Hotspot

cemA

LSC · 64658-65347 · 690 bp

Back to Alseodaphne

Pi 0.00193

MarkerSeek score 60.00

Primer available yes

Label cemA

Feature Metadata

label_name: cemA
feature_type: gene
region: LSC
length_bp: 690
variable_sites: 2
pi: 0.00193
unique_haplotype_count: 3
primer_available: yes
alignment_reliability: 1.00
markerseek_score: 60.00

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
cemA_p1	ATAGAGTCGGCGAATGAAGC	CCTGGGCGGGTAGAAGTATA	50.0	55.0	57.9	58.0	842 bp	1.0	79.0
cemA_p2	GGATCAGATAGAGTCGGCGA	CCTGGGCGGGTAGAAGTATA	55.0	55.0	58.5	58.0	849 bp	1.0	76.3
cemA_p3	TCGGATCAGATAGAGTCGGC	CCTGGGCGGGTAGAAGTATA	55.0	55.0	58.5	58.0	851 bp	1.0	76.3
cemA_p4	CAGATAGAGTCGGCGAATGA	CCTGGGCGGGTAGAAGTATA	50.0	55.0	56.9	58.0	845 bp	1.0	71.6
cemA_p5	TCAGATAGAGTCGGCGAATG	CCTGGGCGGGTAGAAGTATA	50.0	55.0	56.9	58.0	846 bp	1.0	71.6