0.000000 0 0 300 203 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf15 gene ycf15 ycf15 99774 100007 1 234 IRb 0.000950 1 0 300 300 no 0.111111 2 0.500000 0.000950 1.000000 36.800000 IGS_088 igs ycf15|trnL-CAA ycf15-trnL-CAA 100008 100639 0 632 IRb 0.000000 0 0 30 300 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 trnL-CAA tRNA trnL-CAA trnL-CAA 100640 100720 -1 81 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_089 igs trnL-CAA|ndhB trnL-CAA-ndhB 100721 101291 0 571 IRb 0.001168 3 5 300 300 no 0.111111 2 0.500000 0.001178 1.000000 43.700000 ndhB gene ndhB ndhB 101292 103503 -1 2212 IRb 0.000100 1 0 79 300 no 0.111111 2 0.500000 0.000100 1.000000 31.600000 IGS_090 igs ndhB|rps7 ndhB-rps7 103504 103823 0 320 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 rps7 gene rps7 rps7 103824 104291 -1 468 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_091 igs rps7|trnV-GAC rps7-trnV-GAC 104292 106993 0 2702 IRb 0.000164 2 162 300 300 no 0.333333 4 0.750000 0.000166 1.000000 49.900000 trnV-GAC tRNA trnV-GAC trnV-GAC 106994 107065 1 72 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_092 igs trnV-GAC|rrn16 trnV-GAC-rrn16 107066 107284 0 219 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn16 rRNA rrn16 rrn16 107285 108775 1 1491 IRb 0.000000 0 0 300 276 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_093 igs rrn16|trnI-GAU rrn16-trnI-GAU 108776 109075 0 300 IRb 0.000741 1 0 300 300 no 0.111111 2 0.500000 0.000741 1.000000 36.600000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 109076 109117 1 42 IRb 0.000000 0 0 23 300 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 110069 110103 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_096 igs trnI-GAU|trnA-UGC trnI-GAU-trnA-UGC 110104 110167 0 64 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 110168 110205 1 38 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 111009 111043 1 35 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_099 igs trnA-UGC|rrn23 trnA-UGC-rrn23 111044 111209 0 166 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 111210 114012 1 2803 IRb 0.000079 1 0 300 300 no 0.111111 2 0.500000 0.000079 1.000000 39.400000 IGS_100 igs rrn23|rrn4.5 rrn23-rrn4.5 114013 114110 0 98 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 114111 114213 1 103 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_101 igs rrn4.5|rrn5 rrn4.5-rrn5 114214 114429 0 216 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 114430 114550 1 121 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_102 igs rrn5|trnR-ACG rrn5-trnR-ACG 114551 114817 0 267 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 114818 114891 1 74 IRb 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_103 igs trnR-ACG|trnN-GUU trnR-ACG-trnN-GUU 114892 115500 0 609 IRb 0.003284 4 0 300 74 no 0.000000 2 0.000000 0.003284 1.000000 32.800000 trnN-GUU tRNA trnN-GUU trnN-GUU 115501 115572 -1 72 IRb 0.000000 0 0 19 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_104 igs trnN-GUU|ndhF trnN-GUU-ndhF 115573 117042 0 1470 IRb 0.000151 1 6 91 106 no 0.111111 2 0.500000 0.000152 1.000000 34.600000 ndhF gene ndhF ndhF 117043 119289 -1 2247 SSC 0.001978 20 1 300 122 no 0.222222 3 0.666667 0.001979 1.000000 38.800000 IGS_105 igs ndhF|rpl32 ndhF-rpl32 119290 120497 0 1208 SSC 0.004691 23 20 147 185 no 0.444444 5 0.800000 0.004704 1.000000 50.900000 rpl32 gene rpl32 rpl32 120498 120671 1 174 SSC 0.000000 0 0 80 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_106 igs rpl32|trnL-UAG rpl32-trnL-UAG 120672 121846 0 1175 SSC 0.006028 26 16 254 158 yes 0.555556 7 0.714286 0.006079 1.000000 54.400000 trnL-UAG tRNA trnL-UAG trnL-UAG 121847 121926 1 80 SSC 0.000000 0 0 53 78 no 0.000000 1 0.000000 0.000000 1.000000 22.700000 IGS_107 igs trnL-UAG|ccsA trnL-UAG-ccsA 121927 122047 0 121 SSC 0.003306 1 1 133 20 no 0.111111 3 0.333333 0.000918 1.000000 25.800000 ccsA gene ccsA ccsA 122048 123016 1 969 SSC 0.001835 8 0 42 92 no 0.333333 4 0.750000 0.001835 1.000000 36.300000 IGS_108 igs ccsA|ndhD ccsA-ndhD 123017 123282 0 266 SSC 0.010652 12 1 12 300 no 0.333333 4 0.750000 0.010663 1.000000 36.800000 ndhD gene ndhD ndhD 123283 124845 -1 1563 SSC 0.001440 7 0 30 53 no 0.333333 5 0.600000 0.001440 1.000000 34.600000 IGS_109 igs ndhD|psaC ndhD-psaC 124846 124917 0 72 SSC 0.003086 1 0 9 300 no 0.111111 2 0.500000 0.003086 1.000000 24.600000 psaC gene psaC psaC 124918 125163 -1 246 SSC 0.000000 0 0 18 131 no 0.000000 1 0.000000 0.000000 1.000000 20.100000 IGS_110 igs psaC|ndhE psaC-ndhE 125164 125409 0 246 SSC 0.002710 3 0 264 44 no 0.111111 2 0.500000 0.002710 1.000000 26.900000 ndhE gene ndhE ndhE 125410 125715 -1 306 SSC 0.000726 1 0 40 71 no 0.111111 2 0.500000 0.000726 1.000000 24.700000 IGS_111 igs ndhE|ndhG ndhE-ndhG 125716 125835 0 120 SSC 0.005556 3 0 261 197 no 0.222222 3 0.666667 0.005556 1.000000 43.300000 ndhG gene ndhG ndhG 125836 126366 -1 531 SSC 0.000418 1 0 3 60 yes 0.111111 2 0.500000 0.000418 1.000000 26.300000 IGS_112 igs ndhG|ndhI ndhG-ndhI 126367 126539 0 173 SSC 0.047367 23 15 300 0 yes 0.555556 6 0.833333 0.047656 1.000000 68.900000 ndhI gene ndhI ndhI 126540 127034 -1 495 SSC 0.003591 5 0 1 300 no 0.222222 3 0.666667 0.003591 1.000000 29.900000 IGS_113 igs ndhI|ndhA ndhI-ndhA 127035 127110 0 76 SSC 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ndhA gene ndhA ndhA 127111 129369 -1 2259 SSC 0.002361 20 36 300 241 yes 0.666667 7 0.857143 0.002395 1.000000 54.900000 IGS_114 igs ndhA|ndhH ndhA-ndhH 129370 129370 0 1 SSC 0.000000 0 0 293 240 no 0.000000 1 0.000000 NA 1.000000 33.800000 ndhH gene ndhH ndhH 129371 130552 -1 1182 SSC 0.000376 2 0 294 256 no 0.111111 2 0.500000 0.000376 1.000000 42.500000 IGS_115 igs ndhH|rps15 ndhH-rps15 130553 130655 0 103 SSC 0.000000 0 0 129 153 no 0.000000 1 0.000000 0.000000 1.000000 28.400000 rps15 gene rps15 rps15 130656 130922 -1 267 SSC 0.002705 2 0 232 84 no 0.111111 3 0.333333 0.002705 1.000000 29.300000 IGS_116 igs rps15|ycf1 rps15-ycf1 130923 131340 0 418 SSC 0.003845 5 135 23 126 no 0.777778 8 0.875000 0.002847 0.995215 44.000000 ycf1 gene ycf1 ycf1 131341 137022 -1 5682 SSC 0.002838 66 45 176 300 no 0.777778 8 0.875000 0.002818 1.000000 50.200000 IGS_117 igs ycf1|trnN-GUU ycf1-trnN-GUU 137023 137338 0 316 IRa 0.000703 1 0 300 91 no 0.111111 2 0.500000 0.000703 1.000000 28.700000 trnN-GUU tRNA trnN-GUU trnN-GUU 137339 137410 1 72 IRa 0.000000 0 0 2 19 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_118 igs trnN-GUU|trnR-ACG trnN-GUU-trnR-ACG 137411 138019 0 609 IRa 0.003284 4 0 74 300 no 0.000000 2 0.000000 0.003284 1.000000 32.800000 trnR-ACG tRNA trnR-ACG trnR-ACG 138020 138093 -1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_119 igs trnR-ACG|rrn5 trnR-ACG-rrn5 138094 138360 0 267 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn5 rRNA rrn5 rrn5 138361 138481 -1 121 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_120 igs rrn5|rrn4.5 rrn5-rrn4.5 138482 138697 0 216 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn4.5 rRNA rrn4.5 rrn4.5 138698 138800 -1 103 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_121 igs rrn4.5|rrn23 rrn4.5-rrn23 138801 138898 0 98 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rrn23 rRNA rrn23 rrn23 138899 141701 -1 2803 IRa 0.000079 1 0 300 300 no 0.111111 2 0.500000 0.000079 1.000000 39.400000 IGS_122 igs rrn23|trnA-UGC rrn23-trnA-UGC 141702 141867 0 166 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part2 tRNA trnA-UGC trnA-UGC 141868 141902 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA-UGC_part1 tRNA trnA-UGC trnA-UGC 142706 142743 -1 38 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_125 igs trnA-UGC|trnI-GAU trnA-UGC-trnI-GAU 142744 142807 0 64 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part2 tRNA trnI-GAU trnI-GAU 142808 142842 -1 35 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-GAU_part1 tRNA trnI-GAU trnI-GAU 143794 143835 -1 42 IRa 0.000000 0 0 300 23 no 0.000000 1 0.000000 0.000000 1.000000 20.500000 IGS_128 igs trnI-GAU|rrn16 trnI-GAU-rrn16 143836 144135 0 300 IRa 0.000741 1 0 300 300 no 0.111111 2 0.500000 0.000741 1.000000 36.600000 rrn16 rRNA rrn16 rrn16 144136 145626 -1 1491 IRa 0.000000 0 0 276 300 no 0.000000 1 0.000000 0.000000 1.000000 40.000000 IGS_129 igs rrn16|trnV-GAC rrn16-trnV-GAC 145627 145845 0 219 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnV-GAC tRNA trnV-GAC trnV-GAC 145846 145917 -1 72 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_130 igs trnV-GAC|rps12 trnV-GAC-rps12 145918 147772 0 1855 IRa 0.000240 2 160 300 300 no 0.333333 4 0.750000 0.000244 1.000000 51.600000 rps12_part2 gene rps12 rps12 147773 148566 1 794 IRa 0.000000 0 0 126 300 no 0.000000 1 0.000000 0.000000 1.000000 34.500000 IGS_131 igs rps12|rps7 rps12-rps7 148567 148619 0 53 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rps7 gene rps7 rps7 148620 149087 1 468 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 37.300000 IGS_132 igs rps7|ndhB rps7-ndhB 149088 149407 0 320 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 34.200000 ndhB gene ndhB ndhB 149408 151619 1 2212 IRa 0.000100 1 0 300 79 no 0.111111 2 0.500000 0.000100 1.000000 31.600000 IGS_133 igs ndhB|trnL-CAA ndhB-trnL-CAA 151620 152190 0 571 IRa 0.001168 3 5 300 300 no 0.111111 2 0.500000 0.001178 1.000000 43.700000 trnL-CAA tRNA trnL-CAA trnL-CAA 152191 152271 1 81 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_134 igs trnL-CAA|ycf15 trnL-CAA-ycf15 152272 152903 0 632 IRa 0.000000 0 0 300 30 no 0.000000 1 0.000000 0.000000 1.000000 27.200000 ycf15 gene ycf15 ycf15 152904 153137 -1 234 IRa 0.000950 1 0 300 300 no 0.111111 2 0.500000 0.000950 1.000000 36.800000 IGS_135 igs ycf15|ycf2 ycf15-ycf2 153138 153278 0 141 IRa 0.000000 0 0 203 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 ycf2 gene ycf2 ycf2 153279 160181 -1 6903 IRa 0.000290 9 0 300 300 no 0.444444 5 0.800000 0.000290 1.000000 42.400000 IGS_136 igs ycf2|trnI-CAU ycf2-trnI-CAU 160182 160269 0 88 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnI-CAU tRNA trnI-CAU trnI-CAU 160270 160343 1 74 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_137 igs trnI-CAU|rpl23 trnI-CAU-rpl23 160344 160508 0 165 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 rpl23 gene rpl23 rpl23 160509 160790 1 282 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_138 igs rpl23|rpl2 rpl23-rpl2 160791 160808 0 18 IRa 0.000000 0 0 300 300 no 0.000000 1 0.000000 NA 1.000000 33.800000 rpl2 gene rpl2 rpl2 160809 162308 1 1500 IRa 0.000148 1 11 300 44 no 0.111111 2 0.500000 0.000149 1.000000 31.400000 IGS_139 igs rpl2|trnH-GUG rpl2-trnH-GUG 162309 53 0 220 IRa 0.021952 16 98 300 119 no 0.444444 5 0.800000 0.019093 1.000000 56.700000