Hotspot

rpl22-rps19

IRb · 79604-79687 · 84 bp

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Pi 0.00397

MarkerSeek score 44.50

Primer available yes

Label rpl22-rps19

Feature Metadata

label_name: rpl22-rps19
feature_type: igs
region: IRb
length_bp: 84
variable_sites: 1
pi: 0.00397
unique_haplotype_count: 3
primer_available: yes
alignment_reliability: 0.95
markerseek_score: 44.50

Pi Curve

Haplotype Network

Species Separation

Primer Ranking

Primer ID	fwd_seq	rev_seq	fwd_gc	rev_gc	fwd_tm	rev_tm	amplicon_size	cross_species_success_rate	primer_score
rpl22-rps19_p1	TCCTTGCGAGTTTCCTTAGC	CAAATTGGGGGAATTCGTGC	50.0	50.0	57.9	58.0	235-239 bp	1.0	80.9
rpl22-rps19_p2	TCCTTGCGAGTTTCCTTAGC	GCAAATTGGGGGAATTCGTG	50.0	50.0	57.9	58.0	236-240 bp	1.0	80.9
rpl22-rps19_p3	TCCTTGCGAGTTTCCTTAGC	ATGGTAGGTCGCAAATTGGG	50.0	50.0	57.9	58.2	246-250 bp	1.0	79.0
rpl22-rps19_p4	TCCTTGCGAGTTTCCTTAGC	GTCGCAAATTGGGGGAATTC	50.0	50.0	57.9	57.7	239-243 bp	1.0	78.6
rpl22-rps19_p5	CGAGTTTCCTTAGCCCACTT	CAAATTGGGGGAATTCGTGC	50.0	50.0	57.5	58.0	229-233 bp	1.0	77.9