feature_id feature_type parent_gene label_name start end strand length_bp region pi variable_sites indel_sites conserved_left_bp conserved_right_bp primer_available species_resolution unique_haplotype_count species_specific_haplotype_ratio interspecific_divergence alignment_reliability markerseek_score trnH tRNA trnH trnH 9 82 -1 74 LSC 0.006757 1 0 1 15 no 0.250000 2 0.500000 0.006757 1.000000 28.200000 IGS_001 igs trnH|psbA trnH-psbA 83 346 0 264 LSC 0.072090 28 63 18 21 yes 1.000000 4 1.000000 0.067631 0.772727 73.300000 psbA gene psbA psbA 347 1408 -1 1062 LSC 0.007690 15 0 14 61 no 1.000000 4 1.000000 0.007690 1.000000 50.000000 IGS_002 igs psbA|trnK psbA-trnK 1409 1671 0 263 LSC 0.029151 15 0 155 45 no 1.000000 4 1.000000 0.029151 1.000000 61.100000 trnK_part2 tRNA trnK trnK 1672 1706 -1 35 LSC 0.000000 0 0 0 10 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 matK gene matK matK 2016 3527 -1 1512 LSC 0.024691 71 0 3 22 no 1.000000 4 1.000000 0.024691 1.000000 60.900000 IGS_005 igs matK|trnK matK-trnK 3528 4270 0 743 LSC 0.017615 25 7 36 39 no 1.000000 4 1.000000 0.017648 0.993271 59.500000 trnK_part1 tRNA trnK trnK 4271 4307 -1 37 LSC 0.000000 0 0 32 2 no 0.000000 1 0.000000 0.000000 1.000000 18.900000 IGS_006 igs trnK|trnQ trnK-trnQ 4308 6419 0 2112 LSC 0.032609 127 79 69 73 yes 1.000000 4 1.000000 0.032569 0.979640 73.700000 trnQ tRNA trnQ trnQ 6420 6491 -1 72 LSC 0.000000 0 0 19 1 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_007 igs trnQ|psbK trnQ-psbK 6492 6834 0 343 LSC 0.021930 14 7 91 25 no 1.000000 4 1.000000 0.022217 0.997085 57.600000 psbK gene psbK psbK 6835 7020 1 186 LSC 0.016129 6 0 31 36 no 0.500000 3 0.666667 0.016129 1.000000 41.700000 IGS_008 igs psbK|psbI psbK-psbI 7021 7441 0 421 LSC 0.041568 33 5 50 38 yes 1.000000 4 1.000000 0.039929 0.997625 72.700000 psbI gene psbI psbI 7442 7552 1 111 LSC 0.009009 2 0 31 4 no 0.250000 2 0.500000 0.009009 1.000000 30.000000 IGS_009 igs psbI|trnS psbI-trnS 7553 7645 0 93 LSC 0.056159 10 1 65 67 yes 0.500000 3 0.666667 0.056159 0.989247 69.000000 trnS tRNA trnS trnS 7646 7733 1 88 LSC 0.005682 1 0 28 0 no 0.250000 2 0.500000 0.005682 1.000000 27.400000 IGS_010 igs trnS|trnG trnS-trnG 7734 8269 0 536 LSC 0.027052 28 11 20 44 no 1.000000 4 1.000000 0.027489 1.000000 65.000000 trnG_part1 tRNA trnG trnG 8270 8292 1 23 LSC 0.000000 0 0 6 21 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 trnG_part2 tRNA trnG trnG 9015 9063 1 49 LSC 0.000000 0 0 12 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_013 igs trnG|trnR trnG-trnR 9064 9262 0 199 LSC 0.047120 16 51 61 57 yes 1.000000 4 1.000000 0.048252 0.884422 74.600000 trnR tRNA trnR trnR 9263 9334 1 72 LSC 0.006944 1 0 11 11 no 0.250000 2 0.500000 0.006944 1.000000 29.100000 IGS_014 igs trnR|atpA trnR-atpA 9335 9631 0 297 LSC 0.034231 20 3 14 30 no 1.000000 4 1.000000 0.034500 1.000000 63.600000 atpA gene atpA atpA 9632 11155 -1 1524 LSC 0.008858 26 0 16 86 no 1.000000 4 1.000000 0.008858 1.000000 51.000000 IGS_015 igs atpA|atpF atpA-atpF 11156 11220 0 65 LSC 0.000000 0 0 170 21 no 0.000000 1 0.000000 0.000000 1.000000 20.300000 atpF gene atpF atpF 11221 12510 -1 1290 LSC 0.010506 25 5 235 48 no 1.000000 4 1.000000 0.010506 0.996124 54.800000 IGS_016 igs atpF|atpH atpF-atpH 12511 12979 0 469 LSC 0.024784 21 6 172 42 no 1.000000 4 1.000000 0.024103 0.989339 62.100000 atpH gene atpH atpH 12980 13225 -1 246 LSC 0.008130 4 0 1 45 no 0.500000 3 0.666667 0.008130 1.000000 33.900000 IGS_017 igs atpH|atpI atpH-atpI 13226 13721 0 496 LSC 0.020109 19 10 12 201 no 1.000000 4 1.000000 0.020183 0.981855 58.200000 atpI gene atpI atpI 13722 14471 -1 750 LSC 0.007556 11 0 56 21 no 1.000000 4 1.000000 0.007559 1.000000 50.500000 IGS_018 igs atpI|rps2 atpI-rps2 14472 14712 0 241 LSC 0.019364 9 0 51 75 no 0.500000 3 0.666667 0.019364 1.000000 45.300000 rps2 gene rps2 rps2 14713 15423 -1 711 LSC 0.008204 11 0 62 24 no 0.500000 3 0.666667 0.008204 1.000000 41.800000 IGS_019 igs rps2|rpoC2 rps2-rpoC2 15424 15628 0 205 LSC 0.020325 8 3 13 3 no 0.500000 3 0.666667 0.020579 1.000000 44.100000 rpoC2 gene rpoC2 rpoC2 15629 19780 -1 4152 LSC 0.010316 84 0 48 126 no 1.000000 4 1.000000 0.010316 1.000000 49.600000 IGS_020 igs rpoC2|rpoC1 rpoC2-rpoC1 19781 19942 0 162 LSC 0.006173 2 0 4 15 no 0.500000 3 0.666667 0.006173 1.000000 32.700000 rpoC1 gene rpoC1 rpoC1 19943 22743 -1 2801 LSC 0.009044 49 2 21 10 no 1.000000 4 1.000000 0.008930 1.000000 48.100000 IGS_021 igs rpoC1|rpoB rpoC1-rpoB 22744 22769 0 26 LSC 0.019231 1 0 140 114 no 0.250000 2 0.500000 0.019231 1.000000 45.400000 rpoB gene rpoB rpoB 22770 25991 -1 3222 LSC 0.008328 50 0 15 0 no 1.000000 4 1.000000 0.008328 1.000000 46.000000 IGS_022 igs rpoB|trnC rpoB-trnC 25992 27097 0 1106 LSC 0.018586 38 42 29 82 no 1.000000 4 1.000000 0.018303 0.966546 62.300000 trnC tRNA trnC trnC 27098 27168 1 71 LSC 0.000000 0 0 15 11 no 0.000000 1 0.000000 0.000000 1.000000 19.600000 IGS_023 igs trnC|ycf6 trnC-ycf6 27169 27818 0 650 LSC 0.027865 34 19 86 28 no 0.500000 3 0.666667 0.028180 0.984615 58.500000 ycf6 gene ycf6 ycf6 27819 27908 1 90 LSC 0.005556 1 0 4 31 no 0.250000 2 0.500000 0.005556 1.000000 27.600000 IGS_024 igs ycf6|psbM ycf6-psbM 27909 28438 0 530 LSC 0.025223 25 27 61 18 no 0.500000 3 0.666667 0.025272 0.984906 56.900000 psbM gene psbM psbM 28439 28543 -1 105 LSC 0.009524 2 0 3 62 no 0.250000 2 0.500000 0.009524 1.000000 30.300000 IGS_025 igs psbM|trnD psbM-trnD 28544 29501 0 958 LSC 0.030097 56 24 8 82 yes 1.000000 4 1.000000 0.030715 0.998956 68.100000 trnD tRNA trnD trnD 29502 29575 -1 74 LSC 0.000000 0 0 27 8 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_026 igs trnD|trnY trnD-trnY 29576 30028 0 453 LSC 0.019868 17 8 101 33 no 1.000000 4 1.000000 0.020092 1.000000 58.900000 trnY tRNA trnY trnY 30029 30112 -1 84 LSC 0.005952 1 0 0 49 no 0.250000 2 0.500000 0.005952 1.000000 27.600000 IGS_027 igs trnY|trnE trnY-trnE 30113 30171 0 59 LSC 0.008475 1 0 50 96 no 0.250000 2 0.500000 0.008475 1.000000 33.100000 trnE tRNA trnE trnE 30172 30244 -1 73 LSC 0.000000 0 0 9 23 no 0.000000 1 0.000000 0.000000 1.000000 19.400000 IGS_028 igs trnE|trnT trnE-trnT 30245 31052 0 808 LSC 0.033003 50 34 82 98 yes 1.000000 4 1.000000 0.032806 0.998762 77.400000 trnT tRNA trnT trnT 31053 31124 1 72 LSC 0.000000 0 0 1 26 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_029 igs trnT|psbD trnT-psbD 31125 32260 0 1136 LSC 0.017049 35 192 73 22 no 1.000000 4 1.000000 0.016786 0.998239 61.800000 psbD gene psbD psbD 32261 33322 1 1062 LSC 0.002982 6 0 90 150 no 0.500000 3 0.666667 0.002982 1.000000 43.200000 psbC gene psbC psbC 33270 34691 1 1422 LSC 0.006446 17 0 300 16 no 0.500000 3 0.666667 0.006446 1.000000 40.000000 IGS_031 igs psbC|trnS psbC-trnS 34692 34869 0 178 LSC 0.023408 8 1 51 33 no 0.500000 3 0.666667 0.023530 1.000000 47.400000 trnS tRNA trnS trnS 34870 34962 1 93 LSC 0.005376 1 0 29 12 no 0.250000 2 0.500000 0.005376 1.000000 28.100000 IGS_032 igs trnS|ycf9 trnS-ycf9 34963 35304 0 342 LSC 0.015107 10 0 59 182 no 0.500000 3 0.666667 0.015107 1.000000 43.900000 ycf9 gene ycf9 ycf9 35305 35493 1 189 LSC 0.002646 1 0 60 53 no 0.250000 2 0.500000 0.002646 1.000000 29.300000 IGS_033 igs ycf9|trnG ycf9-trnG 35494 35995 0 502 LSC 0.014276 14 13 6 29 no 1.000000 4 1.000000 0.014571 1.000000 55.100000 IGS_034 igs trnG|trnfM trnG-trnfM 36067 36209 0 143 LSC 0.012911 3 2 41 82 no 0.500000 3 0.666667 0.012969 0.993007 41.100000 trnfM tRNA trnfM trnfM 36210 36283 -1 74 LSC 0.000000 0 0 1 8 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 IGS_035 igs trnfM|rps14 trnfM-rps14 36284 36451 0 168 LSC 0.012897 4 1 75 6 no 0.500000 3 0.666667 0.012956 0.994048 37.900000 rps14 gene rps14 rps14 36452 36754 -1 303 LSC 0.008251 5 0 25 7 no 0.500000 3 0.666667 0.008251 1.000000 34.500000 IGS_036 igs rps14|psaB rps14-psaB 36755 36886 0 132 LSC 0.005051 1 0 96 12 no 0.000000 2 0.000000 0.005051 1.000000 22.900000 psaB gene psaB psaB 36887 39091 -1 2205 LSC 0.004535 19 0 124 142 no 1.000000 4 1.000000 0.004535 1.000000 54.700000 IGS_037 igs psaB|psaA psaB-psaA 39092 39116 0 25 LSC 0.000000 0 0 146 117 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 psaA gene psaA psaA 39117 41369 -1 2253 LSC 0.003181 14 0 171 19 no 0.500000 3 0.666667 0.003181 1.000000 36.400000 IGS_038 igs psaA|ycf3 psaA-ycf3 41370 41903 0 534 LSC 0.009694 10 2 188 18 no 1.000000 4 1.000000 0.009700 0.998127 50.800000 ycf3 gene ycf3 ycf3 41904 43087 -1 1184 LSC 0.008682 20 36 3 59 no 1.000000 4 1.000000 0.008799 0.988176 53.200000 IGS_039 igs ycf3|trnS ycf3-trnS 43088 44175 0 1088 LSC 0.012726 26 12 90 31 no 1.000000 4 1.000000 0.012831 0.999081 56.100000 trnS tRNA trnS trnS 44176 44262 1 87 LSC 0.005747 1 0 5 51 no 0.250000 2 0.500000 0.005747 1.000000 27.800000 IGS_040 igs trnS|rps4 trnS-rps4 44263 44577 0 315 LSC 0.019577 12 1 55 81 no 0.500000 3 0.666667 0.019619 1.000000 46.500000 rps4 gene rps4 rps4 44578 45183 -1 606 LSC 0.005776 7 0 43 27 no 0.500000 3 0.666667 0.005776 1.000000 40.400000 IGS_041 igs rps4|trnT rps4-trnT 45184 45583 0 400 LSC 0.023451 16 8 62 88 no 1.000000 4 1.000000 0.023739 0.980000 61.700000 trnT tRNA trnT trnT 45584 45656 -1 73 LSC 0.000000 0 0 13 15 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_042 igs trnT|trnL trnT-trnL 45657 46462 0 806 LSC 0.026055 41 3 86 166 yes 1.000000 4 1.000000 0.026124 0.998759 68.700000 trnL_part1 tRNA trnL trnL 46463 46497 1 35 LSC 0.000000 0 0 1 131 no 0.000000 1 0.000000 0.000000 1.000000 18.800000 trnL_part2 tRNA trnL trnL 47009 47058 1 50 LSC 0.010000 1 0 45 1 no 0.250000 2 0.500000 0.010000 1.000000 30.500000 IGS_045 igs trnL|trnF trnL-trnF 47059 47269 0 211 LSC 0.037915 14 33 32 56 no 0.500000 3 0.666667 0.033530 0.843602 57.700000 trnF tRNA trnF trnF 47270 47342 1 73 LSC 0.006849 1 0 0 17 no 0.250000 2 0.500000 0.006849 1.000000 28.200000 IGS_046 igs trnF|ndhJ trnF-ndhJ 47343 47847 0 505 LSC 0.017492 17 0 16 53 no 1.000000 4 1.000000 0.017492 1.000000 55.100000 ndhJ gene ndhJ ndhJ 47848 48324 -1 477 LSC 0.005590 5 0 1 8 no 0.500000 3 0.666667 0.005590 1.000000 35.700000 IGS_047 igs ndhJ|psbG ndhJ-psbG 48325 48414 0 90 LSC 0.035185 6 0 182 5 no 0.500000 3 0.666667 0.035185 1.000000 52.700000 psbG gene psbG psbG 48415 49104 -1 690 LSC 0.007488 10 0 4 26 no 0.500000 3 0.666667 0.007488 1.000000 39.900000 IGS_048 igs psbG|ndhC psbG-ndhC 49105 49170 0 66 LSC 0.064516 6 8 14 26 no 0.500000 3 0.666667 0.068224 0.878788 65.400000 ndhC gene ndhC ndhC 49171 49533 -1 363 LSC 0.013315 9 0 27 68 no 1.000000 4 1.000000 0.013315 1.000000 49.900000 IGS_049 igs ndhC|trnV ndhC-trnV 49534 50392 0 859 LSC 0.025146 41 8 23 105 no 0.500000 3 0.666667 0.025244 0.995343 54.300000 trnV_part2 tRNA trnV trnV 50393 50427 -1 35 LSC 0.000000 0 0 5 70 no 0.000000 1 0.000000 0.000000 1.000000 19.100000 trnV_part1 tRNA trnV trnV 51035 51073 -1 39 LSC 0.000000 0 0 100 58 no 0.000000 1 0.000000 0.000000 1.000000 23.100000 IGS_052 igs trnV|trnM trnV-trnM 51074 51248 0 175 LSC 0.014286 5 0 139 93 no 0.500000 3 0.666667 0.014286 1.000000 45.100000 trnM tRNA trnM trnM 51249 51321 1 73 LSC 0.000000 0 0 31 20 no 0.000000 1 0.000000 0.000000 1.000000 20.200000 IGS_053 igs trnM|atpE trnM-atpE 51322 51467 0 146 LSC 0.014840 4 0 104 12 no 0.500000 3 0.666667 0.014840 1.000000 39.100000 atpE gene atpE atpE 51468 51866 -1 399 LSC 0.005430 4 0 4 218 no 0.500000 3 0.666667 0.005430 1.000000 34.200000 IGS_054 igs atpE|atpB atpE-atpB 51867 51886 0 20 LSC 0.000000 0 0 117 198 no 0.000000 1 0.000000 0.000000 1.000000 27.500000 atpB gene atpB atpB 51887 53359 -1 1473 LSC 0.004639 13 0 137 67 no 0.500000 3 0.666667 0.004639 1.000000 42.600000 IGS_055 igs atpB|rbcL atpB-rbcL 53360 54113 0 754 LSC 0.024222 23 122 23 137 no 0.500000 3 0.666667 0.010691 0.838196 52.500000 rbcL gene rbcL rbcL 54114 55565 1 1452 LSC 0.004936 14 0 90 11 no 1.000000 4 1.000000 0.004936 1.000000 48.000000 IGS_056 igs rbcL|accD rbcL-accD 55566 56233 0 668 LSC 0.024950 31 2 12 102 no 0.500000 3 0.666667 0.025007 1.000000 52.700000 accD gene accD accD 56234 57691 1 1458 LSC 0.008459 24 0 35 14 no 0.500000 3 0.666667 0.008459 1.000000 41.300000 IGS_057 igs accD|psaI accD-psaI 57692 58348 0 657 LSC 0.016055 20 14 35 27 no 0.500000 3 0.666667 0.016259 0.993912 49.800000 psaI gene psaI psaI 58349 58462 1 114 LSC 0.004386 1 0 47 34 no 0.250000 2 0.500000 0.004386 1.000000 29.100000 IGS_058 igs psaI|ycf4 psaI-ycf4 58463 58886 0 424 LSC 0.023810 19 9 86 35 no 1.000000 4 1.000000 0.024010 0.990566 61.200000 ycf4 gene ycf4 ycf4 58887 59441 1 555 LSC 0.005706 6 0 44 23 no 0.500000 3 0.666667 0.005706 1.000000 39.100000 IGS_059 igs ycf4|ycf10/cemA ycf4-ycf10/cemA 59442 59974 0 533 LSC 0.020638 21 5 194 20 no 1.000000 4 1.000000 0.020780 1.000000 59.200000 ycf10/cemA gene ycf10/cemA ycf10/cemA 59975 60664 1 690 LSC 0.006522 8 0 3 5 no 0.500000 3 0.666667 0.006522 1.000000 39.000000 IGS_060 igs ycf10/cemA|petA ycf10/cemA-petA 60665 60891 0 227 LSC 0.008811 4 2 125 161 no 0.250000 2 0.500000 0.008889 1.000000 40.000000 petA gene petA petA 60892 61860 1 969 LSC 0.003784 7 0 98 2 no 0.500000 3 0.666667 0.003784 1.000000 37.100000 IGS_061 igs petA|psbJ petA-psbJ 61861 62820 0 960 LSC 0.027662 49 40 90 57 yes 1.000000 4 1.000000 0.027054 0.993750 71.600000 psbJ gene psbJ psbJ 62821 62943 -1 123 LSC 0.012195 3 0 14 2 no 0.250000 2 0.500000 0.012195 1.000000 32.100000 IGS_062 igs psbJ|psbL psbJ-psbL 62944 63085 0 142 LSC 0.015258 4 0 46 300 no 0.500000 3 0.666667 0.015258 1.000000 42.000000 psbL gene psbL psbL 63086 63202 -1 117 LSC 0.000000 0 0 7 300 no 0.000000 1 0.000000 0.000000 1.000000 19.300000 IGS_063 igs psbL|psbF psbL-psbF 63203 63223 0 21 LSC 0.000000 0 0 124 300 no 0.000000 1 0.000000 0.000000 1.000000 28.000000 psbF gene psbF psbF 63224 63343 -1 120 LSC 0.000000 0 0 145 224 no 0.000000 1 0.000000 0.000000 1.000000 29.600000 IGS_064 igs psbF|psbE psbF-psbE 63344 63352 0 9 LSC 0.000000 0 0 265 215 no 0.000000 1 0.000000 NA 1.000000 33.800000 psbE gene psbE psbE 63353 63604 -1 252 LSC 0.001984 1 0 274 17 no 0.250000 2 0.500000 0.001984 1.000000 26.100000 IGS_065 igs psbE|ORF31 psbE-ORF31 63605 64942 0 1338 LSC 0.022172 55 169 36 4 no 0.500000 3 0.666667 0.023802 1.000000 55.100000 ORF31 gene ORF31 ORF31 64943 65038 1 96 LSC 0.010417 2 0 29 3 no 0.500000 3 0.666667 0.010417 1.000000 35.600000 IGS_066 igs ORF31|petG ORF31-petG 65039 65243 0 205 LSC 0.024390 10 9 47 29 no 1.000000 4 1.000000 0.025225 1.000000 61.900000 petG gene petG petG 65244 65357 1 114 LSC 0.014620 3 0 1 57 no 0.500000 3 0.666667 0.014620 1.000000 38.100000 IGS_067 igs petG|trnW petG-trnW 65358 65486 0 129 LSC 0.020672 5 0 57 73 no 1.000000 4 1.000000 0.020672 1.000000 55.900000 trnW tRNA trnW trnW 65487 65560 -1 74 LSC 0.006757 1 0 42 14 no 0.250000 2 0.500000 0.006757 1.000000 29.200000 IGS_068 igs trnW|trnP trnW-trnP 65561 65749 0 189 LSC 0.031746 12 0 0 171 no 0.500000 3 0.666667 0.031746 1.000000 50.300000 trnP tRNA trnP trnP 65750 65823 -1 74 LSC 0.000000 0 0 13 97 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_069 igs trnP|psaJ trnP-psaJ 65824 66200 0 377 LSC 0.019504 14 14 87 148 no 1.000000 4 1.000000 0.020073 0.984085 63.100000 psaJ gene psaJ psaJ 66201 66332 1 132 LSC 0.000000 0 0 40 16 no 0.000000 1 0.000000 0.000000 1.000000 20.000000 IGS_070 igs psaJ|rpl33 psaJ-rpl33 66333 66735 0 403 LSC 0.023451 18 9 172 5 no 1.000000 4 1.000000 0.023629 0.985112 58.400000 rpl33 gene rpl33 rpl33 66736 66936 1 201 LSC 0.019900 8 0 18 14 no 0.500000 3 0.666667 0.019900 1.000000 43.100000 IGS_071 igs rpl33|rps18 rpl33-rps18 66937 67164 0 228 LSC 0.022624 10 7 66 161 no 1.000000 4 1.000000 0.022624 0.969298 60.800000 rps18 gene rps18 rps18 67165 67470 1 306 LSC 0.003268 2 0 20 8 no 0.250000 2 0.500000 0.003268 1.000000 26.500000 IGS_072 igs rps18|rpl20 rps18-rpl20 67471 67765 0 295 LSC 0.022184 13 3 115 18 no 0.500000 3 0.666667 0.022249 0.993220 46.000000 rpl20 gene rpl20 rpl20 67766 68119 -1 354 LSC 0.007533 5 0 11 51 no 0.500000 3 0.666667 0.007533 1.000000 35.200000 IGS_073 igs rpl20|rps12 rpl20-rps12 68120 68858 0 739 LSC 0.012179 17 1 237 117 no 1.000000 4 1.000000 0.012193 0.998647 61.000000 rps12_part1 gene rps12 rps12 68859 68972 -1 114 LSC 0.000000 0 0 47 3 no 0.000000 1 0.000000 0.000000 1.000000 19.000000 IGS_074 igs rps12|clpP rps12-clpP 68973 69154 0 182 LSC 0.027473 10 0 161 102 no 0.500000 3 0.666667 0.027473 1.000000 55.000000 clpP gene clpP clpP 69155 71208 -1 2054 LSC 0.011220 44 26 27 0 no 1.000000 4 1.000000 0.011249 0.990263 51.500000 IGS_075 igs clpP|psbB clpP-psbB 71209 71695 0 487 LSC 0.014716 14 0 23 143 no 0.500000 3 0.666667 0.014716 1.000000 44.000000 psbB gene psbB psbB 71696 73222 1 1527 LSC 0.005676 17 0 96 1 no 0.500000 3 0.666667 0.005676 1.000000 38.300000 IGS_076 igs psbB|psbT psbB-psbT 73223 73367 0 145 LSC 0.030093 8 5 4 35 no 0.500000 3 0.666667 0.030754 0.965517 52.100000 psbT gene psbT psbT 73368 73469 1 102 LSC 0.009804 2 0 62 5 no 0.500000 3 0.666667 0.009804 1.000000 35.400000 IGS_077 igs psbT|psbN psbT-psbN 73470 73534 0 65 LSC 0.023077 3 0 54 39 no 0.500000 3 0.666667 0.023077 1.000000 47.200000 psbN gene psbN psbN 73535 73666 -1 132 LSC 0.005051 1 0 48 13 no 0.000000 2 0.000000 0.005051 1.000000 22.900000 IGS_078 igs psbN|psbH psbN-psbH 73667 73770 0 104 LSC 0.014423 3 0 92 176 no 0.250000 2 0.500000 0.014423 1.000000 40.400000 psbH gene psbH psbH 73771 73992 1 222 LSC 0.002252 1 0 17 15 no 0.250000 2 0.500000 0.002252 1.000000 26.100000 IGS_079 igs psbH|petB psbH-petB 73993 74130 0 138 LSC 0.018116 5 0 45 19 no 0.500000 3 0.666667 0.018116 1.000000 42.200000 petB gene petB petB 74131 75566 1 1436 LSC 0.011142 30 5 26 15 no 0.500000 3 0.666667 0.011171 0.996518 43.500000 IGS_080 igs petB|petD petB-petD 75567 75762 0 196 LSC 0.028061 10 0 72 28 no 1.000000 4 1.000000 0.028061 1.000000 58.600000 petD gene petD petD 75763 76970 1 1208 LSC 0.012033 27 6 30 103 no 1.000000 4 1.000000 0.012048 0.997517 54.700000 IGS_081 igs petD|rpoA petD-rpoA 76971 77125 0 155 LSC 0.016129 5 5 60 36 no 0.500000 3 0.666667 0.016523 1.000000 45.900000 rpoA gene rpoA rpoA 77126 78127 -1 1002 LSC 0.010978 22 0 1 22 no 0.500000 3 0.666667 0.010978 1.000000 42.100000 IGS_082 igs rpoA|rps11 rpoA-rps11 78128 78196 0 69 LSC 0.021739 3 0 17 6 no 0.500000 3 0.666667 0.021739 1.000000 43.800000 rps11 gene rps11 rps11 78197 78613 -1 417 LSC 0.012390 10 1 5 75 no 1.000000 4 1.000000 0.012404 1.000000 49.200000 IGS_083 igs rps11|rpl36 rps11-rpl36 78614 78730 0 117 LSC 0.017094 4 1 18 11 no 0.500000 3 0.666667 0.017192 0.991453 41.700000 rpl36 gene rpl36 rpl36 78731 78844 -1 114 LSC 0.008772 2 0 2 4 no 0.250000 2 0.500000 0.008772 1.000000 29.700000 IGS_084 igs rpl36|rps8 rpl36-rps8 78845 79334 0 490 LSC 0.029932 27 9 83 93 yes 1.000000 4 1.000000 0.030367 0.995918 70.100000 rps8 gene rps8 rps8 79335 79739 -1 405 LSC 0.008230 6 0 25 7 no 0.500000 3 0.666667 0.008230 1.000000 36.400000 IGS_085 igs rps8|rpl14 rps8-rpl14 79740 79960 0 221 LSC 0.024887 10 2 163 81 no 0.500000 3 0.666667 0.025045 1.000000 52.100000 rpl14 gene rpl14 rpl14 79961 80329 -1 369 LSC 0.004065 3 0 39 29 no 0.250000 2 0.500000 0.004065 1.000000 29.900000 IGS_086 igs rpl14|rpl16 rpl14-rpl16 80330 80452 0 123 LSC 0.021680 5 0 89 162 no 0.500000 3 0.666667 0.021680 1.000000 49.600000 rpl16 gene rpl16 rpl16 80453 81926 -1 1474 LSC 0.019035 54 22 22 42 no 1.000000 4 1.000000 0.018994 0.994573 60.200000 IGS_087 igs rpl16|rps3 rpl16-rps3 81927 82067 0 141 LSC 0.021277 6 0 46 51 no 0.500000 3 0.666667 0.021277 1.000000 46.500000 rps3 gene rps3 rps3 82068 82724 -1 657 LSC 0.007864 10 0 5 0 no 0.500000 3 0.666667 0.007864 1.000000 39.800000 rpl22 gene rpl22 rpl22 82709 83191 -1 483 LSC 0.013803 12 0 76 25 no 0.500000 3 0.666667 0.013803 1.000000 43.100000 IGS_089 igs rpl22|rps19 rpl22-rps19 83192 83243 0 52 LSC 0.070513 6 0 35 33 no 0.500000 3 0.666667 0.070513 1.000000 65.600000 rps19 gene rps19 rps19 83244 83522 -1 279 LSC 0.007766 4 0 20 50 no 0.500000 3 0.666667 0.007766 1.000000 34.900000 IGS_090 igs rps19|rpl2 rps19-rpl2 83523 83577 0 55 IRb 0.009091 1 1 177 204 no 0.500000 3 0.666667 0.009203 0.981818 49.500000 rpl2 gene rpl2 rpl2 83578 85084 -1 1507 IRb 0.000995 3 0 4 275 no 0.250000 2 0.500000 0.000995 1.000000 30.700000 IGS_091 igs rpl2|rpl23 rpl2-rpl23 85085 85102 0 18 IRb 0.000000 0 0 149 257 no 0.000000 1 0.000000 NA 1.000000 29.900000 rpl23 gene rpl23 rpl23 85103 85384 -1 282 IRb 0.001773 1 0 167 300 no 0.250000 2 0.500000 0.001773 1.000000 37.200000 IGS_092 igs rpl23|trnI rpl23-trnI 85385 85552 0 168 IRb 0.000000 0 0 24 300 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 IGS_093 igs trnI|ycf2 trnI-ycf2 85627 85714 0 88 IRb 0.000000 0 0 266 172 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 ycf2 gene ycf2 ycf2 85715 92566 1 6852 IRb 0.001727 23 6 300 132 no 0.500000 3 0.666667 0.001728 1.000000 39.300000 IGS_094 igs ycf2|trnL ycf2-trnL 92567 93478 0 912 IRb 0.001827 3 1 189 111 no 0.500000 3 0.666667 0.001829 1.000000 44.100000 IGS_095 igs trnL|ndhB trnL-ndhB 93560 94141 0 582 IRb 0.001718 2 0 183 39 no 0.500000 3 0.666667 0.001718 1.000000 38.100000 ndhB gene ndhB ndhB 94142 95996 -1 1855 IRb 0.002156 8 0 122 300 no 0.500000 3 0.666667 0.002156 1.000000 44.300000 IGS_096 igs ndhB|rps7 ndhB-rps7 95997 96705 0 709 IRb 0.002937 4 28 20 300 no 0.500000 3 0.666667 0.002937 0.960508 41.400000 rps7 gene rps7 rps7 96706 97173 -1 468 IRb 0.001068 1 0 76 300 no 0.250000 2 0.500000 0.001068 1.000000 33.400000 IGS_097 igs rps7|trnV rps7-trnV 97174 99938 0 2765 IRb 0.003556 19 0 110 300 no 0.500000 3 0.666667 0.003556 1.000000 42.400000 IGS_098 igs trnV|rrn16S trnV-rrn16S 100011 100242 0 232 IRb 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 1.000000 38.900000 rrn16S rRNA rrn16S rrn16S 100243 101733 1 1491 IRb 0.000000 0 0 300 14 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 IGS_099 igs rrn16S|trnI rrn16S-trnI 101734 102041 0 308 IRb 0.007035 4 0 300 185 no 1.000000 4 1.000000 0.007035 1.000000 56.300000 trnI_part1 tRNA trnI trnI 102042 102078 1 37 IRb 0.000000 0 0 6 148 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 trnI_part2 tRNA trnI trnI 103089 103123 1 35 IRb 0.000000 0 0 152 300 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 IGS_102 igs trnI|trnA trnI-trnA 103124 103187 0 64 IRb 0.000000 0 0 187 300 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 trnA_part1 tRNA trnA trnA 103188 103225 1 38 IRb 0.000000 0 0 251 300 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 trnA_part2 tRNA trnA trnA 104026 104060 1 35 IRb 0.000000 0 0 300 40 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 IGS_105 igs trnA|rrn23S trnA-rrn23S 104061 104212 0 152 IRb 0.003289 1 0 300 131 no 0.250000 2 0.500000 0.003289 1.000000 35.600000 rrn23S rRNA rrn23S rrn23S 104213 107022 1 2810 IRb 0.001068 6 1 111 161 no 0.500000 3 0.666667 0.001068 1.000000 40.800000 IGS_106 igs rrn23S|rrn4.5S rrn23S-rrn4.5S 107023 107120 0 98 IRb 0.000000 0 0 300 63 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 rrn4.5S rRNA rrn4.5S rrn4.5S 107121 107223 1 103 IRb 0.004854 1 0 300 116 no 0.250000 2 0.500000 0.004854 1.000000 35.500000 IGS_107 igs rrn4.5S|rrn5S rrn4.5S-rrn5S 107224 107471 0 248 IRb 0.004032 2 1 39 300 no 0.250000 2 0.500000 0.004049 1.000000 29.700000 rrn5S rRNA rrn5S rrn5S 107472 107592 1 121 IRb 0.000000 0 0 95 300 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_108 igs rrn5S|trnR rrn5S-trnR 107593 107840 0 248 IRb 0.000000 0 0 216 122 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 trnR tRNA trnR trnR 107841 107914 1 74 IRb 0.000000 0 0 300 48 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_109 igs trnR|trnN trnR-trnN 107915 108537 0 623 IRb 0.005636 7 2 300 85 no 0.500000 3 0.666667 0.005636 0.996790 45.000000 trnN tRNA trnN trnN 108538 108609 -1 72 IRb 0.000000 0 0 158 13 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_110 igs trnN|ycf1 trnN-ycf1 108610 108929 0 320 IRb 0.005208 3 0 230 281 no 0.500000 3 0.666667 0.005208 1.000000 47.100000 ycf1 gene ycf1 ycf1 108930 110024 1 1095 IRb 0.006393 14 0 160 5 no 0.500000 3 0.666667 0.006393 1.000000 39.200000 ndhF gene ndhF ndhF 109927 112149 -1 2223 SSC 0.015819 68 0 21 14 no 1.000000 4 1.000000 0.015819 1.000000 54.200000 IGS_112 igs ndhF|rpl32 ndhF-rpl32 112150 113011 0 862 SSC 0.034337 54 34 57 51 yes 1.000000 4 1.000000 0.034401 0.961717 74.400000 rpl32 gene rpl32 rpl32 113012 113170 1 159 SSC 0.006289 2 0 6 0 no 0.250000 2 0.500000 0.006289 1.000000 27.800000 IGS_113 igs rpl32|trnL rpl32-trnL 113171 113694 0 524 SSC 0.047758 43 22 79 121 yes 1.000000 4 1.000000 0.048463 0.971374 84.000000 IGS_114 igs trnL|ycf5 trnL-ycf5 113775 113882 0 108 SSC 0.018519 4 1 87 17 no 0.500000 3 0.666667 0.018663 1.000000 43.400000 ycf5 gene ycf5 ycf5 113883 114869 1 987 SSC 0.019926 38 0 21 0 no 1.000000 4 1.000000 0.019926 1.000000 57.500000 IGS_115 igs ycf5|ndhD ycf5-ndhD 114870 115085 0 216 SSC 0.060185 25 3 18 3 no 0.500000 3 0.666667 0.060881 1.000000 65.000000 ndhD gene ndhD ndhD 115086 116606 -1 1521 SSC 0.014574 42 0 22 130 no 1.000000 4 1.000000 0.014574 1.000000 55.400000 IGS_116 igs ndhD|psaC ndhD-psaC 116607 116741 0 135 SSC 0.003704 1 0 110 147 no 0.250000 2 0.500000 0.003704 1.000000 34.300000 psaC gene psaC psaC 116742 116987 -1 246 SSC 0.006775 3 0 4 48 no 0.500000 3 0.666667 0.006775 1.000000 33.000000 IGS_117 igs psaC|ndhE psaC-ndhE 116988 117232 0 245 SSC 0.022449 11 5 20 18 no 0.500000 3 0.666667 0.022817 0.995918 47.500000 ndhE gene ndhE ndhE 117233 117538 -1 306 SSC 0.003268 2 0 18 31 no 0.500000 3 0.666667 0.003268 1.000000 31.900000 IGS_118 igs ndhE|ndhG ndhE-ndhG 117539 117834 0 296 SSC 0.038851 22 12 224 57 yes 1.000000 4 1.000000 0.040112 1.000000 73.300000 ndhG gene ndhG ndhG 117835 118365 -1 531 SSC 0.012241 12 0 9 9 no 1.000000 4 1.000000 0.012241 1.000000 51.300000 IGS_119 igs ndhG|ndhI ndhG-ndhI 118366 118722 0 357 SSC 0.038308 25 22 50 6 yes 1.000000 4 1.000000 0.038308 0.938375 69.200000 ndhI gene ndhI ndhI 118723 119226 -1 504 SSC 0.014220 14 0 13 70 no 0.500000 3 0.666667 0.014220 1.000000 43.200000 IGS_120 igs ndhI|ndhA ndhI-ndhA 119227 119310 0 84 SSC 0.005952 1 0 53 12 no 0.250000 2 0.500000 0.005952 1.000000 28.500000 ndhA gene ndhA ndhA 119311 121475 -1 2165 SSC 0.022171 89 8 13 40 no 1.000000 4 1.000000 0.022070 1.000000 58.900000 IGS_121 igs ndhA|ndhH ndhA-ndhH 121476 121476 0 1 SSC 0.000000 0 0 4 39 no 0.000000 1 0.000000 NA 1.000000 19.100000 ndhH gene ndhH ndhH 121477 122670 -1 1194 SSC 0.010469 25 0 5 45 no 1.000000 4 1.000000 0.010469 1.000000 51.500000 IGS_122 igs ndhH|rps15 ndhH-rps15 122671 122768 0 98 SSC 0.032646 6 1 4 17 no 1.000000 4 1.000000 0.032646 0.989796 61.100000 rps15 gene rps15 rps15 122769 123035 -1 267 SSC 0.013733 7 0 3 8 no 0.500000 3 0.666667 0.013733 1.000000 37.800000 IGS_123 igs rps15|ycf1 rps15-ycf1 123036 123448 0 413 SSC 0.041667 30 86 12 9 yes 1.000000 4 1.000000 0.043212 0.992736 72.800000 ycf1 gene ycf1 ycf1 123449 128707 -1 5259 SSC 0.032230 321 6 4 160 yes 1.000000 4 1.000000 0.032258 1.000000 60.100000 IGS_124 igs ycf1|trnN ycf1-trnN 128708 129027 0 320 IRa 0.005208 3 0 281 230 no 0.500000 3 0.666667 0.005208 1.000000 47.100000 trnN tRNA trnN trnN 129028 129099 1 72 IRa 0.000000 0 0 13 158 no 0.000000 1 0.000000 0.000000 1.000000 19.700000 IGS_125 igs trnN|trnR trnN-trnR 129100 129722 0 623 IRa 0.005636 7 2 85 300 no 0.500000 3 0.666667 0.005636 0.996790 45.000000 trnR tRNA trnR trnR 129723 129796 -1 74 IRa 0.000000 0 0 48 300 no 0.000000 1 0.000000 0.000000 1.000000 22.400000 IGS_126 igs trnR|rrn5S trnR-rrn5S 129797 130044 0 248 IRa 0.000000 0 0 122 216 no 0.000000 1 0.000000 0.000000 1.000000 27.900000 rrn5S rRNA rrn5S rrn5S 130045 130165 -1 121 IRa 0.000000 0 0 300 95 no 0.000000 1 0.000000 0.000000 1.000000 25.900000 IGS_127 igs rrn5S|rrn4.5S rrn5S-rrn4.5S 130166 130413 0 248 IRa 0.004032 2 1 300 39 no 0.250000 2 0.500000 0.004049 1.000000 29.700000 rrn4.5S rRNA rrn4.5S rrn4.5S 130414 130516 -1 103 IRa 0.004854 1 0 114 300 no 0.250000 2 0.500000 0.004854 1.000000 35.400000 IGS_128 igs rrn4.5S|rrn23S rrn4.5S-rrn23S 130517 130614 0 98 IRa 0.000000 0 0 63 300 no 0.000000 1 0.000000 0.000000 1.000000 23.500000 rrn23S rRNA rrn23S rrn23S 130615 133424 -1 2810 IRa 0.001068 6 1 161 111 no 0.500000 3 0.666667 0.001068 1.000000 40.800000 IGS_129 igs rrn23S|trnA rrn23S-trnA 133425 133576 0 152 IRa 0.003289 1 0 131 300 no 0.250000 2 0.500000 0.003289 1.000000 35.600000 trnA_part2 tRNA trnA trnA 133577 133611 -1 35 IRa 0.000000 0 0 40 300 no 0.000000 1 0.000000 0.000000 1.000000 21.800000 trnA_part1 tRNA trnA trnA 134412 134449 -1 38 IRa 0.000000 0 0 300 251 no 0.000000 1 0.000000 0.000000 1.000000 33.800000 IGS_132 igs trnA|trnI trnA-trnI 134450 134513 0 64 IRa 0.000000 0 0 300 187 no 0.000000 1 0.000000 0.000000 1.000000 32.800000 trnI_part2 tRNA trnI trnI 134514 134548 -1 35 IRa 0.000000 0 0 300 152 no 0.000000 1 0.000000 0.000000 1.000000 30.100000 trnI_part1 tRNA trnI trnI 135559 135595 -1 37 IRa 0.000000 0 0 148 6 no 0.000000 1 0.000000 0.000000 1.000000 19.200000 IGS_135 igs trnI|rrn16S trnI-rrn16S 135596 135903 0 308 IRa 0.007035 4 0 185 300 no 1.000000 4 1.000000 0.007035 1.000000 56.300000 rrn16S rRNA rrn16S rrn16S 135904 137394 -1 1491 IRa 0.000000 0 0 14 300 no 0.000000 1 0.000000 0.000000 1.000000 26.100000 IGS_136 igs rrn16S|trnV rrn16S-trnV 137395 137626 0 232 IRa 0.000000 0 1 300 300 no 0.250000 2 0.500000 0.000000 1.000000 38.900000 IGS_137 igs trnV|rps12 trnV-rps12 137699 139614 0 1916 IRa 0.004871 18 0 300 287 no 0.500000 3 0.666667 0.004871 1.000000 51.900000 rps12_part2 gene rps12 rps12 139615 140410 1 796 IRa 0.000628 1 0 10 163 no 0.250000 2 0.500000 0.000628 1.000000 30.900000 IGS_138 igs rps12|rps7 rps12-rps7 140411 140463 0 53 IRa 0.000000 0 0 300 110 no 0.000000 1 0.000000 0.000000 1.000000 27.000000 rps7 gene rps7 rps7 140464 140931 1 468 IRa 0.001068 1 0 300 76 no 0.250000 2 0.500000 0.001068 1.000000 33.400000 IGS_139 igs rps7|ndhB rps7-ndhB 140932 141640 0 709 IRa 0.002937 4 28 300 20 no 0.500000 3 0.666667 0.002937 0.960508 41.400000 ndhB gene ndhB ndhB 141641 143495 1 1855 IRa 0.002156 8 0 300 122 no 0.500000 3 0.666667 0.002156 1.000000 44.300000 IGS_140 igs ndhB|trnL ndhB-trnL 143496 144077 0 582 IRa 0.001718 2 0 39 183 no 0.500000 3 0.666667 0.001718 1.000000 38.100000 IGS_141 igs trnL|ycf2 trnL-ycf2 144159 145070 0 912 IRa 0.001827 3 1 111 189 no 0.500000 3 0.666667 0.001829 1.000000 44.100000 ycf2 gene ycf2 ycf2 145071 151922 -1 6852 IRa 0.001727 23 6 132 300 no 0.500000 3 0.666667 0.001728 1.000000 39.300000 IGS_142 igs ycf2|trnI ycf2-trnI 151923 152010 0 88 IRa 0.000000 0 0 172 266 no 0.000000 1 0.000000 0.000000 1.000000 31.600000 IGS_143 igs trnI|rpl23 trnI-rpl23 152085 152252 0 168 IRa 0.000000 0 0 300 24 no 0.000000 1 0.000000 0.000000 1.000000 20.600000 rpl23 gene rpl23 rpl23 152253 152534 1 282 IRa 0.001773 1 0 300 167 no 0.250000 2 0.500000 0.001773 1.000000 37.200000 IGS_144 igs rpl23|rpl2 rpl23-rpl2 152535 152552 0 18 IRa 0.000000 0 0 257 149 no 0.000000 1 0.000000 NA 1.000000 29.900000 rpl2 gene rpl2 rpl2 152553 154059 1 1507 IRa 0.000995 3 0 275 4 no 0.250000 2 0.500000 0.000995 1.000000 30.700000 IGS_145 igs rpl2|trnH rpl2-trnH 154060 8 0 183 IRa 0.008197 3 15 204 55 no 1.000000 4 1.000000 0.008911 0.918033 51.300000